ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart52e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY736119.1| Triticum aestivum 20S proteasome beta 5 subunit m... 293 2e-76
2dbj|AK104520.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 9e-23
3dbj|AK104361.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 9e-23
4dbj|AK071652.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 9e-23
5dbj|AB026567.1| Oryza sativa (japonica cultivar-group) OsPBE1 mR... 115 9e-23
6gb|BT016601.1| Zea mays clone Contig434 mRNA sequence 109 6e-21
7gb|AY103704.1| Zea mays PCO130904 mRNA sequence 109 6e-21
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 76 8e-11
9dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic D... 76 8e-11
10gb|AF323592.1|AF323592 Prunus persica putative 20S proteasome be... 68 2e-08
11ref|NM_101176.2| Arabidopsis thaliana PBE1; endopeptidase/ pepti... 58 2e-05
12gb|AY150473.1| Arabidopsis thaliana proteasome epsilon chain pre... 58 2e-05
13emb|Y13695.1|ATY13695 Arabidopsis thaliana mRNA for proteasome s... 58 2e-05
14gb|AY050871.1| Arabidopsis thaliana putative proteasome epsilon ... 58 2e-05
15gb|AF348579.1| Arabidopsis thaliana clone C00191 (e) putative pr... 58 2e-05
16emb|BX815505.1|CNS0ABBC Arabidopsis thaliana Full-length cDNA Co... 58 2e-05
17emb|BX841869.1|CNS09Y42 Arabidopsis thaliana Full-length cDNA Co... 58 2e-05
18gb|AY089104.1| Arabidopsis thaliana clone 33591 mRNA, complete s... 58 2e-05
19gb|AC007357.2|F3F19 Arabidopsis thaliana chromosome 1 BAC F3F19 ... 58 2e-05
20gb|AF043536.1|AF043536 Arabidopsis thaliana 20S proteasome beta ... 58 2e-05
21emb|AJ291741.1|NTA291741 Nicotiana tabacum partial mRNA for puta... 52 0.001
22gb|AC126782.23| Medicago truncatula clone mth2-14p11, complete s... 48 0.018
23ref|XM_959619.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.29
24ref|XM_324730.1| Neurospora crassa OR74A hypothetical protein (N... 44 0.29
25emb|BX814144.1|CNS0AC2D Arabidopsis thaliana Full-length cDNA Co... 42 1.1
26gb|AY169345.1| Aeromonas schubertii strain CECT 4254 RNA polymer... 40 4.5
27gb|AY169344.1| Aeromonas enteropelogenes strain CECT 4255 RNA po... 40 4.5
28gb|AY169341.1| Aeromonas jandaei strain CECT 4228 RNA polymerase... 40 4.5
29gb|AY169336.1| Aeromonas schubertii strain CECT 4240 RNA polymer... 40 4.5
30gb|AY249198.1| Aeromonas enteropelogenes CECT 4935 RNA polymeras... 40 4.5
31gb|AY249196.1| Aeromonas jandaei 344 RNA polymerase sigma-70 fac... 40 4.5
32gb|AY646195.1| Canis familiaris tyrosine kinase receptor ron mRN... 40 4.5
33ref|XM_533823.2| PREDICTED: Canis familiaris tyrosine kinase rec... 40 4.5
34gb|DQ450069.1| Arachis hypogaea clone 6A4R2G 20S proteasome beta... 40 4.5
35emb|AL512412.7| Human DNA sequence from clone RP11-49H10 on chro... 40 4.5
36gb|AY127866.1| Aeromonas trota RNA polymerase sigma factor D gen... 40 4.5
37gb|AY127864.1| Aeromonas schubertii RNA polymerase sigma factor ... 40 4.5
38gb|AY127861.1| Aeromonas jandaei RNA polymerase sigma factor D g... 40 4.5
39emb|AL929352.1|PFA929352 Plasmodium falciparum strain 3D7, chrom... 40 4.5
40dbj|AP001625.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 4.5
41dbj|BS000135.1| Pan troglodytes chromosome 22 clone:RP43-114M01,... 40 4.5
42dbj|BS000229.1| Pan troglodytes chromosome 22 clone:RP43-015P20,... 40 4.5
43dbj|AP001747.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 4.5
44dbj|AP001626.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 4.5 
>gb|AY736119.1| Triticum aestivum 20S proteasome beta 5 subunit mRNA, complete cds
          Length = 860

 Score =  293 bits (148), Expect = 2e-76
 Identities = 205/224 (91%)
 Strand = Plus / Minus

                                                                       
Query: 117 acgacatgaatcaggttgacgcggaaggggcctcggccatctcttgctcgacgggagccg 176
           ||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 859 acgacatcaatcaggttgacgcagaaggggcctcggccatctcttgctcgacaggagccg 800

                                                                       
Query: 177 cctggaccgggtagtagtggtagtgcagctctccgacatcatctccggacagcttcttcc 236
           ||||||| |||||||||||||||||||||||||| ||||||||||| |||| ||||||||
Sbjct: 799 cctggactgggtagtagtggtagtgcagctctccaacatcatctccagacaacttcttcc 740

                                                                       
Query: 237 atccgtcagggccaacgtagtacacactaacgcaggcgccactggctccgtcacggaacg 296
           | |||||||||||||| ||||| |||||||| ||| | ||||| |||||||||||||| |
Sbjct: 739 agccgtcagggccaacatagtagacactaacacagccaccactagctccgtcacggaatg 680

                                                       
Query: 297 ttgcatgataaatagccctccgtgctaactcagcagcttcctca 340
           |||| || |||||||||| ||| |||||||||||||||||||||
Sbjct: 679 ttgcgtggtaaatagcccgccgagctaactcagcagcttcctca 636
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>dbj|AK104520.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-E06, full
           insert sequence
          Length = 1099

 Score =  115 bits (58), Expect = 9e-23
 Identities = 163/198 (82%)
 Strand = Plus / Minus

                                                                       
Query: 143 ggggcctcggccatctcttgctcgacgggagccgcctggaccgggtagtagtggtagtgc 202
           ||||| |||||||| || |||||||| ||||  ||||  ||||||||||| | |||||||
Sbjct: 880 ggggcatcggccatttcctgctcgacaggagtggcctcaaccgggtagtacttgtagtgc 821

                                                                       
Query: 203 agctctccgacatcatctccggacagcttcttccatccgtcagggccaacgtagtacaca 262
           ||||| || ||||||||||| || |||||| |||| ||||  |||||||| | ||| || 
Sbjct: 820 agctccccaacatcatctccagaaagcttcgtccagccgttcgggccaacatggtaaacg 761

                                                                       
Query: 263 ctaacgcaggcgccactggctccgtcacggaacgttgcatgataaatagccctccgtgct 322
           ||||| ||  | ||||| || || |||||||| || || || |||||||||| || ||||
Sbjct: 760 ctaacacaaccaccacttgccccatcacggaatgtagcttggtaaatagcccgccttgct 701

                             
Query: 323 aactcagcagcttcctca 340
           ||||||||||||||||||
Sbjct: 700 aactcagcagcttcctca 683
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>dbj|AK104361.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C04, full
           insert sequence
          Length = 1099

 Score =  115 bits (58), Expect = 9e-23
 Identities = 163/198 (82%)
 Strand = Plus / Minus

                                                                       
Query: 143 ggggcctcggccatctcttgctcgacgggagccgcctggaccgggtagtagtggtagtgc 202
           ||||| |||||||| || |||||||| ||||  ||||  ||||||||||| | |||||||
Sbjct: 880 ggggcatcggccatttcctgctcgacaggagtggcctcaaccgggtagtacttgtagtgc 821

                                                                       
Query: 203 agctctccgacatcatctccggacagcttcttccatccgtcagggccaacgtagtacaca 262
           ||||| || ||||||||||| || |||||| |||| ||||  |||||||| | ||| || 
Sbjct: 820 agctccccaacatcatctccagaaagcttcgtccagccgttcgggccaacatggtaaacg 761

                                                                       
Query: 263 ctaacgcaggcgccactggctccgtcacggaacgttgcatgataaatagccctccgtgct 322
           ||||| ||  | ||||| || || |||||||| || || || |||||||||| || ||||
Sbjct: 760 ctaacacaaccaccacttgccccatcacggaatgtagcttggtaaatagcccgccttgct 701

                             
Query: 323 aactcagcagcttcctca 340
           ||||||||||||||||||
Sbjct: 700 aactcagcagcttcctca 683
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>dbj|AK071652.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099E18, full
           insert sequence
          Length = 1217

 Score =  115 bits (58), Expect = 9e-23
 Identities = 163/198 (82%)
 Strand = Plus / Minus

                                                                       
Query: 143 ggggcctcggccatctcttgctcgacgggagccgcctggaccgggtagtagtggtagtgc 202
           ||||| |||||||| || |||||||| ||||  ||||  ||||||||||| | |||||||
Sbjct: 885 ggggcatcggccatttcctgctcgacaggagtggcctcaaccgggtagtacttgtagtgc 826

                                                                       
Query: 203 agctctccgacatcatctccggacagcttcttccatccgtcagggccaacgtagtacaca 262
           ||||| || ||||||||||| || |||||| |||| ||||  |||||||| | ||| || 
Sbjct: 825 agctccccaacatcatctccagaaagcttcgtccagccgttcgggccaacatggtaaacg 766

                                                                       
Query: 263 ctaacgcaggcgccactggctccgtcacggaacgttgcatgataaatagccctccgtgct 322
           ||||| ||  | ||||| || || |||||||| || || || |||||||||| || ||||
Sbjct: 765 ctaacacaaccaccacttgccccatcacggaatgtagcttggtaaatagcccgccttgct 706

                             
Query: 323 aactcagcagcttcctca 340
           ||||||||||||||||||
Sbjct: 705 aactcagcagcttcctca 688
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>dbj|AB026567.1| Oryza sativa (japonica cultivar-group) OsPBE1 mRNA for beta 5
           subunit of 20S proteasome, complete cds
          Length = 1233

 Score =  115 bits (58), Expect = 9e-23
 Identities = 163/198 (82%)
 Strand = Plus / Minus

                                                                       
Query: 143 ggggcctcggccatctcttgctcgacgggagccgcctggaccgggtagtagtggtagtgc 202
           ||||| |||||||| || |||||||| ||||  ||||  ||||||||||| | |||||||
Sbjct: 879 ggggcatcggccatttcctgctcgacaggagtggcctcaaccgggtagtacttgtagtgc 820

                                                                       
Query: 203 agctctccgacatcatctccggacagcttcttccatccgtcagggccaacgtagtacaca 262
           ||||| || ||||||||||| || |||||| |||| ||||  |||||||| | ||| || 
Sbjct: 819 agctccccaacatcatctccagaaagcttcgtccagccgttcgggccaacatggtaaacg 760

                                                                       
Query: 263 ctaacgcaggcgccactggctccgtcacggaacgttgcatgataaatagccctccgtgct 322
           ||||| ||  | ||||| || || |||||||| || || || |||||||||| || ||||
Sbjct: 759 ctaacacaaccaccacttgccccatcacggaatgtagcttggtaaatagcccgccttgct 700

                             
Query: 323 aactcagcagcttcctca 340
           ||||||||||||||||||
Sbjct: 699 aactcagcagcttcctca 682
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>gb|BT016601.1| Zea mays clone Contig434 mRNA sequence
          Length = 1072

 Score =  109 bits (55), Expect = 6e-21
 Identities = 133/159 (83%)
 Strand = Plus / Minus

                                                                       
Query: 182 accgggtagtagtggtagtgcagctctccgacatcatctccggacagcttcttccatccg 241
           |||||||||||||||||||||||||| ||||||||||| || || |||||| |||| || 
Sbjct: 852 accgggtagtagtggtagtgcagctccccgacatcatccccagaaagcttcgtccaacca 793

                                                                       
Query: 242 tcagggccaacgtagtacacactaacgcaggcgccactggctccgtcacggaacgttgca 301
           ||||||||||||| ||| |||||||| ||  | ||||| ||| | |||||||| ||||| 
Sbjct: 792 tcagggccaacgtggtaaacactaacacaaccaccacttgctgcatcacggaatgttgcc 733

                                                  
Query: 302 tgataaatagccctccgtgctaactcagcagcttcctca 340
             |||||||||||  || ||||| || || |||||||||
Sbjct: 732 ccataaatagcccgtcgcgctaattcggctgcttcctca 694
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>gb|AY103704.1| Zea mays PCO130904 mRNA sequence
          Length = 1115

 Score =  109 bits (55), Expect = 6e-21
 Identities = 133/159 (83%)
 Strand = Plus / Minus

                                                                       
Query: 182 accgggtagtagtggtagtgcagctctccgacatcatctccggacagcttcttccatccg 241
           |||||||||||||||||||||||||| ||||||||||| || || |||||| |||| || 
Sbjct: 877 accgggtagtagtggtagtgcagctccccgacatcatccccagaaagcttcgtccaacca 818

                                                                       
Query: 242 tcagggccaacgtagtacacactaacgcaggcgccactggctccgtcacggaacgttgca 301
           ||||||||||||| ||| |||||||| ||  | ||||| ||| | |||||||| ||||| 
Sbjct: 817 tcagggccaacgtggtaaacactaacacaaccaccacttgctgcatcacggaatgttgcc 758

                                                  
Query: 302 tgataaatagccctccgtgctaactcagcagcttcctca 340
             |||||||||||  || ||||| || || |||||||||
Sbjct: 757 ccataaatagcccgtcgcgctaattcggctgcttcctca 719
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 92/110 (83%)
 Strand = Plus / Plus

                                                                           
Query: 143     ggggcctcggccatctcttgctcgacgggagccgcctggaccgggtagtagtggtagtgc 202
               ||||| |||||||| || |||||||| ||||  ||||  ||||||||||| | |||||||
Sbjct: 2770397 ggggcatcggccatttcctgctcgacaggagtggcctcaaccgggtagtacttgtagtgc 2770456

                                                                 
Query: 203     agctctccgacatcatctccggacagcttcttccatccgtcagggccaac 252
               ||||| || ||||||||||| || |||||| |||| ||||  ||||||||
Sbjct: 2770457 agctccccaacatcatctccagaaagcttcgtccagccgttcgggccaac 2770506



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                     
Query: 287     tcacggaacgttgcatgataaatagccctccgtgctaactcagcagcttcctca 340
               |||||||| || || || |||||||||| || ||||||||||||||||||||||
Sbjct: 2770989 tcacggaatgtagcttggtaaatagcccgccttgctaactcagcagcttcctca 2771042
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>dbj|AP006533.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0085L11
          Length = 148142

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 92/110 (83%)
 Strand = Plus / Plus

                                                                         
Query: 143   ggggcctcggccatctcttgctcgacgggagccgcctggaccgggtagtagtggtagtgc 202
             ||||| |||||||| || |||||||| ||||  ||||  ||||||||||| | |||||||
Sbjct: 13878 ggggcatcggccatttcctgctcgacaggagtggcctcaaccgggtagtacttgtagtgc 13937

                                                               
Query: 203   agctctccgacatcatctccggacagcttcttccatccgtcagggccaac 252
             ||||| || ||||||||||| || |||||| |||| ||||  ||||||||
Sbjct: 13938 agctccccaacatcatctccagaaagcttcgtccagccgttcgggccaac 13987



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 48/54 (88%)
 Strand = Plus / Plus

                                                                   
Query: 287   tcacggaacgttgcatgataaatagccctccgtgctaactcagcagcttcctca 340
             |||||||| || || || |||||||||| || ||||||||||||||||||||||
Sbjct: 14470 tcacggaatgtagcttggtaaatagcccgccttgctaactcagcagcttcctca 14523
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>gb|AF323592.1|AF323592 Prunus persica putative 20S proteasome beta subunit 5 mRNA, partial
           cds
          Length = 817

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                       
Query: 275 ccactggctccgtcacggaacgttgcatgataaatagccctccgtgctaactcagcagct 334
           ||||||||||| |||||||| ||||||||||| |||||||| |  || ||||||||||||
Sbjct: 466 ccactggctccatcacggaatgttgcatgatatatagcccttctagccaactcagcagct 407

             
Query: 335 tc 336
           ||
Sbjct: 406 tc 405
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>ref|NM_101176.2| Arabidopsis thaliana PBE1; endopeptidase/ peptidase/ threonine
           endopeptidase AT1G13060 (PBE1) mRNA, complete cds
          Length = 1147

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 185 gggtagtagtggtagtgcagctctccgacatcatctccggacagcttcttccatccgtca 244
           |||||||| |||||||| ||||| || ||||||||||| || || ||| ||||||| || 
Sbjct: 884 gggtagtaatggtagtgtagctccccaacatcatctcctgatagtttcgtccatccttcg 825

                            
Query: 245 gggccaacgtagtacac 261
           || ||||||| ||||||
Sbjct: 824 ggaccaacgtggtacac 808
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>gb|AY150473.1| Arabidopsis thaliana proteasome epsilon chain precursor (At1g13060)
           mRNA, complete cds
          Length = 856

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 185 gggtagtagtggtagtgcagctctccgacatcatctccggacagcttcttccatccgtca 244
           |||||||| |||||||| ||||| || ||||||||||| || || ||| ||||||| || 
Sbjct: 773 gggtagtaatggtagtgtagctccccaacatcatctcctgatagtttcgtccatccttcg 714

                            
Query: 245 gggccaacgtagtacac 261
           || ||||||| ||||||
Sbjct: 713 ggaccaacgtggtacac 697
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>emb|Y13695.1|ATY13695 Arabidopsis thaliana mRNA for proteasome subunit prce
          Length = 1031

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 185 gggtagtagtggtagtgcagctctccgacatcatctccggacagcttcttccatccgtca 244
           |||||||| |||||||| ||||| || ||||||||||| || || ||| ||||||| || 
Sbjct: 799 gggtagtaatggtagtgtagctccccaacatcatctcctgatagtttcgtccatccttcg 740

                            
Query: 245 gggccaacgtagtacac 261
           || ||||||| ||||||
Sbjct: 739 ggaccaacgtggtacac 723
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>gb|AY050871.1| Arabidopsis thaliana putative proteasome epsilon chain precursor
           (At1g13060) mRNA, complete cds
          Length = 1091

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 185 gggtagtagtggtagtgcagctctccgacatcatctccggacagcttcttccatccgtca 244
           |||||||| |||||||| ||||| || ||||||||||| || || ||| ||||||| || 
Sbjct: 866 gggtagtaatggtagtgtagctccccaacatcatctcctgatagtttcgtccatccttcg 807

                            
Query: 245 gggccaacgtagtacac 261
           || ||||||| ||||||
Sbjct: 806 ggaccaacgtggtacac 790
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>gb|AF348579.1| Arabidopsis thaliana clone C00191 (e) putative proteasome epsilon
           chain precursor (At1g13060) mRNA, complete cds
          Length = 825

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 185 gggtagtagtggtagtgcagctctccgacatcatctccggacagcttcttccatccgtca 244
           |||||||| |||||||| ||||| || ||||||||||| || || ||| ||||||| || 
Sbjct: 773 gggtagtaatggtagtgtagctccccaacatcatctcctgatagtttcgtccatccttcg 714

                            
Query: 245 gggccaacgtagtacac 261
           || ||||||| ||||||
Sbjct: 713 ggaccaacgtggtacac 697
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>emb|BX815505.1|CNS0ABBC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS68ZF03 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1031

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 185 gggtagtagtggtagtgcagctctccgacatcatctccggacagcttcttccatccgtca 244
           |||||||| |||||||| ||||| || ||||||||||| || || ||| ||||||| || 
Sbjct: 866 gggtagtaatggtagtgtagctccccaacatcatctcctgatagtttcgtccatccttcg 807

                            
Query: 245 gggccaacgtagtacac 261
           || ||||||| ||||||
Sbjct: 806 ggaccaacgtggtacac 790
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>emb|BX841869.1|CNS09Y42 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH46ZD01 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1023

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 185 gggtagtagtggtagtgcagctctccgacatcatctccggacagcttcttccatccgtca 244
           |||||||| |||||||| ||||| || ||||||||||| || || ||| ||||||| || 
Sbjct: 811 gggtagtaatggtagtgtagctccccaacatcatctcctgatagtttcgtccatccttcg 752

                            
Query: 245 gggccaacgtagtacac 261
           || ||||||| ||||||
Sbjct: 751 ggaccaacgtggtacac 735
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>gb|AY089104.1| Arabidopsis thaliana clone 33591 mRNA, complete sequence
          Length = 1090

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 185 gggtagtagtggtagtgcagctctccgacatcatctccggacagcttcttccatccgtca 244
           |||||||| |||||||| ||||| || ||||||||||| || || ||| ||||||| || 
Sbjct: 883 gggtagtaatggtagtgtagctccccaacatcatctcctgatagtttcgtccatccttcg 824

                            
Query: 245 gggccaacgtagtacac 261
           || ||||||| ||||||
Sbjct: 823 ggaccaacgtggtacac 807
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>gb|AC007357.2|F3F19 Arabidopsis thaliana chromosome 1 BAC F3F19 sequence, complete sequence
          Length = 99758

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                         
Query: 185   gggtagtagtggtagtgcagctctccgacatcatctccggacagcttcttccatccgtca 244
             |||||||| |||||||| ||||| || ||||||||||| || || ||| ||||||| || 
Sbjct: 27301 gggtagtaatggtagtgtagctccccaacatcatctcctgatagtttcgtccatccttcg 27242

                              
Query: 245   gggccaacgtagtacac 261
             || ||||||| ||||||
Sbjct: 27241 ggaccaacgtggtacac 27225
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>gb|AF043536.1|AF043536 Arabidopsis thaliana 20S proteasome beta subunit PBE1 (PBE1) mRNA,
           complete cds
          Length = 1031

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 185 gggtagtagtggtagtgcagctctccgacatcatctccggacagcttcttccatccgtca 244
           |||||||| |||||||| ||||| || ||||||||||| || || ||| ||||||| || 
Sbjct: 799 gggtagtaatggtagtgtagctccccaacatcatctcctgatagtttcgtccatccttcg 740

                            
Query: 245 gggccaacgtagtacac 261
           || ||||||| ||||||
Sbjct: 739 ggaccaacgtggtacac 723
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>emb|AJ291741.1|NTA291741 Nicotiana tabacum partial mRNA for putative beta5 proteasome
           subunit (b5 gene)
          Length = 524

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 275 ccactggctccgtcacggaacgttgcatgataaatagc 312
           ||||| ||||| |||||||| |||||||||||||||||
Sbjct: 455 ccactagctccatcacggaatgttgcatgataaatagc 418
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>gb|AC126782.23| Medicago truncatula clone mth2-14p11, complete sequence
          Length = 135659

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 275   ccactggctccgtcacggaacgttgcatgataaatagccc 314
             ||||||||||| ||||| || |||||||||||||| ||||
Sbjct: 70087 ccactggctccatcacgaaatgttgcatgataaattgccc 70048
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>ref|XM_959619.1| Neurospora crassa OR74A hypothetical protein (NCU00551.1) partial
            mRNA
          Length = 7194

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 205  ctctccgacatcatctccggacagct 230
            ||||||||||||||||||| ||||||
Sbjct: 5801 ctctccgacatcatctccgcacagct 5776
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>ref|XM_324730.1| Neurospora crassa OR74A hypothetical protein (NCU00551.1) partial
            mRNA
          Length = 7194

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 205  ctctccgacatcatctccggacagct 230
            ||||||||||||||||||| ||||||
Sbjct: 5801 ctctccgacatcatctccgcacagct 5776
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>emb|BX814144.1|CNS0AC2D Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB59ZB11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 958

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                       
Query: 185 gggtagtagtggtagtgcagctctccgacatcatctccggacagcttcttccatccgtca 244
           |||||||| |||||||  ||||| || ||||||||||| || || ||| ||||| | || 
Sbjct: 785 gggtagtaatggtagtttagctccccaacatcatctcctgatagtttcgtccattcttcg 726

                            
Query: 245 gggccaacgtagtacac 261
           || ||||||| ||||||
Sbjct: 725 ggaccaacgtggtacac 709
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>gb|AY169345.1| Aeromonas schubertii strain CECT 4254 RNA polymerase sigma-70
           factor (rpoD) gene, partial cds
          Length = 825

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 205 ctctccgacatcatctccgg 224
           ||||||||||||||||||||
Sbjct: 141 ctctccgacatcatctccgg 160
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>gb|AY169344.1| Aeromonas enteropelogenes strain CECT 4255 RNA polymerase sigma-70
           factor (rpoD) gene, partial cds
          Length = 816

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 205 ctctccgacatcatctccgg 224
           ||||||||||||||||||||
Sbjct: 141 ctctccgacatcatctccgg 160
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>gb|AY169341.1| Aeromonas jandaei strain CECT 4228 RNA polymerase sigma-70 factor
           (rpoD) gene, partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 205 ctctccgacatcatctccgg 224
           ||||||||||||||||||||
Sbjct: 141 ctctccgacatcatctccgg 160
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>gb|AY169336.1| Aeromonas schubertii strain CECT 4240 RNA polymerase sigma-70
           factor (rpoD) gene, partial cds
          Length = 825

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 205 ctctccgacatcatctccgg 224
           ||||||||||||||||||||
Sbjct: 141 ctctccgacatcatctccgg 160
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>gb|AY249198.1| Aeromonas enteropelogenes CECT 4935 RNA polymerase sigma-70 factor
           (rpoD) gene, partial cds
          Length = 816

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 205 ctctccgacatcatctccgg 224
           ||||||||||||||||||||
Sbjct: 141 ctctccgacatcatctccgg 160
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>gb|AY249196.1| Aeromonas jandaei 344 RNA polymerase sigma-70 factor (rpoD) gene,
           partial cds
          Length = 819

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 205 ctctccgacatcatctccgg 224
           ||||||||||||||||||||
Sbjct: 141 ctctccgacatcatctccgg 160
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>gb|AY646195.1| Canis familiaris tyrosine kinase receptor ron mRNA, partial cds
          Length = 3121

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 72   ggaggaggcaaacaagcccc 91
            ||||||||||||||||||||
Sbjct: 2898 ggaggaggcaaacaagcccc 2917
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>ref|XM_533823.2| PREDICTED: Canis familiaris tyrosine kinase receptor ron (LOC444854),
            mRNA
          Length = 4351

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 72   ggaggaggcaaacaagcccc 91
            ||||||||||||||||||||
Sbjct: 4134 ggaggaggcaaacaagcccc 4153
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>gb|DQ450069.1| Arachis hypogaea clone 6A4R2G 20S proteasome beta subunit mRNA,
           partial cds
          Length = 802

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 275 ccactggctccgtcacggaacgttgcatgata 306
           ||||| ||||| |||||||| |||||||||||
Sbjct: 532 ccactagctccatcacggaatgttgcatgata 501
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>emb|AL512412.7| Human DNA sequence from clone RP11-49H10 on chromosome 1 Contains the
             3' end of the SMYD3 gene for SET and MYND domain
             containing 3 and a CpG island, complete sequence
          Length = 85198

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   gggagccgcctggaccgggt 188
             ||||||||||||||||||||
Sbjct: 82973 gggagccgcctggaccgggt 82992
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>gb|AY127866.1| Aeromonas trota RNA polymerase sigma factor D gene, partial cds
          Length = 841

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 205 ctctccgacatcatctccgg 224
           ||||||||||||||||||||
Sbjct: 169 ctctccgacatcatctccgg 188
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>gb|AY127864.1| Aeromonas schubertii RNA polymerase sigma factor D gene, partial
           cds
          Length = 850

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 205 ctctccgacatcatctccgg 224
           ||||||||||||||||||||
Sbjct: 169 ctctccgacatcatctccgg 188
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>gb|AY127861.1| Aeromonas jandaei RNA polymerase sigma factor D gene, partial cds
          Length = 844

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 205 ctctccgacatcatctccgg 224
           ||||||||||||||||||||
Sbjct: 169 ctctccgacatcatctccgg 188
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>emb|AL929352.1|PFA929352 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4
          Length = 313050

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   gtagtagtggtagtgcagct 206
             ||||||||||||||||||||
Sbjct: 76230 gtagtagtggtagtgcagct 76211
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>dbj|AP001625.1| Homo sapiens genomic DNA, chromosome 21, clone:KB907F12, MX1-D21S171
              region, complete sequence
          Length = 130626

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 77     aggcaaacaagccccaaagtccaa 100
              |||||||| |||||||||||||||
Sbjct: 126175 aggcaaaccagccccaaagtccaa 126198
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>dbj|BS000135.1| Pan troglodytes chromosome 22 clone:RP43-114M01, map 22, complete
             sequences
          Length = 73133

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 77    aggcaaacaagccccaaagtccaa 100
             |||||||| |||||||||||||||
Sbjct: 55245 aggcaaaccagccccaaagtccaa 55268
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>dbj|BS000229.1| Pan troglodytes chromosome 22 clone:RP43-015P20, map 22, complete
            sequences
          Length = 179285

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 77   aggcaaacaagccccaaagtccaa 100
            |||||||| |||||||||||||||
Sbjct: 9348 aggcaaaccagccccaaagtccaa 9371
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>dbj|AP001747.1| Homo sapiens genomic DNA, chromosome 21q, section 91/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 77     aggcaaacaagccccaaagtccaa 100
              |||||||| |||||||||||||||
Sbjct: 102328 aggcaaaccagccccaaagtccaa 102351
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>dbj|AP001626.1| Homo sapiens genomic DNA, chromosome 21, clone:KB1559F8, MX1-D21S171
             region, complete sequence
          Length = 145762

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 77    aggcaaacaagccccaaagtccaa 100
             |||||||| |||||||||||||||
Sbjct: 33375 aggcaaaccagccccaaagtccaa 33398


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,093,062
Number of Sequences: 3902068
Number of extensions: 2093062
Number of successful extensions: 36011
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35941
Number of HSP's gapped (non-prelim): 70
length of query: 340
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 318
effective length of database: 17,147,199,772
effective search space: 5452809527496
effective search space used: 5452809527496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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