ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1RPB1_PLAFD (P14248) DNA-directed RNA polymerase II largest subun... 42 3e-04
2RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subun... 41 6e-04
3RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subun... 41 6e-04
4RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subun... 40 0.002
5RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subun... 39 0.002
6RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subun... 39 0.002
7RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subun... 39 0.002
8RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subun... 39 0.002
9RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subun... 39 0.002
10RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subun... 39 0.003
11RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subun... 39 0.003
12RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subun... 39 0.003
13RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subun... 37 0.015
14FRE3_YEAST (Q08905) Ferric reductase transmembrane component 3 p... 28 4.0
15DNAA_STRRE (Q9ZH76) Chromosomal replication initiator protein dnaA 28 4.0
16HEM1_CLOTE (Q897K9) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR) 28 6.8
17IL3_SHEEP (Q06435) Interleukin-3 precursor (IL-3) (Multipotentia... 28 6.8
18RNFD_BUCAI (P57216) Electron transport complex protein rnfD 27 8.9
19T2R40_PAPHA (Q646F2) Taste receptor type 2 member 40 (T2R40) 27 8.9
20P200_MYCGE (Q49429) Protein P200 27 8.9 
>RPB1_PLAFD (P14248) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 2452

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +3

Query: 219  SLTS*YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTP 398
            ++ S YN + P +++  P+Y+     Y   +P+Y    P YS   P Y   SP Y+  +P
Sbjct: 2278 NVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSP 2337

Query: 399  GY 404
             Y
Sbjct: 2338 KY 2339



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P+++   P+Y+     Y   +P+Y    P YS   P Y   SP Y+  +P Y
Sbjct: 2290 YSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKY 2346



 Score = 37.4 bits (85), Expect = 0.009
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +3

Query: 201  VVHKIKSLTS*-YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASP 377
            V+  + S+TS  Y+   P+++   P+Y+     Y   +P+Y    P YS   P Y   SP
Sbjct: 2285 VMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSP 2344

Query: 378  SYTMPTP 398
             Y+  +P
Sbjct: 2345 KYSPTSP 2351



 Score = 34.7 bits (78), Expect = 0.055
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*-----------YSIVEPGYHTASPS 380
            Y+   P+++   P+Y+     Y   +P+Y    P            YSI  P +   SP+
Sbjct: 2318 YSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPVAQNIASPNYSPYSITSPKFSPTSPA 2377

Query: 381  YTMPTPGYD 407
            Y++ +P YD
Sbjct: 2378 YSISSPVYD 2386
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>RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1) (B220)
          Length = 1733

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +PGY
Sbjct: 1654 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGY 1710



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1640 YSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 1696



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1633 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1689



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1626 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1682



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1619 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSY 1675



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1605 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1661



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1598 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1654



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1591 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1647



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1584 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1640



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1577 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1633



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1570 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1626



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1563 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1619



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1556 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1612



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1549 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1605



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1547 PTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1598



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y
Sbjct: 1647 YSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSY 1703



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y
Sbjct: 1612 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSY 1668



 Score = 37.0 bits (84), Expect = 0.011
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP Y+  +P Y
Sbjct: 1661 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAY 1717



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P  +   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1540 PGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1591



 Score = 35.8 bits (81), Expect = 0.025
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYT 386
            Y+   P ++   P Y+     Y   +P Y    P YS   PGY   SP+Y+
Sbjct: 1668 YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYS 1718



 Score = 35.8 bits (81), Expect = 0.025
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 270  PRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P + +   G+   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1533 PGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1577



 Score = 33.9 bits (76), Expect = 0.095
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P   +  P ++     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1533 PGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1584
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>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1840

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   PGY   SPSY+  +P Y
Sbjct: 1664 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSY 1720



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +PGY
Sbjct: 1650 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY 1706



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+    GY   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1566 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1622



 Score = 40.0 bits (92), Expect = 0.001
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +3

Query: 270  PRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P Y+    GY   +P Y    P YS   PGY   SP+Y+  +PGY
Sbjct: 1543 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY 1587



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+    GY   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1552 YSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY 1608



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P ++   P Y+    GY   +P Y    P YS   PGY   SP+Y+  +P Y
Sbjct: 1550 PGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1601



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1643 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1699



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1636 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1692



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1629 YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1685



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1622 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1678



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1615 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY 1671



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1587 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1643



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYD 407
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY   +P Y+
Sbjct: 1671 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYN 1728



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y
Sbjct: 1608 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY 1664



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y
Sbjct: 1601 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY 1657



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y
Sbjct: 1594 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAY 1650



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1585 PGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1636



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1573 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1629



 Score = 37.4 bits (85), Expect = 0.009
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP Y+  +P Y
Sbjct: 1657 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1713



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P ++   P Y+    GY   +P Y    P YS   P Y  +SP Y+  +P Y
Sbjct: 1543 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY 1594



 Score = 36.2 bits (82), Expect = 0.019
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1559 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1615



 Score = 33.9 bits (76), Expect = 0.095
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY   +  Y
Sbjct: 1678 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKY 1734



 Score = 33.1 bits (74), Expect = 0.16
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 309  TPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            +P Y    P YS   PGY   SP Y+  +PGY
Sbjct: 1542 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGY 1573



 Score = 30.8 bits (68), Expect = 0.80
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYT 386
            Y+   P ++   P Y+    GY   +P Y    P Y    P Y+  S  Y+
Sbjct: 1685 YSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYS 1735



 Score = 30.4 bits (67), Expect = 1.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 291  SGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTP 398
            S Y   +P Y    P YS   P Y  +SP+Y+  +P
Sbjct: 1751 SPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSP 1786



 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 270  PRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P Y+     Y   +P Y    P YS   P    ASP Y+ P+ GY
Sbjct: 1758 PNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYS-PSAGY 1801



 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 318  YDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1753 YSPTSPNYSPTSPSYSPTSPSYSPSSPTY 1781
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>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1752

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1606 YSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1662



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1592 YSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1648



 Score = 39.7 bits (91), Expect = 0.002
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1585 YSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1641



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1599 YSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1655



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1578 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSY 1634



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1690 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1746



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1683 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1739



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1676 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1732



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1669 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1725



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1662 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1718



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1655 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1711



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1648 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1704



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1641 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1697



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1634 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1690



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1627 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1683



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1620 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1676



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1613 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1669



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1576 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSY 1627



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P +    P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1569 PAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSY 1620



 Score = 36.2 bits (82), Expect = 0.019
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTP 398
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P
Sbjct: 1697 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1751



 Score = 35.0 bits (79), Expect = 0.042
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P + +  P Y+    GY   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1549 PGYGLTSPSYSPSSPGYS-TSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSY 1599



 Score = 31.2 bits (69), Expect = 0.61
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPS 380
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPS
Sbjct: 1704 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1752



 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
 Frame = +3

Query: 306  VTPRYDMVHP*YSIVEPGYHT------ASPSYTMPTPGY 404
            ++P Y +  P YS   PGY T      +SPSY+  +P Y
Sbjct: 1547 MSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSY 1585



 Score = 28.9 bits (63), Expect = 3.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 333  P*YSIVEPGYHTASPSYTMPTPGY 404
            P  S + PGY   SPSY+  +PGY
Sbjct: 1542 PFSSAMSPGYGLTSPSYSPSSPGY 1565
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>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (RPB1) (Fragment)
          Length = 467

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P+++   P+Y+     Y   TP+Y    P YS   P Y   SP Y+  +P Y
Sbjct: 357 YSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTY 413



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+YT  +P Y
Sbjct: 224 YSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNY 280



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+YT  +P Y
Sbjct: 203 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSY 259



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 126 YSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 182



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 119 YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 175



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P +    P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 245 YSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSY 301



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 189 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 245



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 182 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 238



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 175 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 231



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 168 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 224



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 161 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 217



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 154 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 210



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 147 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 203



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 140 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 196



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 133 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 189



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 112 YSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 168



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 210 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSY 266



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 249 PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 110 PSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 161



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y      Y   +P Y    P YS   P Y  +SP YT  +P Y
Sbjct: 259 YSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTY 315



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y      Y   +P Y    P Y+   P Y   SPSY+  +P Y
Sbjct: 238 YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSY 294



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P Y+   P Y   SPSY+  +P Y
Sbjct: 217 YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNY 273



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P++    P Y+     Y   +P+Y    P YS   P Y   SP+Y+  TP Y
Sbjct: 329 YSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKY 385



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y    P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 252 YTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 308



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y
Sbjct: 196 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNY 252



 Score = 37.4 bits (85), Expect = 0.009
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y    P+++   P+Y+     Y   +P Y    P YS   P Y   SP YT  +P Y
Sbjct: 350 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKY 406



 Score = 37.4 bits (85), Expect = 0.009
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P +    P Y+     Y   +P Y    P YS   P Y   SP+YT  +P Y
Sbjct: 266 YSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSY 322



 Score = 37.4 bits (85), Expect = 0.009
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y
Sbjct: 231 YSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSY 287



 Score = 37.0 bits (84), Expect = 0.011
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +PRY    P Y+   P Y  +SPSY+  +P Y
Sbjct: 280 YSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 336



 Score = 36.2 bits (82), Expect = 0.019
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P+++   P Y+     Y   +P Y    P Y+   P Y   SP+Y+  +P Y
Sbjct: 364 YSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 420



 Score = 36.2 bits (82), Expect = 0.019
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 249 PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           P +    P+Y+     Y   +P+Y    P YS   P Y   SP+Y+  +P Y
Sbjct: 348 PEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVY 399



 Score = 35.8 bits (81), Expect = 0.025
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTP 398
           Y+   P+++   P Y+     Y   +P+Y    P YS   P Y   SP+Y+  +P
Sbjct: 378 YSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSP 432



 Score = 35.8 bits (81), Expect = 0.025
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +3

Query: 249 PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           PR+    P Y      Y   +P Y    P Y+   P Y  +SP YT  +P Y
Sbjct: 306 PRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY 357



 Score = 35.4 bits (80), Expect = 0.033
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y    P ++   P Y+     Y   +P Y    P Y+   P Y  +SPSY+  +P Y
Sbjct: 273 YTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSY 329



 Score = 35.0 bits (79), Expect = 0.042
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +3

Query: 249 PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           P ++   P+Y      Y   +P Y    P YS   P Y   SP Y+  +P Y
Sbjct: 327 PSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTY 378



 Score = 34.7 bits (78), Expect = 0.055
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P+Y+     Y   +P Y    P YS   P Y   SP Y+  +P Y
Sbjct: 371 YSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTY 427



 Score = 34.7 bits (78), Expect = 0.055
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   PRY      Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 294 YSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEY 350



 Score = 34.3 bits (77), Expect = 0.072
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP YT  +P Y
Sbjct: 287 YSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSY 343



 Score = 33.9 bits (76), Expect = 0.095
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y    P ++   P Y      Y   +P+Y    P YS   P Y   +P Y+  +P Y
Sbjct: 336 YTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTY 392



 Score = 33.5 bits (75), Expect = 0.12
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*---YSIVEPGYHTASPSYTMPTP 398
           Y    P+++   P Y+     Y   +P Y    P    YS   PGY   SP+Y++ +P
Sbjct: 399 YTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSP 456



 Score = 32.7 bits (73), Expect = 0.21
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +3

Query: 249 PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           P +    P Y+     Y   +P+Y    P YS   P Y   SP Y+  +P Y
Sbjct: 313 PTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKY 364



 Score = 32.7 bits (73), Expect = 0.21
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 294 GYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           GY   +P Y    P YS   P Y   SP+Y+  +P Y
Sbjct: 104 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSY 140



 Score = 32.0 bits (71), Expect = 0.36
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASP---SYTMPTPGY 404
           Y+   P ++   P Y      Y   +P Y    P YS   P Y   SP   +Y+  +PGY
Sbjct: 385 YSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGY 444



 Score = 31.2 bits (69), Expect = 0.61
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +3

Query: 249 PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           P ++   P Y+     Y   +P Y    P Y+   P Y   SP Y+  +P Y
Sbjct: 320 PSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKY 371
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>RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (Fragment)
          Length = 902

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y  +SPSY+  +P Y
Sbjct: 819 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSY 875



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 812 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSY 868



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 805 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 861



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 798 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 854



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 791 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 847



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 784 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 840



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 777 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 833



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 742 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSY 798



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y  +SPSY+  +P Y
Sbjct: 826 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSY 882



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 770 YSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 826



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 763 YSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 819



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 749 YSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 805



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 756 YSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 812



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 735 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSY 791



 Score = 37.0 bits (84), Expect = 0.011
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 249 PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 726 PTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFY 777



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP Y+  +P Y
Sbjct: 728 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSY 784



 Score = 35.4 bits (80), Expect = 0.033
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y  +SPSY+  +P +
Sbjct: 833  YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPTF 889



 Score = 31.2 bits (69), Expect = 0.61
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 234 YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYT 386
           Y+   P ++   P Y+     Y   +P Y    P YS   P Y  +SP++T
Sbjct: 840 YSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPTFT 890



 Score = 31.2 bits (69), Expect = 0.61
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 309 TPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
           +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 725 SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 756
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>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1852

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y  +SPSY+  +P Y
Sbjct: 1612 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSY 1668



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +3

Query: 243  VVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            V P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1608 VSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSY 1661



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y  +SPSY+  +P Y
Sbjct: 1619 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRY 1675



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIV--VSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            ++   P ++   P Y+     +G   V+P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1582 FSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1640



 Score = 36.2 bits (82), Expect = 0.019
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +PRY    P YS   P Y   SP+Y+  +P Y
Sbjct: 1647 YSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTY 1703



 Score = 35.0 bits (79), Expect = 0.042
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 270  PRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYD 407
            P+Y+     Y   +P Y    P YS   P Y  +SP+YT  +P Y+
Sbjct: 1721 PKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYN 1766



 Score = 35.0 bits (79), Expect = 0.042
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y  +SP Y+  +P Y
Sbjct: 1626 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTY 1682



 Score = 34.7 bits (78), Expect = 0.055
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYD 407
            P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y+
Sbjct: 1659 PSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYE 1711



 Score = 34.3 bits (77), Expect = 0.072
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYD 407
            P+++   P Y    S     + +Y    P YS   P Y  ASPSY+  +P YD
Sbjct: 1797 PQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTYSPASPSYSPSSPTYD 1849



 Score = 33.9 bits (76), Expect = 0.095
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y     GY   +P+Y    P YS   P Y   SP Y+  +P Y
Sbjct: 1696 YSPTSPTYSPTSPSYESG-GGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQY 1751



 Score = 33.9 bits (76), Expect = 0.095
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y
Sbjct: 1640 YSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTY 1696



 Score = 33.9 bits (76), Expect = 0.095
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y
Sbjct: 1633 YSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTY 1689



 Score = 33.5 bits (75), Expect = 0.12
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTP 398
            P+++   P Y+     Y   +P+Y    P YS   P Y  +SP+Y   +P
Sbjct: 1721 PKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSP 1770



 Score = 33.5 bits (75), Expect = 0.12
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEP------GYHTASPSYTMPTPGY 404
            PR++   P Y+     Y   +P Y    P YS   P      GY  +SP Y+  +P Y
Sbjct: 1673 PRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTY 1730



 Score = 31.6 bits (70), Expect = 0.47
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P +    P YN   S     +P+Y    P YS   P Y  +SP Y+  +P Y
Sbjct: 1756 PTYTPSSPTYN-PTSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTY 1806



 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTP 398
            P +N   PR       Y   +P Y    P Y+   P Y   SP+YT P+P
Sbjct: 1763 PTYNPTSPR-GFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYT-PSP 1810



 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 13/70 (18%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRY-------------DMVHP*YSIVEPGYHTAS 374
            Y+   P ++   P+Y+     Y   +P Y                 P YS   P Y   S
Sbjct: 1730 YSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTS 1789

Query: 375  PSYTMPTPGY 404
            PSYT  +P Y
Sbjct: 1790 PSYTPSSPQY 1799
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>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P+++   P+Y+     Y   TP+Y    P YS   P Y   SP Y+  +P Y
Sbjct: 1860 YSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTY 1916



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+YT  +P Y
Sbjct: 1727 YSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNY 1783



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+YT  +P Y
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSY 1762



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1629 YSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1685



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1622 YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1678



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P +    P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1748 YSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSY 1804



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1692 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 1748



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1685 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1741



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1678 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1734



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1671 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1727



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1664 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1720



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1657 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1713



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1650 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1706



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1643 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1699



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1636 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1692



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1615 YSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1671



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1713 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSY 1769



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1613 PSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1664



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y      Y   +P Y    P YS   P Y  +SP YT  +P Y
Sbjct: 1762 YSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTY 1818



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y      Y   +P Y    P Y+   P Y   SPSY+  +P Y
Sbjct: 1741 YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSY 1797



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P Y+   P Y   SPSY+  +P Y
Sbjct: 1720 YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNY 1776



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P++    P Y+     Y   +P+Y    P YS   P Y   SP+Y+  TP Y
Sbjct: 1832 YSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKY 1888



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y    P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1755 YTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 1811



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y
Sbjct: 1699 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNY 1755



 Score = 37.4 bits (85), Expect = 0.009
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y    P+++   P+Y+     Y   +P Y    P YS   P Y   SP YT  +P Y
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKY 1909



 Score = 37.4 bits (85), Expect = 0.009
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P +    P Y+     Y   +P Y    P YS   P Y   SP+YT  +P Y
Sbjct: 1769 YSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSY 1825



 Score = 37.4 bits (85), Expect = 0.009
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y
Sbjct: 1734 YSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSY 1790



 Score = 37.0 bits (84), Expect = 0.011
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +PRY    P Y+   P Y  +SPSY+  +P Y
Sbjct: 1783 YSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 1839



 Score = 36.2 bits (82), Expect = 0.019
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P+++   P Y+     Y   +P Y    P Y+   P Y   SP+Y+  +P Y
Sbjct: 1867 YSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923



 Score = 36.2 bits (82), Expect = 0.019
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P +    P+Y+     Y   +P+Y    P YS   P Y   SP+Y+  +P Y
Sbjct: 1851 PEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVY 1902



 Score = 35.8 bits (81), Expect = 0.025
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTP 398
            Y+   P+++   P Y+     Y   +P+Y    P YS   P Y   SP+Y+  +P
Sbjct: 1881 YSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSP 1935



 Score = 35.8 bits (81), Expect = 0.025
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            PR+    P Y      Y   +P Y    P Y+   P Y  +SP YT  +P Y
Sbjct: 1809 PRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKY 1860



 Score = 35.4 bits (80), Expect = 0.033
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y    P ++   P Y+     Y   +P Y    P Y+   P Y  +SPSY+  +P Y
Sbjct: 1776 YTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSY 1832



 Score = 35.0 bits (79), Expect = 0.042
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P ++   P+Y      Y   +P Y    P YS   P Y   SP Y+  +P Y
Sbjct: 1830 PSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTY 1881



 Score = 34.7 bits (78), Expect = 0.055
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P+Y+     Y   +P Y    P YS   P Y   SP Y+  +P Y
Sbjct: 1874 YSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTY 1930



 Score = 34.7 bits (78), Expect = 0.055
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   PRY      Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1797 YSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEY 1853



 Score = 34.3 bits (77), Expect = 0.072
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P +    P Y+     Y   +P+Y    P YS   P Y  ASP Y+  +P Y
Sbjct: 1816 PTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKY 1867



 Score = 34.3 bits (77), Expect = 0.072
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP YT  +P Y
Sbjct: 1790 YSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSY 1846



 Score = 33.9 bits (76), Expect = 0.095
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y    P ++   P Y      Y   +P+Y    P YS   P Y   +P Y+  +P Y
Sbjct: 1839 YTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTY 1895



 Score = 33.5 bits (75), Expect = 0.12
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*---YSIVEPGYHTASPSYTMPTP 398
            Y    P+++   P Y+     Y   +P Y    P    YS   PGY   SP+Y++ +P
Sbjct: 1902 YTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSP 1959



 Score = 32.7 bits (73), Expect = 0.21
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 294  GYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            GY   +P Y    P YS   P Y   SP+Y+  +P Y
Sbjct: 1607 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSY 1643



 Score = 32.0 bits (71), Expect = 0.36
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASP---SYTMPTPGY 404
            Y+   P ++   P Y      Y   +P Y    P YS   P Y   SP   +Y+  +PGY
Sbjct: 1888 YSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGY 1947



 Score = 31.2 bits (69), Expect = 0.61
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P ++   P Y+     Y   +P Y    P Y+   P Y   SP Y+  +P Y
Sbjct: 1823 PSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKY 1874
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>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P+++   P+Y+     Y   TP+Y    P YS   P Y   SP Y+  +P Y
Sbjct: 1860 YSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTY 1916



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+YT  +P Y
Sbjct: 1727 YSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNY 1783



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+YT  +P Y
Sbjct: 1706 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSY 1762



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1629 YSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1685



 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1622 YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1678



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P +    P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1748 YSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSY 1804



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1692 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 1748



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1685 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1741



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1678 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1734



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1671 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1727



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1664 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1720



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1657 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1713



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1650 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1706



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1643 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1699



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1636 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1692



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1615 YSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1671



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1713 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSY 1769



 Score = 38.5 bits (88), Expect = 0.004
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1613 PSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1664



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y      Y   +P Y    P YS   P Y  +SP YT  +P Y
Sbjct: 1762 YSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTY 1818



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y      Y   +P Y    P Y+   P Y   SPSY+  +P Y
Sbjct: 1741 YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSY 1797



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P Y+   P Y   SPSY+  +P Y
Sbjct: 1720 YSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNY 1776



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P++    P Y+     Y   +P+Y    P YS   P Y   SP+Y+  TP Y
Sbjct: 1832 YSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKY 1888



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y    P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1755 YTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 1811



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y
Sbjct: 1699 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNY 1755



 Score = 37.4 bits (85), Expect = 0.009
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y    P+++   P+Y+     Y   +P Y    P YS   P Y   SP YT  +P Y
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKY 1909



 Score = 37.4 bits (85), Expect = 0.009
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P +    P Y+     Y   +P Y    P YS   P Y   SP+YT  +P Y
Sbjct: 1769 YSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSY 1825



 Score = 37.4 bits (85), Expect = 0.009
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y
Sbjct: 1734 YSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSY 1790



 Score = 37.0 bits (84), Expect = 0.011
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +PRY    P Y+   P Y  +SPSY+  +P Y
Sbjct: 1783 YSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 1839



 Score = 36.2 bits (82), Expect = 0.019
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P+++   P Y+     Y   +P Y    P Y+   P Y   SP+Y+  +P Y
Sbjct: 1867 YSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKY 1923



 Score = 36.2 bits (82), Expect = 0.019
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P +    P+Y+     Y   +P+Y    P YS   P Y   SP+Y+  +P Y
Sbjct: 1851 PEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVY 1902



 Score = 35.8 bits (81), Expect = 0.025
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTP 398
            Y+   P+++   P Y+     Y   +P+Y    P YS   P Y   SP+Y+  +P
Sbjct: 1881 YSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSP 1935



 Score = 35.8 bits (81), Expect = 0.025
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            PR+    P Y      Y   +P Y    P Y+   P Y  +SP YT  +P Y
Sbjct: 1809 PRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKY 1860



 Score = 35.4 bits (80), Expect = 0.033
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y    P ++   P Y+     Y   +P Y    P Y+   P Y  +SPSY+  +P Y
Sbjct: 1776 YTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSY 1832



 Score = 35.0 bits (79), Expect = 0.042
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P ++   P+Y      Y   +P Y    P YS   P Y   SP Y+  +P Y
Sbjct: 1830 PSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTY 1881



 Score = 34.7 bits (78), Expect = 0.055
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P+Y+     Y   +P Y    P YS   P Y   SP Y+  +P Y
Sbjct: 1874 YSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTY 1930



 Score = 34.7 bits (78), Expect = 0.055
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   PRY      Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1797 YSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEY 1853



 Score = 34.3 bits (77), Expect = 0.072
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP YT  +P Y
Sbjct: 1790 YSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSY 1846



 Score = 33.9 bits (76), Expect = 0.095
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y    P ++   P Y      Y   +P+Y    P YS   P Y   +P Y+  +P Y
Sbjct: 1839 YTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTY 1895



 Score = 33.5 bits (75), Expect = 0.12
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*---YSIVEPGYHTASPSYTMPTP 398
            Y    P+++   P Y+     Y   +P Y    P    YS   PGY   SP+Y++ +P
Sbjct: 1902 YTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSP 1959



 Score = 32.7 bits (73), Expect = 0.21
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P +    P Y+     Y   +P+Y    P YS   P Y   SP Y+  +P Y
Sbjct: 1816 PTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKY 1867



 Score = 32.7 bits (73), Expect = 0.21
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 294  GYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            GY   +P Y    P YS   P Y   SP+Y+  +P Y
Sbjct: 1607 GYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSY 1643



 Score = 32.0 bits (71), Expect = 0.36
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASP---SYTMPTPGY 404
            Y+   P ++   P Y      Y   +P Y    P YS   P Y   SP   +Y+  +PGY
Sbjct: 1888 YSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGY 1947



 Score = 31.2 bits (69), Expect = 0.61
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P ++   P Y+     Y   +P Y    P Y+   P Y   SP Y+  +P Y
Sbjct: 1823 PSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKY 1874
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>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1745

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1657 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1713



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1650 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1706



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1643 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1699



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1636 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1692



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1629 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1685



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1622 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1678



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1615 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1671



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1608 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1664



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1601 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1657



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1594 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1650



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1587 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1643



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1580 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1636



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1573 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1629



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1566 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1622



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1559 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1615



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1552 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1608



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1664 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQY 1720



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1550 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1601



 Score = 37.0 bits (84), Expect = 0.011
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP Y+  +P Y
Sbjct: 1671 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPRSPSY 1727



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P  +   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1543 PGFSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1594



 Score = 33.1 bits (74), Expect = 0.16
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYT 386
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+
Sbjct: 1678 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPRSPSYS 1728



 Score = 32.0 bits (71), Expect = 0.36
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 300  DIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            D+ +P +    P YS   P Y   SPSY+  +P Y
Sbjct: 1539 DVSSPGFSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1573
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>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1853

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1616 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1672



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +3

Query: 243  VVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            V P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1612 VSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1665



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1623 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 1679



 Score = 37.7 bits (86), Expect = 0.007
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +PRY    P YS   P Y   SP+Y+  +P Y
Sbjct: 1651 YSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTY 1707



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y  +SP Y+  +P Y
Sbjct: 1630 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTY 1686



 Score = 36.2 bits (82), Expect = 0.019
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYD 407
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y+
Sbjct: 1658 YSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYE 1715



 Score = 35.4 bits (80), Expect = 0.033
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y
Sbjct: 1644 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTY 1700



 Score = 35.4 bits (80), Expect = 0.033
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SP+Y+  +P Y
Sbjct: 1637 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTY 1693



 Score = 35.0 bits (79), Expect = 0.042
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 270  PRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYD 407
            P+Y+     Y   +P Y    P YS   P Y  +SP+YT  +P Y+
Sbjct: 1722 PKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYN 1767



 Score = 34.7 bits (78), Expect = 0.055
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y     GY   +P+Y    P YS   P Y   SP Y+  +P Y
Sbjct: 1700 YSPTSPTYSPTSPSYE----GYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQY 1752



 Score = 34.7 bits (78), Expect = 0.055
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEP---GYHTASPSYTMPTPGY 404
            PR++   P Y+     Y   +P Y    P YS   P   GY  +SP Y+  +P Y
Sbjct: 1677 PRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTY 1731



 Score = 34.7 bits (78), Expect = 0.055
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVS---GYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            ++   P ++   P Y+       G   V+P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1585 FSMTSPHYSPTSPSYSPTSPAHHGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1644



 Score = 34.3 bits (77), Expect = 0.072
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTP 398
            Y+   P ++   PRY+     Y   +P Y    P YS   P Y   SPSY   +P
Sbjct: 1665 YSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSP 1719



 Score = 34.3 bits (77), Expect = 0.072
 Identities = 19/57 (33%), Positives = 24/57 (42%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P H+   P    V   Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1599 YSPTSPAHHGQSP----VSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1651



 Score = 33.5 bits (75), Expect = 0.12
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTP 398
            P+++   P Y+     Y   +P+Y    P YS   P Y  +SP+Y   +P
Sbjct: 1722 PKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSP 1771



 Score = 32.3 bits (72), Expect = 0.28
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYD 407
            P+++   P Y    +     + +Y    P YS   P Y  ASPSY+  +P YD
Sbjct: 1798 PQYSPTSPTYTPSPADQPGTSNQYSPSSPTYSPSSPTYSPASPSYSPSSPTYD 1850



 Score = 31.2 bits (69), Expect = 0.61
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P +    P YN   S     +P+Y    P YS   P Y  +SP Y+  +P Y
Sbjct: 1757 PTYTPSSPTYN-PTSPRAFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTY 1807



 Score = 30.4 bits (67), Expect = 1.0
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP---*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P    YS   P Y  +SP+Y+  +P Y
Sbjct: 1679 YSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSY 1738



 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 13/70 (18%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYD-------------MVHP*YSIVEPGYHTAS 374
            Y+   P ++   P+Y+     Y   +P Y                 P YS   P Y   S
Sbjct: 1731 YSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPRAFSSPQYSPTSPTYSPTS 1790

Query: 375  PSYTMPTPGY 404
            PSYT  +P Y
Sbjct: 1791 PSYTPSSPQY 1800



 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTP 398
            P +N   PR       Y   +P Y    P Y+   P Y   SP+YT P+P
Sbjct: 1764 PTYNPTSPRA-FSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYT-PSP 1811
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>RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1599

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1515 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1571



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1508 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1564



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1501 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1557



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1494 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1550



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1487 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1543



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1480 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1536



 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1473 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1529



 Score = 38.1 bits (87), Expect = 0.005
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P ++   P Y+     Y   +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1471 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1522



 Score = 34.7 bits (78), Expect = 0.055
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTM 389
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y   SPSY++
Sbjct: 1522 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSV 1573



 Score = 31.2 bits (69), Expect = 0.61
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 309  TPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            +P Y    P YS   P Y   SPSY+  +P Y
Sbjct: 1470 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1501



 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYT 386
            Y+   P ++   P Y+     Y   +P Y    P YS   P Y  +  S++
Sbjct: 1529 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSVSMSSFS 1579



 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +3

Query: 315  RYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            R     P YS   P Y   SPSY+  +P Y
Sbjct: 1465 RLSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1494
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>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1887

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGYD 407
            Y+   P +  V P Y+     Y   +P+Y    P YS     Y   SP+Y+ P+P YD
Sbjct: 1713 YSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYD 1769



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +3

Query: 270  PRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P Y+     Y   +P Y    P YS   P Y   SP+YT  TP Y
Sbjct: 1683 PSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSY 1727



 Score = 35.0 bits (79), Expect = 0.042
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 249  PRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            P ++   P Y+     Y   +P Y    P YS   P Y   +PSY+  +P Y
Sbjct: 1683 PSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNY 1734



 Score = 31.2 bits (69), Expect = 0.61
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYT 386
            Y+   P ++   P Y+     Y   +P Y    P Y+ V P Y   SP+Y+
Sbjct: 1685 YSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS 1735



 Score = 30.8 bits (68), Expect = 0.80
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 276  YNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            Y+   S Y   +P Y    P YS   P Y   SP Y+  +P Y
Sbjct: 1671 YSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSY 1713



 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 291  SGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTPGY 404
            + Y   +  Y    P YS   P Y  +SPSY+  +P Y
Sbjct: 1669 NAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCY 1706
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>FRE3_YEAST (Q08905) Ferric reductase transmembrane component 3 precursor (EC|
           1.16.1.7) (Ferric-chelate reductase 3)
          Length = 711

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +3

Query: 66  YYYNEHIYMRG--IGHIFCGTLCTLFIQHHLIIGLGH*TEYT 185
           YYY+ H +     IGH + G +C  F+   ++  + H   YT
Sbjct: 149 YYYSYHGFYANYDIGHTYGGIICAYFVGVMILASILHYLSYT 190
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>DNAA_STRRE (Q9ZH76) Chromosomal replication initiator protein dnaA|
          Length = 643

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/46 (30%), Positives = 16/46 (34%)
 Frame = +3

Query: 261 MVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTASPSYTMPTP 398
           M  P Y      YD     Y+   P Y    P Y +A P Y    P
Sbjct: 214 MDRPPYEQQRGDYDTPRAEYEPARPDYDSARPDYESARPEYDQRDP 259
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>HEM1_CLOTE (Q897K9) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)|
          Length = 399

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +3

Query: 9   NHNILQHIYFSF---EMYSTYTYYYNEHIYMRGIGHIFCG 119
           N NI+ HI+      E Y  YT++Y +   +  +  + CG
Sbjct: 59  NENIISHIFKCLNWDENYKKYTFHYKDDEAINHLMRVICG 98
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>IL3_SHEEP (Q06435) Interleukin-3 precursor (IL-3) (Multipotential|
           colony-stimulating factor) (Hematopoietic growth factor)
           (P-cell-stimulating factor) (Mast-cell growth factor)
           (MCGF)
          Length = 146

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +1

Query: 55  VHILIITTSIYICEA*GTSSVAPYVPYLSNIISSLASDTRQNIPSP 192
           +H+L++  S++  +A G     P  PY S+++  +  D ++  PSP
Sbjct: 7   LHLLLLLLSLHAPQAQGLPLRTPRTPY-SSLMEEIMDDLKKITPSP 51
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>RNFD_BUCAI (P57216) Electron transport complex protein rnfD|
          Length = 347

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 39  SFEMYSTYTYYYNEHIYMRGIGHIFCG--TLCTLFI 140
           S  M S  TY+Y++ ++M    H F G   +C  FI
Sbjct: 246 SLGMLSIITYFYSKELFMSPQVHFFSGGTMICAFFI 281
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>T2R40_PAPHA (Q646F2) Taste receptor type 2 member 40 (T2R40)|
          Length = 323

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 6   PNHNILQHIYFSFEMYSTYTYYYNEHIYMRGIGHIFCGTLCTLFIQHHLI 155
           P++N  +  YFS        ++YN  I++  I  I   TL  L ++ H +
Sbjct: 176 PSYNSTEKKYFSETNXVNLVFFYNIGIFIPLIMFILAATLLILSLKRHTL 225
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>P200_MYCGE (Q49429) Protein P200|
          Length = 1616

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 234  YNFVVPRHNMVHPRYNIVVSGYDIVTPRYDMVHP*YSIVEPGYHTAS 374
            Y+F  P ++   P Y+   S      P+YD+  P Y   EP Y   S
Sbjct: 1263 YDFDEPNYDFDQPSYD---SDLQPSEPQYDVDEPNYDFDEPNYEIES 1306



 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
 Frame = +3

Query: 297  YDIVTPRYDMVHP*YSI----VEPGYHTASPSYTMPTPGYD 407
            YD   P YD   P Y       EP Y    P+Y    P Y+
Sbjct: 1263 YDFDEPNYDFDQPSYDSDLQPSEPQYDVDEPNYDFDEPNYE 1303


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,821,627
Number of Sequences: 219361
Number of extensions: 1243942
Number of successful extensions: 3048
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2939
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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