ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart52g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin ... 529 e-147
2gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, co... 42 0.95
3emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on ch... 42 0.95
4emb|BX004993.16| Zebrafish DNA sequence from clone CH211-163C2 i... 42 0.95
5emb|BX323881.7| Zebrafish DNA sequence from clone CH211-274G13 i... 42 0.95
6gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 42 0.95
7emb|CT025527.7| Mouse DNA sequence from clone RP23-279J20 on chr... 40 3.7
8emb|Z82265.1|CEF02H6 Caenorhabditis elegans Cosmid F02H6, comple... 40 3.7
9tpg|BK003523.1| TPA: TPA_inf: Drosophila melanogaster HDC02994 (... 40 3.7
10gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complet... 40 3.7
11gb|AC160646.2| Gallus gallus BAC clone CH261-24P2 from chromosom... 40 3.7
12gb|AC009202.7| Drosophila melanogaster, chromosome 2L, region 36... 40 3.7
13gb|AC115004.14| Mus musculus chromosome 3, clone RP24-182K13, co... 40 3.7
14gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, r... 40 3.7
15gb|AE003656.2| Drosophila melanogaster chromosome 2L, section 65... 40 3.7
16emb|AL732627.14| Mouse DNA sequence from clone RP23-183L6 on chr... 40 3.7
17gb|AC164108.2| Mus musculus BAC clone RP24-96K15 from chromosome... 40 3.7

>dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin isoform, complete cds
          Length = 1343

 Score =  529 bits (267), Expect = e-147
 Identities = 283/287 (98%), Gaps = 1/287 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    accgtacgtacacattgcatttcaaatttcccccc-aagttacctggatgcgtacatgac 59
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1219 accgtacgtacacattgcatttcaaatttcccccccaagttacctggatgcgtacatgac 1160

                                                                        
Query: 60   atgacagtacatcatcctcatcattcataaacattacatggaagcaaacactgactgacg 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1159 atgacagtacatcatcctcatcattcataaacattacatggaagcaaacactgactgacg 1100

                                                                        
Query: 120  aagacacactcgatcggtagagaaaacaagcagcaagcgcgggcggcgagccgaggaaag 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1099 aagacacactcgatcggtagagaaaacaagcagcaagcgcgggcggcgagcagaggaaag 1040

                                                                        
Query: 180  cagaggcgcgcgcaaagaccagcagaatccagggaccccaacggaggcccctctgtcctc 239
            ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1039 cagagacgcgcgcaaagaccagcagaatccagggacccgaacggaggcccctctgtcctc 980

                                                           
Query: 240  tgccatatctacagttcatacgcctccgaccatctagcggctgccga 286
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979  tgccatatctacagttcatacgcctccgaccatctagcggctgccga 933



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>gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, complete sequence
          Length = 218656

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 90     acattacatggaagcaaacac 110
              |||||||||||||||||||||
Sbjct: 152543 acattacatggaagcaaacac 152563



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>emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on chromosome 9p11.2-21
             Contains the 3' end of the gene for a novel protein
             similar to sorting nexin 7 (SNX7), the TSCOT gene for
             thymic stromal co-transporter, a pseudogene similar to Mus
             musculus major urinary proteins and a CpG island, complete
             sequence
          Length = 141659

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 234   gtcctctgccatatctacagt 254
             |||||||||||||||||||||
Sbjct: 70594 gtcctctgccatatctacagt 70574



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>emb|BX004993.16| Zebrafish DNA sequence from clone CH211-163C2 in linkage group 7,
              complete sequence
          Length = 150136

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 63     acagtacatcatcctcatcat 83
              |||||||||||||||||||||
Sbjct: 125640 acagtacatcatcctcatcat 125660



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>emb|BX323881.7| Zebrafish DNA sequence from clone CH211-274G13 in linkage group 14,
              complete sequence
          Length = 157039

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 63     acagtacatcatcctcatcat 83
              |||||||||||||||||||||
Sbjct: 128445 acagtacatcatcctcatcat 128425



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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 64      cagtacatcatcctcatcatt 84
               |||||||||||||||||||||
Sbjct: 3820278 cagtacatcatcctcatcatt 3820258



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>emb|CT025527.7| Mouse DNA sequence from clone RP23-279J20 on chromosome 16, complete
              sequence
          Length = 202976

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 196    gaccagcagaatccagggac 215
              ||||||||||||||||||||
Sbjct: 160045 gaccagcagaatccagggac 160064



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>emb|Z82265.1|CEF02H6 Caenorhabditis elegans Cosmid F02H6, complete sequence
          Length = 34107

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 65   agtacatcatcctcatcatt 84
            ||||||||||||||||||||
Sbjct: 2425 agtacatcatcctcatcatt 2406



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>tpg|BK003523.1| TPA: TPA_inf: Drosophila melanogaster HDC02994 (HDC02994) gene,
            complete cds
          Length = 2573

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   cattgcatttcaaatttccc 32
            ||||||||||||||||||||
Sbjct: 1992 cattgcatttcaaatttccc 1973



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>gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complete sequence
          Length = 151902

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    aaatttccccccaagttacc 43
             ||||||||||||||||||||
Sbjct: 77542 aaatttccccccaagttacc 77561



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>gb|AC160646.2| Gallus gallus BAC clone CH261-24P2 from chromosome unknown, complete
             sequence
          Length = 212960

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    cacattgcatttcaaatttc 30
             ||||||||||||||||||||
Sbjct: 26652 cacattgcatttcaaatttc 26633



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>gb|AC009202.7| Drosophila melanogaster, chromosome 2L, region 36D-36D, BAC clone
              BACR06C11, complete sequence
          Length = 174500

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     cattgcatttcaaatttccc 32
              ||||||||||||||||||||
Sbjct: 148936 cattgcatttcaaatttccc 148917



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>gb|AC115004.14| Mus musculus chromosome 3, clone RP24-182K13, complete sequence
          Length = 141316

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   gaccagcagaatccagggac 215
             ||||||||||||||||||||
Sbjct: 79236 gaccagcagaatccagggac 79217



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>gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, region 36D-, BAC clones
             BACR01G10 and BACR05I08, complete sequence
          Length = 294942

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    cattgcatttcaaatttccc 32
             ||||||||||||||||||||
Sbjct: 16921 cattgcatttcaaatttccc 16902



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>gb|AE003656.2| Drosophila melanogaster chromosome 2L, section 65 of 83 of the complete
              sequence
          Length = 251192

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     cattgcatttcaaatttccc 32
              ||||||||||||||||||||
Sbjct: 179433 cattgcatttcaaatttccc 179414



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>emb|AL732627.14| Mouse DNA sequence from clone RP23-183L6 on chromosome 4, complete
             sequence
          Length = 202365

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   gaccagcagaatccagggac 215
             ||||||||||||||||||||
Sbjct: 57930 gaccagcagaatccagggac 57949



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>gb|AC164108.2| Mus musculus BAC clone RP24-96K15 from chromosome 16, complete sequence
          Length = 180800

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   gaccagcagaatccagggac 215
             ||||||||||||||||||||
Sbjct: 46705 gaccagcagaatccagggac 46724


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,400,198
Number of Sequences: 3902068
Number of extensions: 2400198
Number of successful extensions: 51615
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51586
Number of HSP's gapped (non-prelim): 28
length of query: 286
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 264
effective length of database: 17,147,199,772
effective search space: 4526860739808
effective search space used: 4526860739808
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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