ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart52e07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin isoform, complete cds Length = 1343 Score = 492 bits (248), Expect = e-136 Identities = 267/272 (98%), Gaps = 1/272 (0%) Strand = Plus / Minus Query: 2 atttcaaatttcccccc-aagttacctggatgcgtacatgacatgacagtacatcatcct 60 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1201 atttcaaatttcccccccaagttacctggatgcgtacatgacatgacagtacatcatcct 1142 Query: 61 catcattcataaacattacatggaagcaaacactgactgacgaagacacactcgatcggt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1141 catcattcataaacattacatggaagcaaacactgactgacgaagacacactcgatcggt 1082 Query: 121 agagaaaacaagcagcaagcgcgggcggcgagccgaggaaagcagaggcgcgcgcaaaga 180 ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct: 1081 agagaaaacaagcagcaagcgcgggcggcgagcagaggaaagcagagacgcgcgcaaaga 1022 Query: 181 ccagcagaatccagggaccccaacggaggcccctctgtcctctaccatatctacagttca 240 |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct: 1021 ccagcagaatccagggacccgaacggaggcccctctgtcctctgccatatctacagttca 962 Query: 241 tacgcctccgaccatctagcggctgccgaagg 272 |||||||||||||||||||||||||||||||| Sbjct: 961 tacgcctccgaccatctagcggctgccgaagg 930
>gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, complete sequence Length = 218656 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 acattacatggaagcaaacac 93 ||||||||||||||||||||| Sbjct: 152543 acattacatggaagcaaacac 152563
>emb|BX004993.16| Zebrafish DNA sequence from clone CH211-163C2 in linkage group 7, complete sequence Length = 150136 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 acagtacatcatcctcatcat 66 ||||||||||||||||||||| Sbjct: 125640 acagtacatcatcctcatcat 125660
>emb|BX323881.7| Zebrafish DNA sequence from clone CH211-274G13 in linkage group 14, complete sequence Length = 157039 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Minus Query: 46 acagtacatcatcctcatcat 66 ||||||||||||||||||||| Sbjct: 128445 acagtacatcatcctcatcat 128425
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 42.1 bits (21), Expect = 0.90 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 cagtacatcatcctcatcatt 67 ||||||||||||||||||||| Sbjct: 3820278 cagtacatcatcctcatcatt 3820258
>emb|CT025527.7| Mouse DNA sequence from clone RP23-279J20 on chromosome 16, complete sequence Length = 202976 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 gaccagcagaatccagggac 198 |||||||||||||||||||| Sbjct: 160045 gaccagcagaatccagggac 160064
>emb|Z82265.1|CEF02H6 Caenorhabditis elegans Cosmid F02H6, complete sequence Length = 34107 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 agtacatcatcctcatcatt 67 |||||||||||||||||||| Sbjct: 2425 agtacatcatcctcatcatt 2406
>gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complete sequence Length = 151902 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 aaatttccccccaagttacc 26 |||||||||||||||||||| Sbjct: 77542 aaatttccccccaagttacc 77561
>gb|AC115004.14| Mus musculus chromosome 3, clone RP24-182K13, complete sequence Length = 141316 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 gaccagcagaatccagggac 198 |||||||||||||||||||| Sbjct: 79236 gaccagcagaatccagggac 79217
>emb|AL732627.14| Mouse DNA sequence from clone RP23-183L6 on chromosome 4, complete sequence Length = 202365 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 gaccagcagaatccagggac 198 |||||||||||||||||||| Sbjct: 57930 gaccagcagaatccagggac 57949
>gb|AC164108.2| Mus musculus BAC clone RP24-96K15 from chromosome 16, complete sequence Length = 180800 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 gaccagcagaatccagggac 198 |||||||||||||||||||| Sbjct: 46705 gaccagcagaatccagggac 46724 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,227,259 Number of Sequences: 3902068 Number of extensions: 2227259 Number of successful extensions: 44845 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44820 Number of HSP's gapped (non-prelim): 24 length of query: 272 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 250 effective length of database: 17,147,199,772 effective search space: 4286799943000 effective search space used: 4286799943000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
