ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart52e04 |
|---|---|
| Clone Library Name | barley_pub |
>PPA1_LYCES (P27061) Acid phosphatase 1 precursor (EC 3.1.3.2) (Apase-1(1))| Length = 255 Score = 52.0 bits (123), Expect = 4e-07 Identities = 22/31 (70%), Positives = 26/31 (83%) Frame = -2 Query: 311 IVGNIGDQWSDILGAPEGARTFKLPDPMYYI 219 IVGN GDQWSD+LG+ R+FKLP+PMYYI Sbjct: 224 IVGNSGDQWSDLLGSSMSYRSFKLPNPMYYI 254
>VSPB_SOYBN (P10743) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein B) Length = 254 Score = 50.4 bits (119), Expect = 1e-06 Identities = 24/32 (75%), Positives = 27/32 (84%), Gaps = 1/32 (3%) Frame = -2 Query: 311 IVGNIGDQWSDILGAPEG-ARTFKLPDPMYYI 219 IVG IGDQWSD+LG G +RTFKLP+PMYYI Sbjct: 222 IVGIIGDQWSDLLGDHRGESRTFKLPNPMYYI 253
>VSPA_SOYBN (P15490) Stem 28 kDa glycoprotein precursor (Vegetative storage| protein A) Length = 254 Score = 50.1 bits (118), Expect = 1e-06 Identities = 23/32 (71%), Positives = 27/32 (84%), Gaps = 1/32 (3%) Frame = -2 Query: 311 IVGNIGDQWSDILGAPEG-ARTFKLPDPMYYI 219 IVG IGDQWSD+LG G +RTFKLP+P+YYI Sbjct: 222 IVGIIGDQWSDLLGGHRGESRTFKLPNPLYYI 253
>VSP1_ARATH (O49195) Vegetative storage protein 1 precursor| Length = 270 Score = 44.7 bits (104), Expect = 6e-05 Identities = 19/31 (61%), Positives = 25/31 (80%) Frame = -2 Query: 311 IVGNIGDQWSDILGAPEGARTFKLPDPMYYI 219 IVGNIGDQW+D++ G R FKLP+P+YY+ Sbjct: 239 IVGNIGDQWADLVEDTPG-RVFKLPNPLYYV 268
>VSP2_ARATH (O82122) Vegetative storage protein 2 precursor| Length = 265 Score = 44.7 bits (104), Expect = 6e-05 Identities = 19/31 (61%), Positives = 25/31 (80%) Frame = -2 Query: 311 IVGNIGDQWSDILGAPEGARTFKLPDPMYYI 219 IVGNIGDQW+D++ G R FKLP+P+YY+ Sbjct: 234 IVGNIGDQWADLVEDTPG-RVFKLPNPLYYV 263
>S25K_SOYBN (P10742) Stem 31 kDa glycoprotein precursor (Vegetative storage| protein VSP25) (Fragment) Length = 291 Score = 42.4 bits (98), Expect = 3e-04 Identities = 20/28 (71%), Positives = 23/28 (82%), Gaps = 1/28 (3%) Frame = -2 Query: 311 IVGNIGDQWSDILGAPEG-ARTFKLPDP 231 IVG IGDQWSD+LG G +RTFKLP+P Sbjct: 219 IVGIIGDQWSDLLGGHRGESRTFKLPNP 246
>DLDH_SHIFL (P0A9P3) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 0.53 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +3 Query: 162 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 263 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECOLI (P0A9P0) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 0.53 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +3 Query: 162 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 263 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECOL6 (P0A9P1) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 0.53 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +3 Query: 162 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 263 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>DLDH_ECO57 (P0A9P2) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (E3 component of| pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) Length = 473 Score = 31.6 bits (70), Expect = 0.53 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +3 Query: 162 ELIREINGSMPGRARGGLADVVHGVGQLEGAGTL 263 ++I ++ G + G A+G VV+G+G+ GA TL Sbjct: 91 KVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTL 124
>AAD6_YEAST (P43547) Putative aryl-alcohol dehydrogenase AAD6 (EC 1.1.1.-)| Length = 212 Score = 30.8 bits (68), Expect = 0.90 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -2 Query: 302 NIGDQWSDILGAPEGARTFKLPDPMY 225 +IGD WS+ILG+ R F+L D Y Sbjct: 38 SIGDAWSEILGSMSKERAFELLDAFY 63
>RL16_LISMO (Q927L4) 50S ribosomal protein L16| Length = 144 Score = 28.5 bits (62), Expect = 4.5 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +3 Query: 141 MHITKSIELIREINGSMPGRARGGLADVVHGVGQLEGAGTLW 266 M + K ++ RE G+M GRA+GG +V G L+ W Sbjct: 1 MLVPKRVKYRREFRGNMRGRAKGG-TEVAFGEYGLQAVEASW 41
>RL16_LISMF (Q71WF3) 50S ribosomal protein L16| Length = 144 Score = 28.5 bits (62), Expect = 4.5 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +3 Query: 141 MHITKSIELIREINGSMPGRARGGLADVVHGVGQLEGAGTLW 266 M + K ++ RE G+M GRA+GG +V G L+ W Sbjct: 1 MLVPKRVKYRREFRGNMRGRAKGG-TEVAFGEYGLQAVEASW 41
>RL16_LISIN (Q7ANU4) 50S ribosomal protein L16| Length = 144 Score = 28.5 bits (62), Expect = 4.5 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +3 Query: 141 MHITKSIELIREINGSMPGRARGGLADVVHGVGQLEGAGTLW 266 M + K ++ RE G+M GRA+GG +V G L+ W Sbjct: 1 MLVPKRVKYRREFRGNMRGRAKGG-TEVAFGEYGLQAVEASW 41
>PRM2_PIG (P19757) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 92 Score = 27.7 bits (60), Expect = 7.6 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Frame = +2 Query: 146 YN*EHRAYSRNQWQHARPSQRRPSRCSTWGRAA*RCGHPLARRGCR--STGRRCYRR 310 Y HR R ++H ++RR S C R A C H RRGCR RRC RR Sbjct: 40 YGRTHRG--RYHYRHRSHTRRRRS-CRRRRRRA--CRHRRHRRGCRRIRRRRRCRRR 91
>TTF2_MOUSE (Q5NC05) Transcription termination factor 2 (EC 3.6.1.-) (RNA| polymerase II termination factor) (Transcription release factor 2) Length = 1184 Score = 27.7 bits (60), Expect = 7.6 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = -1 Query: 261 GCPHLQAARPHVLHRLGRLW-LGRACCH 181 GCP + RP +H L +L L + CCH Sbjct: 924 GCPAADSQRPSTVHVLSQLLRLRQCCCH 951
>ZN206_HUMAN (Q96SZ4) Zinc finger protein 206 (Zinc finger and SCAN| domain-containing protein 10) Length = 725 Score = 27.7 bits (60), Expect = 7.6 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 9/65 (13%) Frame = +2 Query: 128 YLTKHAYN*EHRAYSRNQWQHARPSQRRPSRCSTWGRAA*RCGHPLARR---------GC 280 +L HA + + R+ S R S RRP CS G+A R H +A R C Sbjct: 439 HLRIHARDKDRRS-SEGSGSRRRDSDRRPFVCSDCGKAFRRSEHLVAHRRVHTGERPFSC 497 Query: 281 RSTGR 295 ++ GR Sbjct: 498 QACGR 502
>CTR9_YEAST (P89105) Protein CTR9| Length = 1077 Score = 27.7 bits (60), Expect = 7.6 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -1 Query: 246 QAARPHVLHRLGRLWLGRA 190 + RPH+L+ LGR W RA Sbjct: 764 EKTRPHILNLLGRAWYARA 782
>IDI2_RICFE (Q4ULD7) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP| isomerase) (Isopentenyl pyrophosphate isomerase) Length = 345 Score = 27.3 bits (59), Expect = 10.0 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = +3 Query: 114 NWGLII*RNMHITKSIELIREINGSMPGRARGGLADVVHG 233 NWG+ S++++RE++G +P A GGL + G Sbjct: 251 NWGI------PTLDSLKMVREVSGDIPIIASGGLKSGIDG 284 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,396,554 Number of Sequences: 219361 Number of extensions: 695950 Number of successful extensions: 1692 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 1656 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1687 length of database: 80,573,946 effective HSP length: 79 effective length of database: 63,244,427 effective search space used: 1517866248 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
