ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYS_BUCAI (P57398) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--... 29 3.9
2ADA2B_BRARE (Q90WY5) Alpha-2B adrenergic receptor (Alpha-2B adre... 28 6.6
3DGKM_CAEEL (Q10024) Putative diacylglycerol kinase K06A1.6 (EC 2... 28 6.6
4ADA2C_CAVPO (Q60476) Alpha-2C adrenergic receptor (Alpha-2C adre... 28 6.6
5ADA2C_BRARE (Q90WY6) Alpha-2C adrenergic receptor (Alpha-2C adre... 28 6.6
6ADA2C_HUMAN (P18825) Alpha-2C adrenergic receptor (Alpha-2C adre... 28 8.6

>SYS_BUCAI (P57398) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 427

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +1

Query: 34  EFKTRNSRYNILKGPEPKNII*GKTSSKGIV*TGTLLQILEMDQHSNG 177
           +F+ R  +    K  E KN      +  G+    TL  ILE  QHSNG
Sbjct: 360 DFQARRIKARYRKKSEQKNFFVHTLNGSGLAIGRTLAAILENYQHSNG 407



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>ADA2B_BRARE (Q90WY5) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)|
           (Alpha-2B adrenoreceptor) (Alpha(2B)AR)
          Length = 510

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 184 LCYHYCVGPFPESEGAFLFRRFPWMMFCPR*CFSVLDPLIYCILNSSF 41
           +C   C  P P      LF+ F W+ +C     S L+P+IY I N  F
Sbjct: 456 VCPESCALPEP------LFKFFFWIGYCN----SCLNPVIYTIFNKDF 493



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>DGKM_CAEEL (Q10024) Putative diacylglycerol kinase K06A1.6 (EC 2.7.1.107)|
           (Diglyceride kinase) (DGK) (DAG kinase)
          Length = 937

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 71  RVQNRKTLSRAKHHPRESSKQERSF 145
           R+ NRK  SR   HPR+  K  R F
Sbjct: 379 RLANRKRSSRTPSHPRKHKKSHRQF 403



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>ADA2C_CAVPO (Q60476) Alpha-2C adrenergic receptor (Alpha-2C adrenoceptor)|
           (Alpha-2C adrenoreceptor)
          Length = 455

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 184 LCYHYCVGPFPESEGAFLFRRFPWMMFCPR*CFSVLDPLIYCILNSSF 41
           +C   C  P P      LF+ F W+ +C     S L+P+IY I N  F
Sbjct: 400 ICREACQLPTP------LFKFFFWIGYCN----SSLNPVIYTIFNQDF 437



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>ADA2C_BRARE (Q90WY6) Alpha-2C adrenergic receptor (Alpha-2C adrenoceptor)|
           (Alpha-2C adrenoreceptor) (Alpha(2C)AR)
          Length = 432

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 184 LCYHYCVGPFPESEGAFLFRRFPWMMFCPR*CFSVLDPLIYCILNSSF 41
           +C   C  P P      LF+ F W+ +C     S L+P+IY I N  F
Sbjct: 379 ICREPCAIPDP------LFKFFFWIGYCN----SSLNPVIYTIFNQDF 416



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>ADA2C_HUMAN (P18825) Alpha-2C adrenergic receptor (Alpha-2C adrenoceptor)|
           (Alpha-2C adrenoreceptor) (Alpha-2 adrenergic receptor
           subtype C4)
          Length = 462

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 184 LCYHYCVGPFPESEGAFLFRRFPWMMFCPR*CFSVLDPLIYCILNSSF 41
           +C   C  P P      LF+ F W+ +C     S L+P+IY + N  F
Sbjct: 407 ICREACQVPGP------LFKFFFWIGYCN----SSLNPVIYTVFNQDF 444


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,874,006
Number of Sequences: 219361
Number of extensions: 508292
Number of successful extensions: 1201
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 80,573,946
effective HSP length: 43
effective length of database: 71,141,423
effective search space used: 1707394152
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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