ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart52h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF491944.2| Homo sapiens decorin (DCN) gene, complete cds 36 4.2
2gb|AC009728.14| Homo sapiens 12 BAC RP11-864B16 (Roswell Park Ca... 36 4.2
3gb|AC103560.2| Homo sapiens chromosome 3 clone RP11-673E20, comp... 36 4.2
4gb|AC024102.19| Homo sapiens 3 BAC RP11-252O10 (Roswell Park Can... 36 4.2
5gb|AC078922.14| Homo sapiens 12q BAC RP11-611E13 (Roswell Park C... 36 4.2
6gb|AC007115.1|AC007115 Homo sapiens chromosome 12 clone 917O5, c... 36 4.2
7gb|AC005066.1|AC005066 Homo sapiens BAC clone CTB-118P15 from 8q... 36 4.2

>gb|AF491944.2| Homo sapiens decorin (DCN) gene, complete cds
          Length = 39638

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 16    aggaccaaggcagatatt 33
             ||||||||||||||||||
Sbjct: 18584 aggaccaaggcagatatt 18567



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>gb|AC009728.14| Homo sapiens 12 BAC RP11-864B16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 108793

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 16    aggaccaaggcagatatt 33
             ||||||||||||||||||
Sbjct: 32562 aggaccaaggcagatatt 32579



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>gb|AC103560.2| Homo sapiens chromosome 3 clone RP11-673E20, complete sequence
          Length = 186241

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 12     cataaggaccaaggcaga 29
              ||||||||||||||||||
Sbjct: 141202 cataaggaccaaggcaga 141219



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>gb|AC024102.19| Homo sapiens 3 BAC RP11-252O10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 148163

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 12    cataaggaccaaggcaga 29
             ||||||||||||||||||
Sbjct: 28850 cataaggaccaaggcaga 28867



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>gb|AC078922.14| Homo sapiens 12q BAC RP11-611E13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 181000

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 2      ccaaattaagcataagga 19
              ||||||||||||||||||
Sbjct: 153246 ccaaattaagcataagga 153263



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>gb|AC007115.1|AC007115 Homo sapiens chromosome 12 clone 917O5, complete sequence
          Length = 180821

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 16    aggaccaaggcagatatt 33
             ||||||||||||||||||
Sbjct: 30523 aggaccaaggcagatatt 30506



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>gb|AC005066.1|AC005066 Homo sapiens BAC clone CTB-118P15 from 8q21, complete sequence
          Length = 226916

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 17     ggaccaaggcagatatta 34
              ||||||||||||||||||
Sbjct: 164908 ggaccaaggcagatatta 164891


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 224,694
Number of Sequences: 3902068
Number of extensions: 224694
Number of successful extensions: 55364
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55353
Number of HSP's gapped (non-prelim): 11
length of query: 39
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 19
effective length of database: 17,155,003,908
effective search space: 325945074252
effective search space used: 325945074252
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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