ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart52f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NGFV_CRODU (Q9DEZ9) Venom nerve growth factor precursor (vNGF) 28 4.9
2NGFV_BUNMU (P34128) Vemon nerve growth factor precursor (v-NGF) 28 4.9
3NGFV1_PSETE (Q3HXY9) Venom nerve growth factor 1 precursor (vNGF-1) 28 6.4
4NGFV1_NAJSP (Q5YF90) Venom nerve growth factor 1 precursor (vNGF... 28 6.4
5NGFV1_HOPST (Q3HXY0) Venom nerve growth factor 1 precursor (vNGF-1) 28 6.4
6NIFY_AZOBR (P25315) Protein nifY 28 6.4
7FGL2_MOUSE (P12804) Fibroleukin precursor (Fibrinogen-like prote... 28 6.4

>NGFV_CRODU (Q9DEZ9) Venom nerve growth factor precursor (vNGF)|
          Length = 241

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 204 TSSFVVASTAAGRRSQWRSIGQPSSCVALV 115
           T++FV A T  G ++ WR I   S+CV ++
Sbjct: 204 TNTFVKALTMEGNQASWRFIRIDSACVCVI 233



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>NGFV_BUNMU (P34128) Vemon nerve growth factor precursor (v-NGF)|
          Length = 243

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 204 TSSFVVASTAAGRRSQWRSIGQPSSCVALV 115
           T +FV A T  G R+ WR I   ++CV ++
Sbjct: 207 TDTFVKALTMEGNRASWRFIRIDTACVCVI 236



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>NGFV1_PSETE (Q3HXY9) Venom nerve growth factor 1 precursor (vNGF-1)|
          Length = 243

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 204 TSSFVVASTAAGRRSQWRSIGQPSSCVALV 115
           T +FV A T  G R+ WR I   ++CV ++
Sbjct: 207 THTFVKALTMEGNRASWRFIRIDTACVCVI 236



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>NGFV1_NAJSP (Q5YF90) Venom nerve growth factor 1 precursor (vNGF-1) (Nerve|
           growth factor I)
          Length = 243

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 204 TSSFVVASTAAGRRSQWRSIGQPSSCVALV 115
           T +FV A T  G R+ WR I   ++CV ++
Sbjct: 207 THTFVKALTMEGNRASWRFIRIDTACVCVI 236



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>NGFV1_HOPST (Q3HXY0) Venom nerve growth factor 1 precursor (vNGF-1)|
          Length = 243

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 204 TSSFVVASTAAGRRSQWRSIGQPSSCVALV 115
           T +FV A T  G R+ WR I   ++CV ++
Sbjct: 207 TQTFVRALTMEGNRASWRFIRIDTACVCVI 236



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>NIFY_AZOBR (P25315) Protein nifY|
          Length = 227

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 132 KKAGQSISTGNAALQPSRPRQNCLSVASS 218
           + A  S STG+ AL   RPRQ C  V +S
Sbjct: 197 RHATASSSTGDVALAARRPRQRCRHVPAS 225



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>FGL2_MOUSE (P12804) Fibroleukin precursor (Fibrinogen-like protein 2)|
           (Prothrombinase) (Cytotoxic T-lymphocyte-specific
           protein)
          Length = 432

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = -1

Query: 185 PRRLQGGVPSGDRLASLLHVSPWWKVTCLSFSACNHVLIQKEKPAYNHVFLG 30
           P R     PSG+    L + S WW  +CLS +       QK K   N +F G
Sbjct: 352 PDRDNDRYPSGN--CGLYYSSGWWFDSCLSANLNGKYYHQKYKGVRNGIFWG 401


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,869,320
Number of Sequences: 219361
Number of extensions: 666434
Number of successful extensions: 1727
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1726
length of database: 80,573,946
effective HSP length: 52
effective length of database: 69,167,174
effective search space used: 1660012176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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