ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart52f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR293504.11| Zebrafish DNA sequence from clone CH211-147G3 i... 42 0.19
2gb|AC089993.2| Bos taurus clone RP42-553M7, complete sequence 40 0.76
3gb|DP000008.1| Bos taurus target 1 genomic scaffold 40 0.76
4gb|AC016522.10| Mus musculus chromosome 7, clone RP23-352D23, co... 40 0.76
5gb|AC005058.1|AC005058 Homo sapiens BAC clone CTB-54D4 from 7q31... 40 0.76
6gb|AC119171.10| Mus musculus chromosome 8, clone RP23-201B1, com... 40 0.76
7gb|AC165410.4| Mus musculus chromosome 8, clone RP23-267F17, com... 40 0.76
8gb|DQ158857.1| Bigelowiella natans nucleomorph chromosome 2, par... 38 3.0
9gb|AC021518.12| Homo sapiens chromosome 8, clone RP11-313D2, com... 38 3.0
10gb|AC012535.11| Homo sapiens chromosome 8, clone RP11-115G12, co... 38 3.0
11emb|BX510369.6| Zebrafish DNA sequence from clone CH211-126I22 i... 38 3.0
12gb|AC013492.5|AC013492 Homo sapiens chromosome , clone RP11-32K4... 38 3.0
13emb|CR925745.5| Zebrafish DNA sequence from clone DKEYP-100G5 in... 38 3.0
14emb|AL627102.21| Mouse DNA sequence from clone RP23-291A3 on chr... 38 3.0
15emb|AL663106.18| Mouse DNA sequence from clone CT7-314H19 on chr... 38 3.0

>emb|CR293504.11| Zebrafish DNA sequence from clone CH211-147G3 in linkage group 10,
              complete sequence
          Length = 165086

 Score = 42.1 bits (21), Expect = 0.19
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 16     aaactaataatgtacataggt 36
              |||||||||||||||||||||
Sbjct: 113910 aaactaataatgtacataggt 113930



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>gb|AC089993.2| Bos taurus clone RP42-553M7, complete sequence
          Length = 162859

 Score = 40.1 bits (20), Expect = 0.76
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    atttgaaaactaataatgta 29
             ||||||||||||||||||||
Sbjct: 53929 atttgaaaactaataatgta 53910



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>gb|DP000008.1| Bos taurus target 1 genomic scaffold
          Length = 2072671

 Score = 40.1 bits (20), Expect = 0.76
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 10      atttgaaaactaataatgta 29
               ||||||||||||||||||||
Sbjct: 1420435 atttgaaaactaataatgta 1420416



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>gb|AC016522.10| Mus musculus chromosome 7, clone RP23-352D23, complete sequence
          Length = 191935

 Score = 40.1 bits (20), Expect = 0.76
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    atgtacataggttatgccca 44
             ||||||||||||||||||||
Sbjct: 72213 atgtacataggttatgccca 72194



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>gb|AC005058.1|AC005058 Homo sapiens BAC clone CTB-54D4 from 7q31, complete sequence
          Length = 182256

 Score = 40.1 bits (20), Expect = 0.76
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 10    atttgaaaactaataatgtacata 33
             |||| |||||||||||||||||||
Sbjct: 48542 attttaaaactaataatgtacata 48565



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>gb|AC119171.10| Mus musculus chromosome 8, clone RP23-201B1, complete sequence
          Length = 192853

 Score = 40.1 bits (20), Expect = 0.76
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     gttgctacatttgaaaacta 21
             ||||||||||||||||||||
Sbjct: 30221 gttgctacatttgaaaacta 30202



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>gb|AC165410.4| Mus musculus chromosome 8, clone RP23-267F17, complete sequence
          Length = 163899

 Score = 40.1 bits (20), Expect = 0.76
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      gttgctacatttgaaaacta 21
              ||||||||||||||||||||
Sbjct: 110532 gttgctacatttgaaaacta 110551



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>gb|DQ158857.1| Bigelowiella natans nucleomorph chromosome 2, partial sequence
          Length = 134144

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 7     tacatttgaaaactaataatgta 29
             ||||||| |||||||||||||||
Sbjct: 24291 tacattttaaaactaataatgta 24313



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>gb|AC021518.12| Homo sapiens chromosome 8, clone RP11-313D2, complete sequence
          Length = 169566

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 10    atttgaaaactaataatgtacat 32
             |||||| ||||||||||||||||
Sbjct: 71516 atttgataactaataatgtacat 71494



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>gb|AC012535.11| Homo sapiens chromosome 8, clone RP11-115G12, complete sequence
          Length = 173414

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 10    atttgaaaactaataatgtacat 32
             |||||| ||||||||||||||||
Sbjct: 85405 atttgataactaataatgtacat 85383



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>emb|BX510369.6| Zebrafish DNA sequence from clone CH211-126I22 in linkage group 10,
              complete sequence
          Length = 168142

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 10     atttgaaaactaataatgtacat 32
              ||||||||||||| |||||||||
Sbjct: 130779 atttgaaaactaaaaatgtacat 130757



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>gb|AC013492.5|AC013492 Homo sapiens chromosome , clone RP11-32K4, complete sequence
          Length = 167174

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 10   atttgaaaactaataatgtacat 32
            |||||| ||||||||||||||||
Sbjct: 2884 atttgataactaataatgtacat 2862



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>emb|CR925745.5| Zebrafish DNA sequence from clone DKEYP-100G5 in linkage group 10,
             complete sequence
          Length = 197787

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 8     acatttgaaaactaataatgtacatag 34
             ||||||||||| ||||| |||||||||
Sbjct: 82557 acatttgaaaagtaatagtgtacatag 82583



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>emb|AL627102.21| Mouse DNA sequence from clone RP23-291A3 on chromosome 3, complete
             sequence
          Length = 211349

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    ataatgtacataggttatg 40
             |||||||||||||||||||
Sbjct: 51261 ataatgtacataggttatg 51279



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>emb|AL663106.18| Mouse DNA sequence from clone CT7-314H19 on chromosome 3, complete
             sequence
          Length = 177223

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    ataatgtacataggttatg 40
             |||||||||||||||||||
Sbjct: 37306 ataatgtacataggttatg 37288


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 685,673
Number of Sequences: 3902068
Number of extensions: 685673
Number of successful extensions: 47211
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47176
Number of HSP's gapped (non-prelim): 35
length of query: 75
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 54
effective length of database: 17,151,101,840
effective search space: 926159499360
effective search space used: 926159499360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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