>dbj|AP003782.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-589G12, complete
              sequence
          Length = 180303

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 10     taataatacatatattaacata 31
              ||||||||||||||||||||||
Sbjct: 102375 taataatacatatattaacata 102396

>gb|AC166798.3| Mus musculus chromosome 3, clone RP23-442J19, complete sequence
          Length = 216754

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 11    aataatacatatattaacata 31
             |||||||||||||||||||||
Sbjct: 92672 aataatacatatattaacata 92652

>gb|AC164423.2| Mus musculus chromosome 3, clone RP24-361M10, complete sequence
          Length = 151556

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 11    aataatacatatattaacata 31
             |||||||||||||||||||||
Sbjct: 70380 aataatacatatattaacata 70360

>gb|U97190.1| Caenorhabditis elegans cosmid B0025, complete sequence
          Length = 17370

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 89    gttacacatattttcatcatt 109
             |||||||||||||||||||||
Sbjct: 14525 gttacacatattttcatcatt 14505

>gb|AC157916.2| Mus musculus chromosome 19, clone RP24-330P23, complete sequence
          Length = 190666

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 104    atcattctactatcccttccc 124
              |||||||||||||||||||||
Sbjct: 177020 atcattctactatcccttccc 177000

>gb|AC137148.14| Mus musculus chromosome 19, clone RP24-210C4, complete sequence
          Length = 168235

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 104    atcattctactatcccttccc 124
              |||||||||||||||||||||
Sbjct: 127619 atcattctactatcccttccc 127639

>emb|CR847828.13| Zebrafish DNA sequence from clone DKEY-36I7 in linkage group 15,
            complete sequence
          Length = 107420

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 27   acatagataaaatagtataaataaa 51
            ||||||||| |||||||||||||||
Sbjct: 4565 acatagatacaatagtataaataaa 4541

>emb|AL844900.3| Mouse DNA sequence from clone RP23-301L16 on chromosome X, complete
             sequence
          Length = 183256

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 128   aacatacacctttgactcctc 148
             |||||||||||||||||||||
Sbjct: 75695 aacatacacctttgactcctc 75675

>emb|BX004827.18| Human DNA sequence from clone RP13-391G2 on chromosome X Contains the
             SHOX gene for short stature homeobox and seven CpG
             islands, complete sequence
          Length = 119555

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                             
Query: 19    atatattaacatagataaaata-gtataaata 49
             ||||||||||||| |||||||| |||||||||
Sbjct: 86469 atatattaacatatataaaatatgtataaata 86500

>emb|AL953889.9| Human DNA sequence from clone RP11-7G23 on chromosome 9 Contains six
             novel pseudogenes, the FAM27A gene for  family with
             sequence similarity 27, member A, a novel gene and five
             CpG islands, complete sequence
          Length = 160730

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                 
Query: 10    taataatacatatattaacatagataaaatagtata 45
             |||||||||||||| ||||||| |||||||| ||||
Sbjct: 24650 taataatacatata-taacatatataaaatactata 24616

>emb|AL627230.15| Human DNA sequence from clone RP11-12A20 on chromosome 9 Contains six
             novel pseudogenes, the FAM27B gene for family with
             sequence similarity 27, member B, a pseudogene similar to
             part of ribosomal protein L10 (RPL10) and four CpG
             islands, complete sequence
          Length = 194246

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                 
Query: 10    taataatacatatattaacatagataaaatagtata 45
             |||||||||||||| ||||||| |||||||| ||||
Sbjct: 39735 taataatacatata-taacatatataaaatactata 39701

>emb|AL391987.15| Human DNA sequence from clone RP11-374M1 on chromosome 9 Contains the
              FAM27C gene for family with sequence similarity 27, member
              C, three novel genes, five novel pseudogenes and six CpG
              islands, complete sequence
          Length = 202081

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                  
Query: 10     taataatacatatattaacatagataaaatagtata 45
              |||||||||||||| ||||||| |||||||| ||||
Sbjct: 104261 taataatacatata-taacatatataaaatactata 104227

>emb|AL845351.6| Zebrafish DNA sequence from clone DKEYP-44A9 in linkage group 20,
              complete sequence
          Length = 160701

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     atgaaaagttacacatattt 101
              ||||||||||||||||||||
Sbjct: 152801 atgaaaagttacacatattt 152782

>emb|BX571727.8| Zebrafish DNA sequence from clone DKEY-14I22 in linkage group 5,
             complete sequence
          Length = 102670

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    atagataaaatagtataaat 48
             ||||||||||||||||||||
Sbjct: 87396 atagataaaatagtataaat 87415

>gb|AC025465.5| Homo sapiens chromosome 5 clone CTD-2308B18, complete sequence
          Length = 142148

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     actaataatacatatattaa 27
             ||||||||||||||||||||
Sbjct: 16307 actaataatacatatattaa 16326

>gb|AC105766.2| Homo sapiens chromosome 1 clone RP4-573J3, complete sequence
          Length = 91768

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    atacatatattaacatagat 34
             ||||||||||||||||||||
Sbjct: 23134 atacatatattaacatagat 23115

>gb|AC156803.2| Mus musculus BAC clone RP23-6E6 from chromosome 13, complete sequence
          Length = 226345

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     cagactaataatacatatat 24
             ||||||||||||||||||||
Sbjct: 11568 cagactaataatacatatat 11587

>gb|AC157654.2| Mus musculus BAC clone RP24-286J10 from chromosome 13, complete sequence
          Length = 152221

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      cagactaataatacatatat 24
              ||||||||||||||||||||
Sbjct: 109555 cagactaataatacatatat 109574

>gb|AC109129.3| Homo sapiens 3 BAC RP11-784B9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 181158

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    attaacatagataaaatagt 42
             ||||||||||||||||||||
Sbjct: 54650 attaacatagataaaatagt 54669

>emb|BX005081.6| Zebrafish DNA sequence from clone CH211-69M16 in linkage group 7,
             complete sequence
          Length = 168607

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    taaaatagtataaataaacc 53
             ||||||||||||||||||||
Sbjct: 83966 taaaatagtataaataaacc 83947

>gb|AC137068.4| Mus musculus BAC clone RP23-283C17 from 3, complete sequence
          Length = 176440

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    ttccaaaatgtgtgtcatct 194
              ||||||||||||||||||||
Sbjct: 148410 ttccaaaatgtgtgtcatct 148391

>gb|AC141646.4| Mus musculus BAC clone RP23-84E4 from chromosome 9, complete sequence
          Length = 193235

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    ccaaaatgtgtgtcatcttc 196
              ||||||||||||||||||||
Sbjct: 165021 ccaaaatgtgtgtcatcttc 165002


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,642,181
Number of Sequences: 3902068
Number of extensions: 2642181
Number of successful extensions: 237641
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 237576
Number of HSP's gapped (non-prelim): 69
length of query: 208
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 186
effective length of database: 17,147,199,772
effective search space: 3189379157592
effective search space used: 3189379157592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)