ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart53a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL445932.12| Human DNA sequence from clone RP11-533L1 on chr... 40 4.7
2emb|CT033797.5| Mouse DNA sequence from clone RP23-451J17 on chr... 40 4.7
3emb|BX000479.11| Mouse DNA sequence from clone RP23-139I16 on ch... 40 4.7
4emb|AL805921.7| Mouse DNA sequence from clone RP23-293N9 on chro... 40 4.7

>emb|AL445932.12| Human DNA sequence from clone RP11-533L1 on chromosome 6 Contains the
             5' end of a novel gene, complete sequence
          Length = 163650

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 143   ctattttaacattaatttagcagt 166
             ||||||||||||||||| ||||||
Sbjct: 16208 ctattttaacattaattcagcagt 16185



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>emb|CT033797.5| Mouse DNA sequence from clone RP23-451J17 on chromosome 17, complete
             sequence
          Length = 177126

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 314   tcaggctggcctccatcgcttggg 337
             ||||||||||||||| ||||||||
Sbjct: 90162 tcaggctggcctccaacgcttggg 90139



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>emb|BX000479.11| Mouse DNA sequence from clone RP23-139I16 on chromosome X, complete
            sequence
          Length = 145084

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 71   gatacaaacaagaggaacat 90
            ||||||||||||||||||||
Sbjct: 5690 gatacaaacaagaggaacat 5709



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>emb|AL805921.7| Mouse DNA sequence from clone RP23-293N9 on chromosome 4, complete
              sequence
          Length = 162090

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    attttaacattaatttagca 164
              ||||||||||||||||||||
Sbjct: 138324 attttaacattaatttagca 138305


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,320,122
Number of Sequences: 3902068
Number of extensions: 2320122
Number of successful extensions: 43735
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43725
Number of HSP's gapped (non-prelim): 10
length of query: 354
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 332
effective length of database: 17,147,199,772
effective search space: 5692870324304
effective search space used: 5692870324304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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