ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart52h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CER1_HUMAN (O95813) Cerberus precursor (Cerberus-related protein) 32 0.39
2GAOX1_ORYSA (P93771) Gibberellin 20 oxidase 1 (EC 1.14.11.-) (Gi... 30 1.9
3MATK_DROLU (Q5J2U8) Maturase K (Intron maturase) 29 2.5
4ACCO_DENCR (Q9ZQZ1) 1-aminocyclopropane-1-carboxylate oxidase (E... 29 3.3
5ACCO1_ORYSA (Q40634) 1-aminocyclopropane-1-carboxylate oxidase 1... 29 3.3
6ACCO_PERAE (P19464) 1-aminocyclopropane-1-carboxylate oxidase (E... 29 3.3
7YR224_MIMIV (Q5UQB7) Putative BTB/POZ domain-containing protein ... 28 4.3
8ACCO_PRUMU (Q9MB94) 1-aminocyclopropane-1-carboxylate oxidase (E... 28 4.3
9GLGB_ORYSA (Q01401) 1,4-alpha-glucan branching enzyme, chloropla... 28 5.6
10ACCO1_LYCES (P05116) 1-aminocyclopropane-1-carboxylate oxidase 1... 28 5.6
11ACCO_ACTCH (P31237) 1-aminocyclopropane-1-carboxylate oxidase (E... 28 7.3
12ACCO1_PETHY (Q08506) 1-aminocyclopropane-1-carboxylate oxidase 1... 28 7.3
13ACCO1_ARATH (Q06588) 1-aminocyclopropane-1-carboxylate oxidase (... 27 9.5

>CER1_HUMAN (O95813) Cerberus precursor (Cerberus-related protein)|
          Length = 267

 Score = 32.0 bits (71), Expect = 0.39
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 348 FNPGSDAMVEPLEEMVSDERPARYDAYNWGHFFSTRK 238
           F PG+ ++++P++ M  ++ P R +A  + H F  RK
Sbjct: 105 FPPGTQSLIQPIDGMKMEKSPLREEAKKFWHHFMFRK 141



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>GAOX1_ORYSA (P93771) Gibberellin 20 oxidase 1 (EC 1.14.11.-) (Gibberellin C-20|
           oxidase 1) (GA 20-oxidase 1) (Os20ox)
          Length = 372

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 351 FFNPGSDAMVEPLEEMVSDERPARYDAYNW 262
           F  P  D +V P EE+V D  P  Y  + W
Sbjct: 306 FLCPEMDTVVRPPEELVDDHHPRVYPDFTW 335



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>MATK_DROLU (Q5J2U8) Maturase K (Intron maturase)|
          Length = 514

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 279 YDAYNWGHFFSTRKNSNFKK 220
           Y+++NW  FFS +KN +F K
Sbjct: 183 YESHNWNSFFSLKKNISFLK 202



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>ACCO_DENCR (Q9ZQZ1) 1-aminocyclopropane-1-carboxylate oxidase (EC 1.14.17.4)|
           (ACC oxidase) (Ethylene-forming enzyme) (EFE)
          Length = 318

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 351 FFNPGSDAMVEPLEEMVSDE 292
           F+NPGSDA++ P  E+V  E
Sbjct: 248 FYNPGSDAVIFPAPELVEKE 267



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>ACCO1_ORYSA (Q40634) 1-aminocyclopropane-1-carboxylate oxidase 1 (EC 1.14.17.4)|
           (ACC oxidase 1) (Ethylene-forming enzyme) (EFE)
          Length = 322

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 351 FFNPGSDAMVEPLEEMVSDE 292
           F+NPGSDA++ P   +V +E
Sbjct: 256 FYNPGSDAVISPAPALVKEE 275



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>ACCO_PERAE (P19464) 1-aminocyclopropane-1-carboxylate oxidase (EC 1.14.17.4)|
           (ACC oxidase) (Ethylene-forming enzyme) (EFE)
           (Ripening-related protein PAVOE3)
          Length = 320

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 351 FFNPGSDAMVEPLEEMVSDERPARYDAY 268
           F+NPGSDA++ P   +V  E   + + Y
Sbjct: 251 FYNPGSDAVIFPAPALVEKEAEEKKEVY 278



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>YR224_MIMIV (Q5UQB7) Putative BTB/POZ domain-containing protein R224|
          Length = 540

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 151 ESAKIHSKVELSEVCDLYVFDV 216
           E + IH+K+    VCD+YV+D+
Sbjct: 206 EFSSIHNKIIYHHVCDIYVYDL 227



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>ACCO_PRUMU (Q9MB94) 1-aminocyclopropane-1-carboxylate oxidase (EC 1.14.17.4)|
           (ACC oxidase) (Ethylene-forming enzyme) (EFE)
          Length = 319

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 351 FFNPGSDAMVEPLEEMVSDERPARYDAY 268
           F+NPGSDA++ P   +V  E   +   Y
Sbjct: 250 FYNPGSDAVIYPAPTLVEKEAEEKNQVY 277



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>GLGB_ORYSA (Q01401) 1,4-alpha-glucan branching enzyme, chloroplast precursor|
           (EC 2.4.1.18) (Starch branching enzyme) (Q-enzyme)
          Length = 820

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +2

Query: 5   LTNAVHILCSNARVHIGINTHKVGINTHNSYL*Y----YYKWWHACSSITEERRALRFI 169
           L + VH   SN  V  G+N + VG NTH SY       Y+K W +          LRF+
Sbjct: 333 LMDVVHSHASN-NVTDGLNGYDVGQNTHESYFHTGDRGYHKLWDSRLFNYANWEVLRFL 390



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>ACCO1_LYCES (P05116) 1-aminocyclopropane-1-carboxylate oxidase 1 (EC 1.14.17.4)|
           (ACC oxidase 1) (Ethylene-forming enzyme) (EFE) (Protein
           pTOM 13)
          Length = 315

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 351 FFNPGSDAMVEPLEEMVSDERPARYDAY 268
           F+NPGSDA++ P + +V  E       Y
Sbjct: 250 FYNPGSDAVIYPAKTLVEKEAEESTQVY 277



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>ACCO_ACTCH (P31237) 1-aminocyclopropane-1-carboxylate oxidase (EC 1.14.17.4)|
           (ACC oxidase) (Ethylene-forming enzyme) (EFE)
          Length = 319

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 351 FFNPGSDAMVEPLEEMVSDERPARYDAY 268
           F+NPGSDA++ P   +V  E   +   Y
Sbjct: 250 FYNPGSDAVMYPAPALVDKEEDQQKQVY 277



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>ACCO1_PETHY (Q08506) 1-aminocyclopropane-1-carboxylate oxidase 1 (EC 1.14.17.4)|
           (ACC oxidase 1) (Ethylene-forming enzyme) (EFE)
          Length = 319

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 351 FFNPGSDAMVEPLEEMVSDERPARYDAY 268
           F+NPGSDA++ P   +V  E       Y
Sbjct: 250 FYNPGSDAVIYPAPALVEKEAEENKQVY 277



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>ACCO1_ARATH (Q06588) 1-aminocyclopropane-1-carboxylate oxidase (EC 1.14.17.4)|
           (ACC oxidase) (Ethylene-forming enzyme) (EFE)
          Length = 323

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 351 FFNPGSDAMVEPLEEMVSDE 292
           F+NPGSD+++ P  E++  E
Sbjct: 251 FYNPGSDSVIFPAPELIGKE 270


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,459,365
Number of Sequences: 219361
Number of extensions: 588173
Number of successful extensions: 1483
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1483
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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