ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart52e07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SNPH_HUMAN (O15079) Syntaphilin 29 2.7
2CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alph... 28 4.7
3EGF_RAT (P07522) Pro-epidermal growth factor precursor (EGF) [Co... 28 6.1
4Y764_XANAC (Q8PPC2) UPF0102 protein XAC0764 28 6.1
5ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing prote... 28 6.1

>SNPH_HUMAN (O15079) Syntaphilin|
          Length = 538

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 97  LTKTHSIGRENKQQARAASRGKQRRAQRPAESRDPNGGPSV 219
           LT+THS+   +   +R  S G +RR   P   RD  G  S+
Sbjct: 38  LTRTHSLMAMSLPGSRRTSAGSRRRTSPPVSVRDAYGTSSL 78



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>CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alpha-1G subunit|
           (Voltage-gated calcium channel alpha subunit Cav3.1)
          Length = 2254

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +1

Query: 34  VHDMTVHHPHHS*TLHGSKH*LTKTHSIGRENKQQARAASRGKQRRAQRPAESRDPNGGP 213
           VH +  HH HH    H   H    T  + R + +     + G +R    P  +  P+GGP
Sbjct: 491 VHHLVHHHHHH----HHHYHLGNGTLRVPRASPEIQDRDANGSRRLMLPPPSTPTPSGGP 546



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>EGF_RAT (P07522) Pro-epidermal growth factor precursor (EGF) [Contains:|
           Epidermal growth factor]
          Length = 1133

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +1

Query: 118 GRENKQQARAASRGKQRRAQ--RPAESRDPNGGPSVLYHIYS 237
           G EN+ QA  + R KQRR Q       RDPN   S     Y+
Sbjct: 306 GTENRAQASDSERCKQRRGQCLYSLSERDPNSDSSACAEGYT 347



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>Y764_XANAC (Q8PPC2) UPF0102 protein XAC0764|
          Length = 122

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = -2

Query: 250 RRRMNCRYGRGQRGLRWGPWILLVFARASAFLGSPPALAA 131
           R R + R+G G   + W     LV A A  FLG+ PALAA
Sbjct: 55  RYRRDDRFGGGAASVDWRKRRKLVLA-AQLFLGAHPALAA 93



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>ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing protein 1B (ARID|
           domain-containing protein 1B) (Osa homolog 2) (hOsa2)
           (p250R) (BRG1-binding protein hELD/OSA1)
           (BRG1-associated factor 250b) (BAF250B)
          Length = 2236

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = +1

Query: 52  HHPHHS*TLHGSKH*LTKTHSIGR-----ENKQQARAASRGKQRRAQRPAESRDPNGG 210
           HH HH+   H   H L   H++ +     + +QQ +   + +Q++ Q P  + +  GG
Sbjct: 85  HHHHHAHHHHHHAHHLHHHHALQQQLNQFQQQQQQQQQQQQQQQQQQHPISNNNSLGG 142


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,663,737
Number of Sequences: 219361
Number of extensions: 664092
Number of successful extensions: 1991
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1990
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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