Clone Name | rbart52g07 |
---|---|
Clone Library Name | barley_pub |
>dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin isoform, complete cds Length = 1343 Score = 529 bits (267), Expect = e-147 Identities = 283/287 (98%), Gaps = 1/287 (0%) Strand = Plus / Minus Query: 1 accgtacgtacacattgcatttcaaatttcccccc-aagttacctggatgcgtacatgac 59 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 1219 accgtacgtacacattgcatttcaaatttcccccccaagttacctggatgcgtacatgac 1160 Query: 60 atgacagtacatcatcctcatcattcataaacattacatggaagcaaacactgactgacg 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1159 atgacagtacatcatcctcatcattcataaacattacatggaagcaaacactgactgacg 1100 Query: 120 aagacacactcgatcggtagagaaaacaagcagcaagcgcgggcggcgagccgaggaaag 179 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1099 aagacacactcgatcggtagagaaaacaagcagcaagcgcgggcggcgagcagaggaaag 1040 Query: 180 cagaggcgcgcgcaaagaccagcagaatccagggaccccaacggaggcccctctgtcctc 239 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1039 cagagacgcgcgcaaagaccagcagaatccagggacccgaacggaggcccctctgtcctc 980 Query: 240 tgccatatctacagttcatacgcctccgaccatctagcggctgccga 286 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 979 tgccatatctacagttcatacgcctccgaccatctagcggctgccga 933
>gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, complete sequence Length = 218656 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 acattacatggaagcaaacac 110 ||||||||||||||||||||| Sbjct: 152543 acattacatggaagcaaacac 152563
>emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on chromosome 9p11.2-21 Contains the 3' end of the gene for a novel protein similar to sorting nexin 7 (SNX7), the TSCOT gene for thymic stromal co-transporter, a pseudogene similar to Mus musculus major urinary proteins and a CpG island, complete sequence Length = 141659 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 234 gtcctctgccatatctacagt 254 ||||||||||||||||||||| Sbjct: 70594 gtcctctgccatatctacagt 70574
>emb|BX004993.16| Zebrafish DNA sequence from clone CH211-163C2 in linkage group 7, complete sequence Length = 150136 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Plus Query: 63 acagtacatcatcctcatcat 83 ||||||||||||||||||||| Sbjct: 125640 acagtacatcatcctcatcat 125660
>emb|BX323881.7| Zebrafish DNA sequence from clone CH211-274G13 in linkage group 14, complete sequence Length = 157039 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 acagtacatcatcctcatcat 83 ||||||||||||||||||||| Sbjct: 128445 acagtacatcatcctcatcat 128425
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 42.1 bits (21), Expect = 0.95 Identities = 21/21 (100%) Strand = Plus / Minus Query: 64 cagtacatcatcctcatcatt 84 ||||||||||||||||||||| Sbjct: 3820278 cagtacatcatcctcatcatt 3820258
>emb|CT025527.7| Mouse DNA sequence from clone RP23-279J20 on chromosome 16, complete sequence Length = 202976 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 gaccagcagaatccagggac 215 |||||||||||||||||||| Sbjct: 160045 gaccagcagaatccagggac 160064
>emb|Z82265.1|CEF02H6 Caenorhabditis elegans Cosmid F02H6, complete sequence Length = 34107 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 agtacatcatcctcatcatt 84 |||||||||||||||||||| Sbjct: 2425 agtacatcatcctcatcatt 2406
>tpg|BK003523.1| TPA: TPA_inf: Drosophila melanogaster HDC02994 (HDC02994) gene, complete cds Length = 2573 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 cattgcatttcaaatttccc 32 |||||||||||||||||||| Sbjct: 1992 cattgcatttcaaatttccc 1973
>gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complete sequence Length = 151902 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aaatttccccccaagttacc 43 |||||||||||||||||||| Sbjct: 77542 aaatttccccccaagttacc 77561
>gb|AC160646.2| Gallus gallus BAC clone CH261-24P2 from chromosome unknown, complete sequence Length = 212960 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 cacattgcatttcaaatttc 30 |||||||||||||||||||| Sbjct: 26652 cacattgcatttcaaatttc 26633
>gb|AC009202.7| Drosophila melanogaster, chromosome 2L, region 36D-36D, BAC clone BACR06C11, complete sequence Length = 174500 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 cattgcatttcaaatttccc 32 |||||||||||||||||||| Sbjct: 148936 cattgcatttcaaatttccc 148917
>gb|AC115004.14| Mus musculus chromosome 3, clone RP24-182K13, complete sequence Length = 141316 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 gaccagcagaatccagggac 215 |||||||||||||||||||| Sbjct: 79236 gaccagcagaatccagggac 79217
>gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, region 36D-, BAC clones BACR01G10 and BACR05I08, complete sequence Length = 294942 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 cattgcatttcaaatttccc 32 |||||||||||||||||||| Sbjct: 16921 cattgcatttcaaatttccc 16902
>gb|AE003656.2| Drosophila melanogaster chromosome 2L, section 65 of 83 of the complete sequence Length = 251192 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 cattgcatttcaaatttccc 32 |||||||||||||||||||| Sbjct: 179433 cattgcatttcaaatttccc 179414
>emb|AL732627.14| Mouse DNA sequence from clone RP23-183L6 on chromosome 4, complete sequence Length = 202365 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 gaccagcagaatccagggac 215 |||||||||||||||||||| Sbjct: 57930 gaccagcagaatccagggac 57949
>gb|AC164108.2| Mus musculus BAC clone RP24-96K15 from chromosome 16, complete sequence Length = 180800 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 gaccagcagaatccagggac 215 |||||||||||||||||||| Sbjct: 46705 gaccagcagaatccagggac 46724 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,400,198 Number of Sequences: 3902068 Number of extensions: 2400198 Number of successful extensions: 51615 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51586 Number of HSP's gapped (non-prelim): 28 length of query: 286 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 264 effective length of database: 17,147,199,772 effective search space: 4526860739808 effective search space used: 4526860739808 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)