ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart52e06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L23552.1|SPIHSC70G Spinacia oleracea ER-lumenal protein (HSC7... 46 0.068
2gb|AC163672.4| Mus musculus BAC clone RP23-23B15 from chromosome... 42 1.1
3emb|AL356277.18| Human DNA sequence from clone RP11-554D15 on ch... 42 1.1
4gb|AC158522.2| Mus musculus BAC clone RP23-400N21 from chromosom... 42 1.1
5gb|AC011900.6| Homo sapiens BAC clone RP11-542L18 from 2, comple... 42 1.1
6gb|AC139333.4| Mus musculus BAC clone RP24-83F12 from 3, complet... 42 1.1
7gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete se... 40 4.2
8gb|AC110816.7| Mus musculus BAC clone RP23-20P15 from chromosome... 40 4.2
9gb|AC124492.4| Mus musculus BAC clone RP23-454I23 from chromosom... 40 4.2
10gb|AY367771.1| Triticum aestivum HMW glutenin subunit (1Bx14) ge... 40 4.2
11gb|AE016828.2| Coxiella burnetii RSA 493, complete genome 40 4.2
12gb|AC115080.13| Mus musculus chromosome 7, clone RP24-464M7, com... 40 4.2
13emb|AL808018.7| Mouse DNA sequence from clone RP23-473C10 on chr... 40 4.2
14gb|AC121109.5| Mus musculus chromosome 7, clone RP24-445I8, comp... 40 4.2

>gb|L23552.1|SPIHSC70G Spinacia oleracea ER-lumenal protein (HSC70) gene, complete cds
          Length = 5138

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 41   tcaaacaacaaatcatcagataa 63
            |||||||||||||||||||||||
Sbjct: 2400 tcaaacaacaaatcatcagataa 2378



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>gb|AC163672.4| Mus musculus BAC clone RP23-23B15 from chromosome 3, complete sequence
          Length = 190599

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 6      cataagtccttattcccatga 26
              |||||||||||||||||||||
Sbjct: 183885 cataagtccttattcccatga 183905



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>emb|AL356277.18| Human DNA sequence from clone RP11-554D15 on chromosome 6 Contains a
              pseudogene similar to part of ubiquinol-cytochrome c
              reductase core protein II (UQCRC2), a novel gene and the 3'
              ends of two novel genes, complete sequence
          Length = 181891

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 56     tcagataaaacataaccaatc 76
              |||||||||||||||||||||
Sbjct: 164956 tcagataaaacataaccaatc 164976



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>gb|AC158522.2| Mus musculus BAC clone RP23-400N21 from chromosome 14, complete sequence
          Length = 209322

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 19     tcccatgaatttgggtatgcg 39
              |||||||||||||||||||||
Sbjct: 149694 tcccatgaatttgggtatgcg 149674



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>gb|AC011900.6| Homo sapiens BAC clone RP11-542L18 from 2, complete sequence
          Length = 184053

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 204   cagttcttgctagcttcttca 224
             |||||||||||||||||||||
Sbjct: 59570 cagttcttgctagcttcttca 59550



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>gb|AC139333.4| Mus musculus BAC clone RP24-83F12 from 3, complete sequence
          Length = 162197

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 6      cataagtccttattcccatga 26
              |||||||||||||||||||||
Sbjct: 111065 cataagtccttattcccatga 111045



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>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence
          Length = 285506

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    tctcagttcattgtcagcca 153
              ||||||||||||||||||||
Sbjct: 185365 tctcagttcattgtcagcca 185384



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>gb|AC110816.7| Mus musculus BAC clone RP23-20P15 from chromosome 12, complete sequence
          Length = 216095

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     ttcccatgaatttgggtatg 37
              ||||||||||||||||||||
Sbjct: 172527 ttcccatgaatttgggtatg 172546



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>gb|AC124492.4| Mus musculus BAC clone RP23-454I23 from chromosome 12, complete sequence
          Length = 176782

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     ttcccatgaatttgggtatg 37
              ||||||||||||||||||||
Sbjct: 136913 ttcccatgaatttgggtatg 136894



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>gb|AY367771.1| Triticum aestivum HMW glutenin subunit (1Bx14) gene, complete cds
          Length = 4021

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 134  tctcagttcattgtcagcca 153
            ||||||||||||||||||||
Sbjct: 3715 tctcagttcattgtcagcca 3734



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>gb|AE016828.2| Coxiella burnetii RSA 493, complete genome
          Length = 1995281

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 37      gcgttcaaacaacaaatcat 56
               ||||||||||||||||||||
Sbjct: 1285292 gcgttcaaacaacaaatcat 1285311



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>gb|AC115080.13| Mus musculus chromosome 7, clone RP24-464M7, complete sequence
          Length = 158221

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   tctattctcagttcattgtc 148
             ||||||||||||||||||||
Sbjct: 58151 tctattctcagttcattgtc 58132



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>emb|AL808018.7| Mouse DNA sequence from clone RP23-473C10 on chromosome X, complete
             sequence
          Length = 172723

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    ttcccatgaatttgggtatg 37
             ||||||||||||||||||||
Sbjct: 16859 ttcccatgaatttgggtatg 16840



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>gb|AC121109.5| Mus musculus chromosome 7, clone RP24-445I8, complete sequence
          Length = 167819

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    tctattctcagttcattgtc 148
              ||||||||||||||||||||
Sbjct: 137296 tctattctcagttcattgtc 137277


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,169,567
Number of Sequences: 3902068
Number of extensions: 2169567
Number of successful extensions: 40169
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40140
Number of HSP's gapped (non-prelim): 29
length of query: 319
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 297
effective length of database: 17,147,199,772
effective search space: 5092718332284
effective search space used: 5092718332284
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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