ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart52e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KPC1_TRIRE (Q99014) Protein kinase C-like (EC 2.7.11.13) 28 5.8
2BEND_ACIAD (P07772) 1,6-dihydroxycyclohexa-2,4-diene-1-carboxyla... 28 5.8

>KPC1_TRIRE (Q99014) Protein kinase C-like (EC 2.7.11.13)|
          Length = 1139

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 15/71 (21%)
 Frame = -1

Query: 253 PSDVADEKH-----AEEASKN*RPSSTRMSLILYQTPVLADN----------ELRIDERH 119
           PSD+A  +H        A+   RP+ T++ LI Y TP L             +L ++E++
Sbjct: 110 PSDLAPPRHNFGAPGPGAASKARPNFTKLDLIKYDTPYLGPRIQHMLSQIQFKLNVEEQY 169

Query: 118 G*DLPSVAQVY 86
              +  + Q+Y
Sbjct: 170 LKGVEKMVQLY 180



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>BEND_ACIAD (P07772) 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate|
           dehydrogenase (EC 1.3.1.25)
           (Cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate
           dehydrogenase)
           (Cis-1,2-dihydroxy-3,4-cyclohexadiene-1-carboxylate
           dehydrogenase) (2-hydro-1,2-dihydroxyben
          Length = 261

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 6   HKSLFP*IWVCVQTTNHQIKHNQ 74
           H+SLFP +W C       +KH Q
Sbjct: 115 HRSLFPALWCCRAVLPEMLKHQQ 137


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,862,187
Number of Sequences: 219361
Number of extensions: 761322
Number of successful extensions: 1372
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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