ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart52h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_781309.1| PREDICTED: Strongylocentrotus purpuratus simila... 44 0.12
2gb|AC124830.8| Mus musculus chromosome 17, clone RP24-165B21, co... 40 1.9
3emb|AJ243961.1|OSA243961 Oryza sativa chromosome 4 BAC l1332 gen... 40 1.9
4gb|AC139214.12| Mus musculus chromosome 17, clone RP23-345D6, co... 40 1.9
5emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4,... 40 1.9
6emb|AL845158.5| Mouse DNA sequence from clone RP23-147E6 on chro... 40 1.9
7dbj|AK046990.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 40 1.9
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.9
9dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.9
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.9
11dbj|AP005740.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.9
12dbj|AP004461.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.9
13emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 1.9
14gb|AC005837.1|AC005837 Homo sapiens chromosome 17, clone hRPK.31... 40 1.9
15gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 1.9
16emb|AL731884.4|CNS08C8O Oryza sativa chromosome 12, . BAC OSJNBa... 40 1.9
17emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa... 40 1.9
18emb|AL845318.8| Mouse DNA sequence from clone RP23-326F22 on chr... 40 1.9
19gb|AC107704.8| Mus musculus chromosome 7, clone RP24-121L4, comp... 38 7.4
20gb|AC154707.2| Mus musculus BAC clone RP24-353D1 from chromosome... 38 7.4
21gb|AC119854.7| Mus musculus chromosome 3, clone RP23-234F9, comp... 38 7.4
22gb|AF359996.1| Penaeus (Litopenaeus) vannamei microsatellite TUM... 38 7.4
23gb|AC121301.8| Mus musculus chromosome 7, clone RP23-432H1, comp... 38 7.4
24gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 7.4
25gb|AC132427.4| Mus musculus BAC clone RP23-326N11 from chromosom... 38 7.4
26gb|AC123948.4| Mus musculus BAC clone RP23-105C3 from chromosome... 38 7.4
27emb|Z83119.1|CER05H10 Caenorhabditis elegans Cosmid R05H10, comp... 38 7.4
28gb|AC101490.8| Mus musculus chromosome 3, clone RP23-188O2, comp... 38 7.4
29gb|AC118595.6| Mus musculus chromosome 3, clone RP24-481I21, com... 38 7.4
30gb|AC093141.2| Felis catus clone RP86-512F4, complete sequence 38 7.4
31emb|AL355522.11| Human DNA sequence from clone RP11-546O15 on ch... 38 7.4
32emb|AL354668.13| Human DNA sequence from clone RP11-506P24 on ch... 38 7.4
33gb|AC131956.1| Homo sapiens BAC clone RP11-793B23 from 4, comple... 38 7.4
34emb|BX000980.13| Zebrafish DNA sequence from clone CH211-136D9, ... 38 7.4
35emb|AL672084.10| Mouse DNA sequence from clone RP23-223D13 on ch... 38 7.4
36emb|AL590626.9| Mouse DNA sequence from clone RP23-143O13 on chr... 38 7.4
37gb|AC162903.3| Mus musculus BAC clone RP24-68D13 from chromosome... 38 7.4
38gb|AC023916.10| Homo sapiens chromosome , clone RP11-12L20, comp... 38 7.4
39gb|AC026347.17| Homo sapiens 3 BAC RP11-362A9 (Roswell Park Canc... 38 7.4
40gb|AC069242.13| Homo sapiens 3 BAC RP11-554J1 (Roswell Park Canc... 38 7.4
41gb|AC093014.11| Homo sapiens 12 BAC RP11-734E19 (Roswell Park Ca... 38 7.4
42gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 map TE... 38 7.4
43gb|AC097526.3| Homo sapiens BAC clone RP11-627H22 from 4, comple... 38 7.4
44gb|AC097501.3| Homo sapiens BAC clone RP11-340A13 from 4, comple... 38 7.4
45gb|AC069356.6| Homo sapiens chromosome 18, clone RP11-575O17, co... 38 7.4
46dbj|AK171615.1| Mus musculus B6-derived CD11 +ve dendritic cells... 38 7.4
47gb|AC137634.3| Oryza sativa (japonica cultivar-group) chromosome... 38 7.4
48gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare str... 38 7.4
49dbj|AK032859.1| Mus musculus 12 days embryo male wolffian duct i... 38 7.4
50ref|NM_064674.2| Caenorhabditis elegans CaDHerin family member (... 38 7.4
51dbj|AK053520.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 38 7.4
52dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.4
53dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.4
54gb|AC110771.3| Homo sapiens BAC clone RP11-173M11 from 4, comple... 38 7.4
55gb|AC153151.4| Mus musculus BAC clone RP23-82K6 from chromosome ... 38 7.4
56gb|AC021849.5| Homo sapiens BAC clone RP11-366G5 from 2, complet... 38 7.4
57gb|AC008548.6| Homo sapiens chromosome 5 clone CTC-505D13, compl... 38 7.4
58gb|AC140397.2| Mus musculus BAC clone RP23-162E7 from chromosome... 38 7.4
59dbj|AP003338.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.4
60dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.4
61emb|BX678774.7| Mouse DNA sequence from clone RP23-193A4 on chro... 38 7.4
62gb|AC005411.1|AC005411 Homo sapiens chromosome 17, clone hRPK.72... 38 7.4
63emb|BX247907.8| Zebrafish DNA sequence from clone CH211-232D19 i... 38 7.4
64gb|AC157803.6| Mus musculus chromosome 1, clone RP24-302H15, com... 38 7.4
65gb|AC102401.11| Mus musculus chromosome 1, clone RP24-257D18, co... 38 7.4
66gb|BC085915.1| Rattus norvegicus similar to RIKEN cDNA 4931406C0... 38 7.4
67ref|NM_001014206.1| Rattus norvegicus similar to RIKEN cDNA 4931... 38 7.4
68emb|AL954857.10| Zebrafish DNA sequence from clone DKEY-216D12 i... 38 7.4
69emb|CT030661.6| Mouse DNA sequence from clone RP23-290I6 on chro... 38 7.4
70emb|AL844185.9| Zebrafish DNA sequence from clone DKEY-30H22, co... 38 7.4 
>ref|XM_781309.1| PREDICTED: Strongylocentrotus purpuratus similar to 5-3
            exoribonuclease 2 (101.3 kD) (2O455) (LOC581300), partial
            mRNA
          Length = 2015

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 65   aagagaagaaaagaaacagcaa 86
            ||||||||||||||||||||||
Sbjct: 1820 aagagaagaaaagaaacagcaa 1841
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>gb|AC124830.8| Mus musculus chromosome 17, clone RP24-165B21, complete sequence
          Length = 176889

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    atcaccctctctgaatccaa 66
             ||||||||||||||||||||
Sbjct: 94478 atcaccctctctgaatccaa 94497
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>emb|AJ243961.1|OSA243961 Oryza sativa chromosome 4 BAC l1332 genomic sequences
          Length = 74658

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 57    ctgaatccaagagaagaaaagaaa 80
             ||||||||||||||||||| ||||
Sbjct: 49013 ctgaatccaagagaagaaaggaaa 48990
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>gb|AC139214.12| Mus musculus chromosome 17, clone RP23-345D6, complete sequence
          Length = 286283

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     atcaccctctctgaatccaa 66
              ||||||||||||||||||||
Sbjct: 280020 atcaccctctctgaatccaa 280001
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>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23,
             complete sequence
          Length = 164805

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 57    ctgaatccaagagaagaaaagaaa 80
             ||||||||||||||||||| ||||
Sbjct: 69786 ctgaatccaagagaagaaaggaaa 69809
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>emb|AL845158.5| Mouse DNA sequence from clone RP23-147E6 on chromosome 4 Contains a
              component of oligomeric golgi complex 1 (Cog5) pseudogene
              and part of the Ptprd gene for receptor type protein
              tyrosine phosphatase D, complete sequence
          Length = 198523

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     aatccaagagaagaaaagaa 79
              ||||||||||||||||||||
Sbjct: 101039 aatccaagagaagaaaagaa 101020
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>dbj|AK046990.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:B930009L08
            product:unclassifiable, full insert sequence
          Length = 2946

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 47   atcaccctctctgaatccaa 66
            ||||||||||||||||||||
Sbjct: 1507 atcaccctctctgaatccaa 1488
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 57       ctgaatccaagagaagaaaagaaa 80
                ||||||||||||||||||| ||||
Sbjct: 31492103 ctgaatccaagagaagaaaggaaa 31492126
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 61       atccaagagaagaaaagaaa 80
                ||||||||||||||||||||
Sbjct: 23931226 atccaagagaagaaaagaaa 23931245
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 67      gagaagaaaagaaacagcaa 86
               ||||||||||||||||||||
Sbjct: 2883268 gagaagaaaagaaacagcaa 2883287
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>dbj|AP005740.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0015A04
          Length = 152058

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     gagaagaaaagaaacagcaa 86
              ||||||||||||||||||||
Sbjct: 146417 gagaagaaaagaaacagcaa 146436
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>dbj|AP004461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0443G08
          Length = 162139

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    gagaagaaaagaaacagcaa 86
             ||||||||||||||||||||
Sbjct: 56330 gagaagaaaagaaacagcaa 56349
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>emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0313F03, complete
              sequence
          Length = 131195

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 57     ctgaatccaagagaagaaaagaaa 80
              ||||||||||||||||||| ||||
Sbjct: 110383 ctgaatccaagagaagaaaggaaa 110406
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>gb|AC005837.1|AC005837 Homo sapiens chromosome 17, clone hRPK.318_A_15, complete sequence
          Length = 163218

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 65     aagagaagaaaagaaacagc 84
              ||||||||||||||||||||
Sbjct: 142323 aagagaagaaaagaaacagc 142342
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 61       atccaagagaagaaaagaaa 80
                ||||||||||||||||||||
Sbjct: 23859432 atccaagagaagaaaagaaa 23859451
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>emb|AL731884.4|CNS08C8O Oryza sativa chromosome 12, . BAC OSJNBa0014A07 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 144767

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    atccaagagaagaaaagaaa 80
             ||||||||||||||||||||
Sbjct: 41957 atccaagagaagaaaagaaa 41938
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>emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 176388

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     atccaagagaagaaaagaaa 80
              ||||||||||||||||||||
Sbjct: 156170 atccaagagaagaaaagaaa 156151
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>emb|AL845318.8| Mouse DNA sequence from clone RP23-326F22 on chromosome 2, complete
              sequence
          Length = 202162

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 63     ccaagagaagaaaagaaaca 82
              ||||||||||||||||||||
Sbjct: 198216 ccaagagaagaaaagaaaca 198197
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>gb|AC107704.8| Mus musculus chromosome 7, clone RP24-121L4, complete sequence
          Length = 194458

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 57     ctgaatccaagagaagaaa 75
              |||||||||||||||||||
Sbjct: 183161 ctgaatccaagagaagaaa 183143
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>gb|AC154707.2| Mus musculus BAC clone RP24-353D1 from chromosome 17, complete sequence
          Length = 163460

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 70    aagaaaagaaacagcaagc 88
             |||||||||||||||||||
Sbjct: 36677 aagaaaagaaacagcaagc 36695
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>gb|AC119854.7| Mus musculus chromosome 3, clone RP23-234F9, complete sequence
          Length = 210547

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    gaacaagagacaaacatca 28
             |||||||||||||||||||
Sbjct: 22962 gaacaagagacaaacatca 22944
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>gb|AF359996.1| Penaeus (Litopenaeus) vannamei microsatellite TUMXLv10.343 sequence
          Length = 438

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 64  caagagaagaaaagaaacagcaa 86
           ||||| |||||||||||||||||
Sbjct: 412 caagaaaagaaaagaaacagcaa 390
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>gb|AC121301.8| Mus musculus chromosome 7, clone RP23-432H1, complete sequence
          Length = 205639

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 57    ctgaatccaagagaagaaa 75
             |||||||||||||||||||
Sbjct: 39721 ctgaatccaagagaagaaa 39703
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 59       gaatccaagagaagaaaag 77
                |||||||||||||||||||
Sbjct: 10174362 gaatccaagagaagaaaag 10174344
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>gb|AC132427.4| Mus musculus BAC clone RP23-326N11 from chromosome 18, complete sequence
          Length = 192806

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 65     aagagaagaaaagaaacag 83
              |||||||||||||||||||
Sbjct: 116500 aagagaagaaaagaaacag 116518
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>gb|AC123948.4| Mus musculus BAC clone RP23-105C3 from chromosome 10, complete sequence
          Length = 214819

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 110   tagttttccttgctagatt 128
             |||||||||||||||||||
Sbjct: 18285 tagttttccttgctagatt 18267
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>emb|Z83119.1|CER05H10 Caenorhabditis elegans Cosmid R05H10, complete sequence
          Length = 44237

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 17    agacaaacatcagccaatc 35
             |||||||||||||||||||
Sbjct: 22999 agacaaacatcagccaatc 23017
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>gb|AC101490.8| Mus musculus chromosome 3, clone RP23-188O2, complete sequence
          Length = 247848

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 10     gaacaagagacaaacatca 28
              |||||||||||||||||||
Sbjct: 172653 gaacaagagacaaacatca 172635
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>gb|AC118595.6| Mus musculus chromosome 3, clone RP24-481I21, complete sequence
          Length = 248188

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 65     aagagaagaaaagaaacag 83
              |||||||||||||||||||
Sbjct: 151956 aagagaagaaaagaaacag 151974
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>gb|AC093141.2| Felis catus clone RP86-512F4, complete sequence
          Length = 119353

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    caagagacaaacatcagcc 31
             |||||||||||||||||||
Sbjct: 42128 caagagacaaacatcagcc 42146
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>emb|AL355522.11| Human DNA sequence from clone RP11-546O15 on chromosome 6 Contains the
             3' end of the CLIC5 gene for chloride intracellular
             channel 5, complete sequence
          Length = 182982

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 76    agaaacagcaagctccctg 94
             |||||||||||||||||||
Sbjct: 22185 agaaacagcaagctccctg 22167
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>emb|AL354668.13| Human DNA sequence from clone RP11-506P24 on chromosome 13 Contains the
             SPRY2 gene for sprouty homolog 2 (Drosophila) and a CpG
             island, complete sequence
          Length = 191652

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 56    tctgaatccaagagaagaaaaga 78
             |||||| ||||||||||||||||
Sbjct: 41472 tctgaagccaagagaagaaaaga 41494
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>gb|AC131956.1| Homo sapiens BAC clone RP11-793B23 from 4, complete sequence
          Length = 195404

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 65   aagagaagaaaagaaacagcaag 87
            |||| ||||||||||||||||||
Sbjct: 4181 aagaaaagaaaagaaacagcaag 4159
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>emb|BX000980.13| Zebrafish DNA sequence from clone CH211-136D9, complete sequence
          Length = 169191

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 20    caaacatcagccaatcggt 38
             |||||||||||||||||||
Sbjct: 32832 caaacatcagccaatcggt 32850
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>emb|AL672084.10| Mouse DNA sequence from clone RP23-223D13 on chromosome 11 Contains the
             3' end of the Spred2 gene for sprouty protein with EVH-1
             domain 2, related sequence and a CpG island, complete
             sequence
          Length = 122090

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 41    tcactcatcaccctctctgaatc 63
             ||||||||| |||||||||||||
Sbjct: 52747 tcactcatcgccctctctgaatc 52769
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>emb|AL590626.9| Mouse DNA sequence from clone RP23-143O13 on chromosome 13 Contains the
             3' end of a novel gene and a CpG island, complete sequence
          Length = 179282

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 65    aagagaagaaaagaaacag 83
             |||||||||||||||||||
Sbjct: 96069 aagagaagaaaagaaacag 96051
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>gb|AC162903.3| Mus musculus BAC clone RP24-68D13 from chromosome 9, complete sequence
          Length = 198549

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 72    gaaaagaaacagcaagctc 90
             |||||||||||||||||||
Sbjct: 80431 gaaaagaaacagcaagctc 80449
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>gb|AC023916.10| Homo sapiens chromosome , clone RP11-12L20, complete sequence
          Length = 132446

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 57    ctgaatccaagagaagaaa 75
             |||||||||||||||||||
Sbjct: 65835 ctgaatccaagagaagaaa 65817
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>gb|AC026347.17| Homo sapiens 3 BAC RP11-362A9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 195430

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 112    gttttccttgctagattga 130
              |||||||||||||||||||
Sbjct: 194883 gttttccttgctagattga 194901
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>gb|AC069242.13| Homo sapiens 3 BAC RP11-554J1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 184664

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 112   gttttccttgctagattga 130
             |||||||||||||||||||
Sbjct: 91633 gttttccttgctagattga 91615
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>gb|AC093014.11| Homo sapiens 12 BAC RP11-734E19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 97495

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 65    aagagaagaaaagaaacagcaag 87
             |||||||||||||||||| ||||
Sbjct: 81714 aagagaagaaaagaaacaacaag 81692
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>gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 map TEn5, complete
             sequence
          Length = 114144

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 4     agcacagaacaagagacaa 22
             |||||||||||||||||||
Sbjct: 35506 agcacagaacaagagacaa 35524
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>gb|AC097526.3| Homo sapiens BAC clone RP11-627H22 from 4, complete sequence
          Length = 144324

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 65    aagagaagaaaagaaacag 83
             |||||||||||||||||||
Sbjct: 25465 aagagaagaaaagaaacag 25447
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>gb|AC097501.3| Homo sapiens BAC clone RP11-340A13 from 4, complete sequence
          Length = 173099

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 6     cacagaacaagagacaaac 24
             |||||||||||||||||||
Sbjct: 93669 cacagaacaagagacaaac 93687
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>gb|AC069356.6| Homo sapiens chromosome 18, clone RP11-575O17, complete sequence
          Length = 161480

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 60    aatccaagagaagaaaaga 78
             |||||||||||||||||||
Sbjct: 63986 aatccaagagaagaaaaga 64004
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>dbj|AK171615.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F730319N20
           product:hypothetical protein, full insert sequence
          Length = 2063

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 41  tcactcatcaccctctctgaatc 63
           ||||||||| |||||||||||||
Sbjct: 339 tcactcatcgccctctctgaatc 361
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>gb|AC137634.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0078C05,
              complete sequence
          Length = 122116

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 59     gaatccaagagaagaaaag 77
              |||||||||||||||||||
Sbjct: 119963 gaatccaagagaagaaaag 119945
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>gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0045E22, from chromosome 3, complete sequence
          Length = 160920

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 59    gaatccaagagaagaaaag 77
             |||||||||||||||||||
Sbjct: 35775 gaatccaagagaagaaaag 35757
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>dbj|AK032859.1| Mus musculus 12 days embryo male wolffian duct includes surrounding
            region cDNA, RIKEN full-length enriched library,
            clone:6720463F07 product:unclassifiable, full insert
            sequence
          Length = 2913

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 41   tcactcatcaccctctctgaatc 63
            ||||||||| |||||||||||||
Sbjct: 1933 tcactcatcgccctctctgaatc 1955
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>ref|NM_064674.2| Caenorhabditis elegans CaDHerin family member (cdh-7) (cdh-7) mRNA,
            complete cds
          Length = 4254

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 17   agacaaacatcagccaatc 35
            |||||||||||||||||||
Sbjct: 3681 agacaaacatcagccaatc 3699
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>dbj|AK053520.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
           library, clone:E130104P22 product:unclassifiable, full
           insert sequence
          Length = 3604

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 65  aagagaagaaaagaaacag 83
           |||||||||||||||||||
Sbjct: 411 aagagaagaaaagaaacag 429
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 59       gaatccaagagaagaaaag 77
                |||||||||||||||||||
Sbjct: 10172463 gaatccaagagaagaaaag 10172445
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 65     aagagaagaaaagaaacag 83
              |||||||||||||||||||
Sbjct: 734846 aagagaagaaaagaaacag 734864
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>gb|AC110771.3| Homo sapiens BAC clone RP11-173M11 from 4, complete sequence
          Length = 167429

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 66    agagaagaaaagaaacagcaagc 88
             |||| ||||||||||||||||||
Sbjct: 67600 agaggagaaaagaaacagcaagc 67578
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>gb|AC153151.4| Mus musculus BAC clone RP23-82K6 from chromosome 13, complete sequence
          Length = 164635

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 62    tccaagagaagaaaagaaa 80
             |||||||||||||||||||
Sbjct: 55674 tccaagagaagaaaagaaa 55692
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>gb|AC021849.5| Homo sapiens BAC clone RP11-366G5 from 2, complete sequence
          Length = 168710

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 57    ctgaatccaagagaagaaa 75
             |||||||||||||||||||
Sbjct: 89510 ctgaatccaagagaagaaa 89492
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>gb|AC008548.6| Homo sapiens chromosome 5 clone CTC-505D13, complete sequence
          Length = 116730

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 7      acagaacaagagacaaaca 25
              |||||||||||||||||||
Sbjct: 111140 acagaacaagagacaaaca 111122
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>gb|AC140397.2| Mus musculus BAC clone RP23-162E7 from chromosome 13, complete sequence
          Length = 233829

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 62    tccaagagaagaaaagaaa 80
             |||||||||||||||||||
Sbjct: 31254 tccaagagaagaaaagaaa 31236
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>dbj|AP003338.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1212_B09
          Length = 130728

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 65    aagagaagaaaagaaacag 83
             |||||||||||||||||||
Sbjct: 12046 aagagaagaaaagaaacag 12064
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>dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBb0032H19
          Length = 126434

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 65     aagagaagaaaagaaacag 83
              |||||||||||||||||||
Sbjct: 118590 aagagaagaaaagaaacag 118608
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>emb|BX678774.7| Mouse DNA sequence from clone RP23-193A4 on chromosome 2, complete
             sequence
          Length = 123748

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 71    agaaaagaaacagcaagct 89
             |||||||||||||||||||
Sbjct: 54633 agaaaagaaacagcaagct 54615
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>gb|AC005411.1|AC005411 Homo sapiens chromosome 17, clone hRPK.721_K_1, complete sequence
          Length = 163908

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 14     aagagacaaacatcagcca 32
              |||||||||||||||||||
Sbjct: 114615 aagagacaaacatcagcca 114633
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>emb|BX247907.8| Zebrafish DNA sequence from clone CH211-232D19 in linkage group 8,
             complete sequence
          Length = 169530

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 60    aatccaagagaagaaaaga 78
             |||||||||||||||||||
Sbjct: 95044 aatccaagagaagaaaaga 95026
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>gb|AC157803.6| Mus musculus chromosome 1, clone RP24-302H15, complete sequence
          Length = 136168

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 7     acagaacaagagacaaacatcag 29
             |||||||||| ||||||||||||
Sbjct: 99879 acagaacaagtgacaaacatcag 99901
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>gb|AC102401.11| Mus musculus chromosome 1, clone RP24-257D18, complete sequence
          Length = 166242

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 7     acagaacaagagacaaacatcag 29
             |||||||||| ||||||||||||
Sbjct: 76295 acagaacaagtgacaaacatcag 76273
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>gb|BC085915.1| Rattus norvegicus similar to RIKEN cDNA 4931406C07, mRNA (cDNA clone
            MGC:94800 IMAGE:7107444), complete cds
          Length = 2502

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 64   caagagaagaaaagaaacagcaa 86
            ||||| |||||||||||||||||
Sbjct: 1684 caagataagaaaagaaacagcaa 1706
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>ref|NM_001014206.1| Rattus norvegicus similar to RIKEN cDNA 4931406C07 (RGD1309534), mRNA
          Length = 2502

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 64   caagagaagaaaagaaacagcaa 86
            ||||| |||||||||||||||||
Sbjct: 1684 caagataagaaaagaaacagcaa 1706
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>emb|AL954857.10| Zebrafish DNA sequence from clone DKEY-216D12 in linkage group 23,
             complete sequence
          Length = 65564

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 63    ccaagagaagaaaagaaac 81
             |||||||||||||||||||
Sbjct: 53376 ccaagagaagaaaagaaac 53394
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>emb|CT030661.6| Mouse DNA sequence from clone RP23-290I6 on chromosome 17, complete
              sequence
          Length = 185920

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 70     aagaaaagaaacagcaagc 88
              |||||||||||||||||||
Sbjct: 177748 aagaaaagaaacagcaagc 177766



 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 70     aagaaaagaaacagcaagc 88
              |||||||||||||||||||
Sbjct: 124223 aagaaaagaaacagcaagc 124241
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>emb|AL844185.9| Zebrafish DNA sequence from clone DKEY-30H22, complete sequence
          Length = 180872

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 60     aatccaagagaagaaaaga 78
              |||||||||||||||||||
Sbjct: 161832 aatccaagagaagaaaaga 161850


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,067,666
Number of Sequences: 3902068
Number of extensions: 2067666
Number of successful extensions: 171203
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 170614
Number of HSP's gapped (non-prelim): 589
length of query: 154
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 132
effective length of database: 17,147,199,772
effective search space: 2263430369904
effective search space used: 2263430369904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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