ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53b12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476420.1| Oryza sativa (japonica cultivar-group), mRNA 74 3e-10
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
3dbj|AK070421.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
4dbj|AP004262.2| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
5gb|BT016414.1| Zea mays clone Contig247 mRNA sequence 56 6e-05
6gb|AC129189.3| Mus musculus BAC clone RP24-67O22 from chromosome... 44 0.23
7emb|BX664703.21| Zebrafish DNA sequence from clone DKEYP-74A8 in... 44 0.23
8gb|AC101771.11| Mus musculus chromosome 15, clone RP24-104H19, c... 44 0.23
9gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 42 0.91
10gb|AC161235.6| Mus musculus chromosome 3, clone RP24-86C19, comp... 42 0.91
11gb|AC087762.20| Homo sapiens chromosome 15, clone RP11-76I7, com... 42 0.91
12gb|AC104908.10| Mus musculus chromosome 3, clone RP23-325M18, co... 42 0.91
13gb|L40609.1|PFAVAR23A Plasmodium falciparum (strain FCR3) varian... 42 0.91
14gb|AC154098.6| Mus musculus chromosome 3, clone RP23-196L9, comp... 42 0.91
15gb|AC153386.3| Mus musculus 6 BAC RP23-198D7 (Roswell Park Cance... 40 3.6
16ref|NM_001031096.1| Gallus gallus additional sex combs like 2 (D... 40 3.6
17ref|XM_515425.1| PREDICTED: Pan troglodytes LOC459171 (LOC459171... 40 3.6
18emb|AL662982.3|OSJN00184 Oryza sativa genomic DNA, chromosome 4,... 40 3.6
19emb|AJ719496.1| Gallus gallus mRNA for hypothetical protein, clo... 40 3.6
20gb|AF441476.1|F441466S11 Homo sapiens alternate SOS1 (SOS1) gene... 40 3.6
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
22gb|AC019171.4| Homo sapiens BAC clone RP11-173C1 from 2, complet... 40 3.6
23emb|BX324159.6| Zebrafish DNA sequence from clone CH211-10O1 in ... 40 3.6
24emb|BX682544.5| Zebrafish DNA sequence from clone CH211-189G6 in... 40 3.6
25gb|AF102576.1|AF102576 Cloning vector pSOS, complete sequence 40 3.6
26gb|AC099713.5| Mus musculus chromosome 15, clone RP23-447B6, com... 40 3.6
27ref|NM_005633.2| Homo sapiens son of sevenless homolog 1 (Drosop... 40 3.6
28dbj|AP002851.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 3.6
29dbj|AB209140.1| Homo sapiens mRNA for son of sevenless homolog 1... 40 3.6
30gb|L13857.1|HUMGNEFA Human guanine nucleotide exchange factor mR... 40 3.6 
>ref|XM_476420.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1473

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                     
Query: 167  gatcatttccagccatagctctcggatctgccatcttcttcctcgctgctgaccgtc 223
            ||||||||||||||||||||||| || |||||||| || ||||||| ||||||||||
Sbjct: 1183 gatcatttccagccatagctctcagacctgccatcctcctcctcgcagctgaccgtc 1127



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                        
Query: 25   agtttcatctcaaagcactcaagggttgatctccctgcatacaa 68
            ||||||||||||| |||||||||| | |||||| ||| ||||||
Sbjct: 1351 agtttcatctcaa-gcactcaaggctcgatctcactgtatacaa 1309
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                        
Query: 167     gatcatttccagccatagctctcggatctgccatcttcttcctcgctgctgaccgtc 223
               ||||||||||||||||||||||| || |||||||| || ||||||| ||||||||||
Sbjct: 1046682 gatcatttccagccatagctctcagacctgccatcctcctcctcgcagctgaccgtc 1046626



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                           
Query: 25      agtttcatctcaaagcactcaagggttgatctccctgcatacaa 68
               ||||||||||||| |||||||||| | |||||| ||| ||||||
Sbjct: 1046850 agtttcatctcaa-gcactcaaggctcgatctcactgtatacaa 1046808
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>dbj|AK070421.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048M12, full
            insert sequence
          Length = 1473

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                     
Query: 167  gatcatttccagccatagctctcggatctgccatcttcttcctcgctgctgaccgtc 223
            ||||||||||||||||||||||| || |||||||| || ||||||| ||||||||||
Sbjct: 1183 gatcatttccagccatagctctcagacctgccatcctcctcctcgcagctgaccgtc 1127



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                        
Query: 25   agtttcatctcaaagcactcaagggttgatctccctgcatacaa 68
            ||||||||||||| |||||||||| | |||||| ||| ||||||
Sbjct: 1351 agtttcatctcaa-gcactcaaggctcgatctcactgtatacaa 1309
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>dbj|AP004262.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022B05
          Length = 151317

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                      
Query: 167   gatcatttccagccatagctctcggatctgccatcttcttcctcgctgctgaccgtc 223
             ||||||||||||||||||||||| || |||||||| || ||||||| ||||||||||
Sbjct: 44270 gatcatttccagccatagctctcagacctgccatcctcctcctcgcagctgaccgtc 44214



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                         
Query: 25    agtttcatctcaaagcactcaagggttgatctccctgcatacaa 68
             ||||||||||||| |||||||||| | |||||| ||| ||||||
Sbjct: 44438 agtttcatctcaa-gcactcaaggctcgatctcactgtatacaa 44396
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>gb|BT016414.1| Zea mays clone Contig247 mRNA sequence
          Length = 1385

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 168  atcatttccagccatagctctcggatctgccatcttcttcctcgctgctgac 219
            ||||||||||||||||||||||||| |  || ||||| ||||||| ||||||
Sbjct: 1106 atcatttccagccatagctctcggaccgtccgtcttcctcctcgcagctgac 1055
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>gb|AC129189.3| Mus musculus BAC clone RP24-67O22 from chromosome 15, complete sequence
          Length = 152947

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 91     ctgtctcaggaatctctcaaga 112
              ||||||||||||||||||||||
Sbjct: 127740 ctgtctcaggaatctctcaaga 127761
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>emb|BX664703.21| Zebrafish DNA sequence from clone DKEYP-74A8 in linkage group 6,
             complete sequence
          Length = 193958

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 142   tgaacaaaaactaatataacttgttgatca 171
             |||||||||||||||||  |||||||||||
Sbjct: 46557 tgaacaaaaactaatatggcttgttgatca 46586
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>gb|AC101771.11| Mus musculus chromosome 15, clone RP24-104H19, complete sequence
          Length = 153992

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 91    ctgtctcaggaatctctcaaga 112
             ||||||||||||||||||||||
Sbjct: 87391 ctgtctcaggaatctctcaaga 87412
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 211    gctgctgaccgtcaccgatga 231
              |||||||||||||||||||||
Sbjct: 578079 gctgctgaccgtcaccgatga 578099
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>gb|AC161235.6| Mus musculus chromosome 3, clone RP24-86C19, complete sequence
          Length = 206729

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 65     acaacaaaaaagactacacta 85
              |||||||||||||||||||||
Sbjct: 127594 acaacaaaaaagactacacta 127574
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>gb|AC087762.20| Homo sapiens chromosome 15, clone RP11-76I7, complete sequence
          Length = 104836

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 200   tcttcttcctcgctgctgacc 220
             |||||||||||||||||||||
Sbjct: 59520 tcttcttcctcgctgctgacc 59540
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>gb|AC104908.10| Mus musculus chromosome 3, clone RP23-325M18, complete sequence
          Length = 231792

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 65     acaacaaaaaagactacacta 85
              |||||||||||||||||||||
Sbjct: 212679 acaacaaaaaagactacacta 212699
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>gb|L40609.1|PFAVAR23A Plasmodium falciparum (strain FCR3) variant-specific surface protein
             (var-2, var-3) genes, complete cds's
          Length = 22243

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 150   aactaatataacttgttgatcattt 174
             ||||||||||| |||||||||||||
Sbjct: 17487 aactaatataatttgttgatcattt 17463
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>gb|AC154098.6| Mus musculus chromosome 3, clone RP23-196L9, complete sequence
          Length = 201332

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 65    acaacaaaaaagactacacta 85
             |||||||||||||||||||||
Sbjct: 18920 acaacaaaaaagactacacta 18940
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>gb|AC153386.3| Mus musculus 6 BAC RP23-198D7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 170561

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 15    taacagccagagtttcatctcaaa 38
             |||||||| |||||||||||||||
Sbjct: 35537 taacagcctgagtttcatctcaaa 35514
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>ref|NM_001031096.1| Gallus gallus additional sex combs like 2 (Drosophila) (ASXL2), mRNA
          Length = 5430

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 198  catcttcttcctcgctgctg 217
            ||||||||||||||||||||
Sbjct: 3640 catcttcttcctcgctgctg 3621
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>ref|XM_515425.1| PREDICTED: Pan troglodytes LOC459171 (LOC459171), mRNA
          Length = 3834

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 39   gcactcaagggttgatctcc 58
            ||||||||||||||||||||
Sbjct: 1898 gcactcaagggttgatctcc 1879
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>emb|AL662982.3|OSJN00184 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083I11,
             complete sequence
          Length = 149085

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   tctgccatcttcttcctcgc 212
             ||||||||||||||||||||
Sbjct: 76082 tctgccatcttcttcctcgc 76063
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>emb|AJ719496.1| Gallus gallus mRNA for hypothetical protein, clone 2n14
          Length = 5430

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 198  catcttcttcctcgctgctg 217
            ||||||||||||||||||||
Sbjct: 3640 catcttcttcctcgctgctg 3621
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>gb|AF441476.1|F441466S11 Homo sapiens alternate SOS1 (SOS1) gene, exons 13 and 14
          Length = 919

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 39  gcactcaagggttgatctcc 58
           ||||||||||||||||||||
Sbjct: 368 gcactcaagggttgatctcc 349
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 193     tctgccatcttcttcctcgc 212
               ||||||||||||||||||||
Sbjct: 7429729 tctgccatcttcttcctcgc 7429710
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>gb|AC019171.4| Homo sapiens BAC clone RP11-173C1 from 2, complete sequence
          Length = 180445

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    gcactcaagggttgatctcc 58
             ||||||||||||||||||||
Sbjct: 87293 gcactcaagggttgatctcc 87312
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>emb|BX324159.6| Zebrafish DNA sequence from clone CH211-10O1 in linkage group 21,
             complete sequence
          Length = 178610

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 143   gaacaaaaactaatataact 162
             ||||||||||||||||||||
Sbjct: 73766 gaacaaaaactaatataact 73747
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>emb|BX682544.5| Zebrafish DNA sequence from clone CH211-189G6 in linkage group 20,
             complete sequence
          Length = 163093

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 51    tgatctccctgcatacaacaaaaa 74
             |||| |||||||||||||||||||
Sbjct: 90849 tgatgtccctgcatacaacaaaaa 90872
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>gb|AF102576.1|AF102576 Cloning vector pSOS, complete sequence
          Length = 11259

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 39   gcactcaagggttgatctcc 58
            ||||||||||||||||||||
Sbjct: 2038 gcactcaagggttgatctcc 2019
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>gb|AC099713.5| Mus musculus chromosome 15, clone RP23-447B6, complete sequence
          Length = 199130

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 147    aaaaactaatataacttgttgatc 170
              |||||||||||||||||| |||||
Sbjct: 140613 aaaaactaatataacttgatgatc 140636
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>ref|NM_005633.2| Homo sapiens son of sevenless homolog 1 (Drosophila) (SOS1), mRNA
          Length = 4002

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 39   gcactcaagggttgatctcc 58
            ||||||||||||||||||||
Sbjct: 2015 gcactcaagggttgatctcc 1996
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>dbj|AP002851.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1042C11
          Length = 200610

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     catctcaaagcactcaaggg 49
              ||||||||||||||||||||
Sbjct: 141078 catctcaaagcactcaaggg 141059
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>dbj|AB209140.1| Homo sapiens mRNA for son of sevenless homolog 1 variant protein
          Length = 3107

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 39   gcactcaagggttgatctcc 58
            ||||||||||||||||||||
Sbjct: 1027 gcactcaagggttgatctcc 1008
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>gb|L13857.1|HUMGNEFA Human guanine nucleotide exchange factor mRNA, complete cds
          Length = 4002

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 39   gcactcaagggttgatctcc 58
            ||||||||||||||||||||
Sbjct: 2015 gcactcaagggttgatctcc 1996


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,710,270
Number of Sequences: 3902068
Number of extensions: 2710270
Number of successful extensions: 49746
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49655
Number of HSP's gapped (non-prelim): 91
length of query: 277
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 255
effective length of database: 17,147,199,772
effective search space: 4372535941860
effective search space used: 4372535941860
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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