>RPA4_YEAST (P46669) DNA-dependent RNA polymerase 36 kDa polypeptide (EC|
           2.7.7.6) (A43)
          Length = 326

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
 Frame = +3

Query: 21  NLFPMYLHNNSQSFISKHSRLDLPAYNKKDYTTILSQESLKI------SPEESTRKL 173
           +L PMYL N  Q  + +H    +  YN K    +L  E LKI      S E+++ KL
Sbjct: 48  SLAPMYLENPLQGVMKQHLNPLVMKYNNKVGGVVLGYEGLKILDADPLSKEDTSEKL 104

>YNG5_YEAST (P53943) Hypothetical 65.3 kDa protein in SUN4-MAS5 intergenic|
           region
          Length = 586

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +1

Query: 19  ITSFRCTYIITARVSSQSTQGLISLHTTKKTTLQSC 126
           ITSF C+Y   + +S+ ST  L+ L+ TK +T  SC
Sbjct: 465 ITSFVCSYCAMSTLST-STTLLVDLYPTKSSTASSC 499

>HCN3_RAT (Q9JKA8) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 3
          Length = 780

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = -3

Query: 405 PKGARISGSQPA--DRAHGRALDN---SGAKQLPVRGVTSGPPTLVKLRRS 268
           P+G  +S SQP+   RA G        SG+++LP  G+ + PP  V+  RS
Sbjct: 713 PRGRPLSASQPSLPQRATGDGSPRRKGSGSERLPPSGLLAKPPGTVQPSRS 763

>HCN3_MOUSE (O88705) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 3 (Hyperpolarization-activated
           cation channel 3) (HAC-3)
          Length = 779

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = -3

Query: 405 PKGARISGSQPA--DRAHGRALDN---SGAKQLPVRGVTSGPPTLVKLRRS 268
           P+G  +S SQP+   RA G        SG+++LP  G+ + PP  V+  RS
Sbjct: 712 PRGRPLSASQPSLPQRATGDGSPRRKGSGSERLPPSGLLAKPPGTVQPPRS 762

>SPTN4_HUMAN (Q9H254) Spectrin beta chain, brain 3 (Spectrin, non-erythroid beta|
            chain 3) (Beta-IV spectrin)
          Length = 2564

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
 Frame = -2

Query: 355  EGSG*LRSKAAPSQGGHLRAP-----YTCQAQA*LPHR*RSAARKKMADPRAMAGNDQQV 191
            EG G  RS++AP+QGG   AP     +T Q +  L        RK+  D    + N   V
Sbjct: 2391 EGGGSRRSRSAPAQGGSAPAPPPPPTHTVQHEGFL-------LRKRELDANRKSSNRSWV 2443

Query: 190  ILVFVQS-----FRVDSSG 149
             L  V S     F  DS G
Sbjct: 2444 SLYCVLSKGELGFYKDSKG 2462

>VPS_BPPRD (P27392) Protein S (GpS)|
          Length = 117

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 339 SGAKQLPVRGVTSGPPTLVKLRRSC 265
           +G+  LPV G TS  PTL    RSC
Sbjct: 48  AGSVTLPVAGYTSPSPTLPNRNRSC 72

>ZN335_HUMAN (Q9H4Z2) Zinc finger protein 335|
          Length = 1342

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 345 DNSGAKQLPVRGVTSGPPTLV 283
           D+S     PV GVT GPP LV
Sbjct: 87  DSSSVSHGPVAGVTGGPPALV 107

>RUSC2_HUMAN (Q8N2Y8) RUN and SH3 domain-containing protein 2|
          Length = 1516

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 262 EAATPELDKCRGPGG 306
           EA T ELD+C GPGG
Sbjct: 196 EAETMELDECGGPGG 210

>CT128_HUMAN (Q9BQN1) Protein C20orf128|
          Length = 733

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 200 STSYISFCSEFPGRFLGRYLERFLRQDCSVV 108
           ST   ++CS+   RF G+ LE+F+  DC  V
Sbjct: 219 STCGDTYCSKAGRRFTGQALEKFVLIDCEQV 249


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,384,409
Number of Sequences: 219361
Number of extensions: 996009
Number of successful extensions: 2433
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2427
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)