>RPOC1_MESVI (Q9MUS6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 668

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 10/46 (21%), Positives = 26/46 (56%)
 Frame = +1

Query: 46  C*YSNNQNVRIESSYKHFYS*MVELVTHFDLHTVHTHCIIAVQLFG 183
           C Y   +++R+  +  H++S + +++  +D   ++ H I+ V+  G
Sbjct: 555 CYYLTTEDIRLRGTKSHYFSSLEQVIMAYDQKKINLHTIVWVRFSG 600

>RPOC1_CYACA (O19897) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 633

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +1

Query: 46  C*YSNNQNVRIESSYKHFYS*MVELVTHFDLHTVHTHCIIAVQLFGRSNNHDV 204
           C Y  N N+  +    H++S   + +  +    +  H  I V+ +G  NN D+
Sbjct: 518 CYYLTNNNLANQKGSGHYFSSFEDAIIAYKQKLISLHAFIWVKFYGTINNLDI 570

>LCBA_NEIMB (Q51151) Capsular polysaccharide phosphotransferase (EC 2.7.-.-)|
           (Stealth protein)
          Length = 373

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = +1

Query: 4   IKYKDSFILLK*DIC*YSNNQNVRIESSYKHFYS*MVELVTHFDLHTVHTHCIIAVQLFG 183
           + Y D +   K +IC Y N ++   ++ YK        L     LH  H+ CI       
Sbjct: 298 LMYLDGYATPKREICYYFNIRSSHAQTQYKKL------LFEKEHLHMPHSFCIND----S 347

Query: 184 RSNNHDVSYDMH 219
            SNN D +Y +H
Sbjct: 348 SSNNADKNYALH 359

>WDR7_RAT (Q9ERH3) WD-repeat protein 7 (TGF-beta resistance-associated|
           protein TRAG)
          Length = 1488

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 206 ETSWLLLLPNNCTAIMQ-CVCTVCRSKWVTSSTI*E*KCL 90
           E + LL+ P NC+A +Q CVC+V     V   ++ E KC+
Sbjct: 514 EITQLLVPPENCSARVQHCVCSVASDHSVGLLSLREKKCI 553

>DSVA_DESGI (P94693) Sulfite reductase, dissimilatory-type alpha subunit (EC|
           1.8.99.3) (Desulfoviridin alpha subunit)
           (Hydrogensulfite reductase alpha subunit) (Fragment)
          Length = 198

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 221 GCMS*ETSWLLLLPNNCTAIMQCVCTVCRS 132
           GCM+ E+  L +   NCT  M C+ T+ R+
Sbjct: 48  GCMTYESGTLSIDNKNCTRCMHCINTMPRA 77

>RAD5_SCHPO (P36607) DNA repair protein rad5 (EC 3.6.1.-)|
          Length = 1133

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 15/51 (29%), Positives = 19/51 (37%)
 Frame = -3

Query: 238  CVHGCMDACRKKRHGYYSYQTIALQLCSVCVQYVGRSG*LVRPFRNKNVYK 86
            C H C   C  +   Y   + I   LC  C Q          PF  ++VYK
Sbjct: 893  CKHACCGDCLSEHIQYQKRRNIIPPLCHTCRQ----------PFNEQDVYK 933

>CCMO_SYNP7 (P46205) Hypothetical protein ccmO precursor|
          Length = 276

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 268 VGLIDTTGIPCVHGCMDACRKKRH-GYYSYQTIALQLCSVCVQ 143
           +GLI+T G P + G  DA  K  +     Y+     LC+  VQ
Sbjct: 121 IGLIETNGFPALVGAADAMLKSANVKLICYEKTGSGLCTAIVQ 163

>CCMO_SYNP6 (P23656) Hypothetical protein ccmO precursor|
          Length = 276

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 268 VGLIDTTGIPCVHGCMDACRKKRH-GYYSYQTIALQLCSVCVQ 143
           +GLI+T G P + G  DA  K  +     Y+     LC+  VQ
Sbjct: 121 IGLIETNGFPALVGAADAMLKSANVKLICYEKTGSGLCTAIVQ 163

>SO1C1_HUMAN (Q9NYB5) Solute carrier organic anion transporter family member 1C1|
           (Solute carrier family 21 member 14) (Organic anion
           transporter F) (OATP-F) (Organic anion-transporting
           polypeptide 14) (Organic anion transporter
           polypeptide-related protein
          Length = 712

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 53  TPTTKMLELRVLINIFIPKWSN*LPTSTYILYTHTA*LQCNCLVGVIT 196
           TP  +  ++  +   F+P   N      Y LY  T+ +Q N L G++T
Sbjct: 327 TPQGENAKIMEMARDFLPSLKNLFGNPVYFLYLCTSTVQFNSLFGMVT 374


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,972,526
Number of Sequences: 219361
Number of extensions: 787506
Number of successful extensions: 1595
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1595
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)