ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476420.1| Oryza sativa (japonica cultivar-group), mRNA 66 1e-07
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
3dbj|AK070421.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
4dbj|AP004262.2| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
5gb|BT016414.1| Zea mays clone Contig247 mRNA sequence 50 0.006
6gb|AC129189.3| Mus musculus BAC clone RP24-67O22 from chromosome... 44 0.35
7emb|BX664703.21| Zebrafish DNA sequence from clone DKEYP-74A8 in... 44 0.35
8emb|AL662982.3|OSJN00184 Oryza sativa genomic DNA, chromosome 4,... 44 0.35
9gb|AC101771.11| Mus musculus chromosome 15, clone RP24-104H19, c... 44 0.35
10dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.35
11gb|AC161235.6| Mus musculus chromosome 3, clone RP24-86C19, comp... 42 1.4
12gb|AC104908.10| Mus musculus chromosome 3, clone RP23-325M18, co... 42 1.4
13gb|L40609.1|PFAVAR23A Plasmodium falciparum (strain FCR3) varian... 42 1.4
14gb|AC154098.6| Mus musculus chromosome 3, clone RP23-196L9, comp... 42 1.4
15gb|AC153386.3| Mus musculus 6 BAC RP23-198D7 (Roswell Park Cance... 40 5.4
16gb|AY749413.2| Culex pipiens pallens deltamethrin resistance-ass... 40 5.4
17ref|XM_753565.1| Ustilago maydis 521 hypothetical protein (UM025... 40 5.4
18gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 40 5.4
19emb|BX324159.6| Zebrafish DNA sequence from clone CH211-10O1 in ... 40 5.4
20emb|BX682544.5| Zebrafish DNA sequence from clone CH211-189G6 in... 40 5.4
21gb|AC099713.5| Mus musculus chromosome 15, clone RP23-447B6, com... 40 5.4 
>ref|XM_476420.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1473

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                     
Query: 199  gatcatttccagccatagccctcggatctgccatcttcttcctcgccgctgaccgtc 255
            ||||||||||||||||||| ||| || |||||||| || ||||||| ||||||||||
Sbjct: 1183 gatcatttccagccatagctctcagacctgccatcctcctcctcgcagctgaccgtc 1127



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 40/44 (90%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                        
Query: 57   agtttcatctcaaagcactcaaggcttgatctccctgcatacaa 100
            ||||||||||||| |||||||||||| |||||| ||| ||||||
Sbjct: 1351 agtttcatctcaa-gcactcaaggctcgatctcactgtatacaa 1309



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 316  gactgggagctgctttgctcctgag 340
            |||||||||||||||||||| ||||
Sbjct: 1060 gactgggagctgctttgctcttgag 1036
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                        
Query: 199     gatcatttccagccatagccctcggatctgccatcttcttcctcgccgctgaccgtc 255
               ||||||||||||||||||| ||| || |||||||| || ||||||| ||||||||||
Sbjct: 1046682 gatcatttccagccatagctctcagacctgccatcctcctcctcgcagctgaccgtc 1046626



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 40/44 (90%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                           
Query: 57      agtttcatctcaaagcactcaaggcttgatctccctgcatacaa 100
               ||||||||||||| |||||||||||| |||||| ||| ||||||
Sbjct: 1046850 agtttcatctcaa-gcactcaaggctcgatctcactgtatacaa 1046808



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 316     gactgggagctgctttgctcctgag 340
               |||||||||||||||||||| ||||
Sbjct: 1046559 gactgggagctgctttgctcttgag 1046535
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>dbj|AK070421.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048M12, full
            insert sequence
          Length = 1473

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                     
Query: 199  gatcatttccagccatagccctcggatctgccatcttcttcctcgccgctgaccgtc 255
            ||||||||||||||||||| ||| || |||||||| || ||||||| ||||||||||
Sbjct: 1183 gatcatttccagccatagctctcagacctgccatcctcctcctcgcagctgaccgtc 1127



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 40/44 (90%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                        
Query: 57   agtttcatctcaaagcactcaaggcttgatctccctgcatacaa 100
            ||||||||||||| |||||||||||| |||||| ||| ||||||
Sbjct: 1351 agtttcatctcaa-gcactcaaggctcgatctcactgtatacaa 1309



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 316  gactgggagctgctttgctcctgag 340
            |||||||||||||||||||| ||||
Sbjct: 1060 gactgggagctgctttgctcttgag 1036
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>dbj|AP004262.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022B05
          Length = 151317

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                      
Query: 199   gatcatttccagccatagccctcggatctgccatcttcttcctcgccgctgaccgtc 255
             ||||||||||||||||||| ||| || |||||||| || ||||||| ||||||||||
Sbjct: 44270 gatcatttccagccatagctctcagacctgccatcctcctcctcgcagctgaccgtc 44214



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 40/44 (90%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                         
Query: 57    agtttcatctcaaagcactcaaggcttgatctccctgcatacaa 100
             ||||||||||||| |||||||||||| |||||| ||| ||||||
Sbjct: 44438 agtttcatctcaa-gcactcaaggctcgatctcactgtatacaa 44396



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 316   gactgggagctgctttgctcctgag 340
             |||||||||||||||||||| ||||
Sbjct: 44147 gactgggagctgctttgctcttgag 44123
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>gb|BT016414.1| Zea mays clone Contig247 mRNA sequence
          Length = 1385

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 316 gactgggagctgctttgctcctgagttatccagagccctcccatgagcacgat 368
           ||||| ||||||||||||||||| |  ||||| ||||||||||  ||||||||
Sbjct: 990 gactgcgagctgctttgctcctgcggaatccacagccctcccaccagcacgat 938



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                
Query: 200  atcatttccagccatagccctcggatctgccatcttcttcctcgccgctgac 251
            |||||||||||||||||| |||||| |  || ||||| ||||||| ||||||
Sbjct: 1106 atcatttccagccatagctctcggaccgtccgtcttcctcctcgcagctgac 1055
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>gb|AC129189.3| Mus musculus BAC clone RP24-67O22 from chromosome 15, complete sequence
          Length = 152947

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 123    ctgtctcaggaatctctcaaga 144
              ||||||||||||||||||||||
Sbjct: 127740 ctgtctcaggaatctctcaaga 127761
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>emb|BX664703.21| Zebrafish DNA sequence from clone DKEYP-74A8 in linkage group 6,
             complete sequence
          Length = 193958

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 174   tgaacaaaaactaatataacttgttgatca 203
             |||||||||||||||||  |||||||||||
Sbjct: 46557 tgaacaaaaactaatatggcttgttgatca 46586
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>emb|AL662982.3|OSJN00184 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083I11,
             complete sequence
          Length = 149085

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 225   tctgccatcttcttcctcgccg 246
             ||||||||||||||||||||||
Sbjct: 76082 tctgccatcttcttcctcgccg 76061
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>gb|AC101771.11| Mus musculus chromosome 15, clone RP24-104H19, complete sequence
          Length = 153992

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 123   ctgtctcaggaatctctcaaga 144
             ||||||||||||||||||||||
Sbjct: 87391 ctgtctcaggaatctctcaaga 87412
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 225     tctgccatcttcttcctcgccg 246
               ||||||||||||||||||||||
Sbjct: 7429729 tctgccatcttcttcctcgccg 7429708
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>gb|AC161235.6| Mus musculus chromosome 3, clone RP24-86C19, complete sequence
          Length = 206729

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 97     acaacaaaaaagactacacta 117
              |||||||||||||||||||||
Sbjct: 127594 acaacaaaaaagactacacta 127574
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>gb|AC104908.10| Mus musculus chromosome 3, clone RP23-325M18, complete sequence
          Length = 231792

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 97     acaacaaaaaagactacacta 117
              |||||||||||||||||||||
Sbjct: 212679 acaacaaaaaagactacacta 212699
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>gb|L40609.1|PFAVAR23A Plasmodium falciparum (strain FCR3) variant-specific surface protein
             (var-2, var-3) genes, complete cds's
          Length = 22243

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 182   aactaatataacttgttgatcattt 206
             ||||||||||| |||||||||||||
Sbjct: 17487 aactaatataatttgttgatcattt 17463
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>gb|AC154098.6| Mus musculus chromosome 3, clone RP23-196L9, complete sequence
          Length = 201332

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 97    acaacaaaaaagactacacta 117
             |||||||||||||||||||||
Sbjct: 18920 acaacaaaaaagactacacta 18940
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>gb|AC153386.3| Mus musculus 6 BAC RP23-198D7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 170561

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 47    taacagccagagtttcatctcaaa 70
             |||||||| |||||||||||||||
Sbjct: 35537 taacagcctgagtttcatctcaaa 35514
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>gb|AY749413.2| Culex pipiens pallens deltamethrin resistance-associated NYD-OP7
           mRNA, complete cds
          Length = 1437

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 218 cctcggatctgccatcttct 237
           ||||||||||||||||||||
Sbjct: 278 cctcggatctgccatcttct 297
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>ref|XM_753565.1| Ustilago maydis 521 hypothetical protein (UM02511.1) partial mRNA
          Length = 3942

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 226  ctgccatcttcttcctcgcc 245
            ||||||||||||||||||||
Sbjct: 2084 ctgccatcttcttcctcgcc 2103
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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 6       aactgtaactagtataacct 25
               ||||||||||||||||||||
Sbjct: 1345877 aactgtaactagtataacct 1345858
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>emb|BX324159.6| Zebrafish DNA sequence from clone CH211-10O1 in linkage group 21,
             complete sequence
          Length = 178610

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   gaacaaaaactaatataact 194
             ||||||||||||||||||||
Sbjct: 73766 gaacaaaaactaatataact 73747
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>emb|BX682544.5| Zebrafish DNA sequence from clone CH211-189G6 in linkage group 20,
             complete sequence
          Length = 163093

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 83    tgatctccctgcatacaacaaaaa 106
             |||| |||||||||||||||||||
Sbjct: 90849 tgatgtccctgcatacaacaaaaa 90872
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>gb|AC099713.5| Mus musculus chromosome 15, clone RP23-447B6, complete sequence
          Length = 199130

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 179    aaaaactaatataacttgttgatc 202
              |||||||||||||||||| |||||
Sbjct: 140613 aaaaactaatataacttgatgatc 140636


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,531,284
Number of Sequences: 3902068
Number of extensions: 3531284
Number of successful extensions: 62975
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62864
Number of HSP's gapped (non-prelim): 111
length of query: 407
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 385
effective length of database: 17,147,199,772
effective search space: 6601671912220
effective search space used: 6601671912220
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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