ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart52e01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT017380.1| Zea mays clone EL01N0326D06.c mRNA sequence Length = 781 Score = 190 bits (96), Expect = 2e-45 Identities = 162/184 (88%) Strand = Plus / Minus Query: 179 cgggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 238 |||||||||||||||||||| |||| ||||| |||||||||||| ||||||||| |||| Sbjct: 505 cgggagcactcggcggggaagccctgcgggaatcgccagccgtcgtcgcagtagttgtag 446 Query: 239 tgcatgtagttcctcctggcccagtcgagggtgccgcgctcggcggcgctgggccggcgc 298 |||||||||||| |||||||||| ||| |||||| | |||||||||| | || |||| Sbjct: 445 tgcatgtagttctgcctggcccaggcgacggtgccccactcggcggcgtcgagctggcgg 386 Query: 299 gtcatccagcggtcggtgccggcggggcatgcgagcgggcggccggcgccggcgggcacg 358 |||||||||||||||||||||||||||| | ||||||||||||| ||||| |||||||| Sbjct: 385 ctcatccagcggtcggtgccggcggggcaggagagcgggcggccgtcgccgtcgggcacg 326 Query: 359 cagg 362 |||| Sbjct: 325 cagg 322
>gb|AY106262.1| Zea mays PCO111648 mRNA sequence Length = 1257 Score = 190 bits (96), Expect = 2e-45 Identities = 162/184 (88%) Strand = Plus / Minus Query: 179 cgggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 238 |||||||||||||||||||| |||| ||||| |||||||||||| ||||||||| |||| Sbjct: 983 cgggagcactcggcggggaagccctgcgggaagcgccagccgtcgtcgcagtagttgtag 924 Query: 239 tgcatgtagttcctcctggcccagtcgagggtgccgcgctcggcggcgctgggccggcgc 298 |||||||||||| |||||||||| ||| |||||| | |||||||||| | || |||| Sbjct: 923 tgcatgtagttctgcctggcccaggcgacggtgccccactcggcggcgtcgagctggcgg 864 Query: 299 gtcatccagcggtcggtgccggcggggcatgcgagcgggcggccggcgccggcgggcacg 358 |||||||||||||||||||||||||||| | ||||||||||||| ||||| |||||||| Sbjct: 863 ctcatccagcggtcggtgccggcggggcaggagagcgggcggccgtcgccgtcgggcacg 804 Query: 359 cagg 362 |||| Sbjct: 803 cagg 800
>emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (PM5) Length = 1188 Score = 95.6 bits (48), Expect = 9e-17 Identities = 84/96 (87%) Strand = Plus / Minus Query: 179 cgggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 238 |||||||||||||||||||| || |||||||| ||||||||||||| ||||||||||||| Sbjct: 906 cgggagcactcggcggggaagccgttggggaagcgccagccgtcggtgcagtagtcgtag 847 Query: 239 tgcatgtagttcctcctggcccagtcgagggtgccg 274 |||||| || ||| ||||||| ||| ||||||| Sbjct: 846 gacatgtacttgctctcggcccaggcgacggtgccg 811
>ref|XM_507172.1| PREDICTED Oryza sativa (japonica cultivar-group), P0682A06.17 mRNA Length = 1127 Score = 89.7 bits (45), Expect = 6e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 183 agcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgca 242 |||||||||||||||| |||| |||||| |||||||||||||||||||||| |||| || Sbjct: 905 agcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggaca 846 Query: 243 tgtagttcctcctggcccagtcgagggtgccgcgctcggcg 283 ||||||| | | |||||| ||| ||||||| |||||||| Sbjct: 845 tgtagttgcgctcggcccacgcgacggtgccgagctcggcg 805
>ref|XM_480868.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1111 Score = 89.7 bits (45), Expect = 6e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 183 agcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgca 242 |||||||||||||||| |||| |||||| |||||||||||||||||||||| |||| || Sbjct: 910 agcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggaca 851 Query: 243 tgtagttcctcctggcccagtcgagggtgccgcgctcggcg 283 ||||||| | | |||||| ||| ||||||| |||||||| Sbjct: 850 tgtagttgcgctcggcccacgcgacggtgccgagctcggcg 810
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 89.7 bits (45), Expect = 6e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 183 agcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgca 242 |||||||||||||||| |||| |||||| |||||||||||||||||||||| |||| || Sbjct: 8322676 agcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggaca 8322617 Query: 243 tgtagttcctcctggcccagtcgagggtgccgcgctcggcg 283 ||||||| | | |||||| ||| ||||||| |||||||| Sbjct: 8322616 tgtagttgcgctcggcccacgcgacggtgccgagctcggcg 8322576
>dbj|AB110604.1| Oryza sativa (japonica cultivar-group) OsXRT5 mRNA for xyloglucan endotransglycosylase-related protein 5, complete cds Length = 1280 Score = 89.7 bits (45), Expect = 6e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 183 agcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgca 242 |||||||||||||||| |||| |||||| |||||||||||||||||||||| |||| || Sbjct: 901 agcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggaca 842 Query: 243 tgtagttcctcctggcccagtcgagggtgccgcgctcggcg 283 ||||||| | | |||||| ||| ||||||| |||||||| Sbjct: 841 tgtagttgcgctcggcccacgcgacggtgccgagctcggcg 801
>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0682A06 Length = 142023 Score = 89.7 bits (45), Expect = 6e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 183 agcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgca 242 |||||||||||||||| |||| |||||| |||||||||||||||||||||| |||| || Sbjct: 62785 agcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggaca 62726 Query: 243 tgtagttcctcctggcccagtcgagggtgccgcgctcggcg 283 ||||||| | | |||||| ||| ||||||| |||||||| Sbjct: 62725 tgtagttgcgctcggcccacgcgacggtgccgagctcggcg 62685
>dbj|AK104451.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F05, full insert sequence Length = 1111 Score = 89.7 bits (45), Expect = 6e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 183 agcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgca 242 |||||||||||||||| |||| |||||| |||||||||||||||||||||| |||| || Sbjct: 910 agcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggaca 851 Query: 243 tgtagttcctcctggcccagtcgagggtgccgcgctcggcg 283 ||||||| | | |||||| ||| ||||||| |||||||| Sbjct: 850 tgtagttgcgctcggcccacgcgacggtgccgagctcggcg 810
>dbj|AK060654.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H12, full insert sequence Length = 1127 Score = 89.7 bits (45), Expect = 6e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 183 agcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgca 242 |||||||||||||||| |||| |||||| |||||||||||||||||||||| |||| || Sbjct: 905 agcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggaca 846 Query: 243 tgtagttcctcctggcccagtcgagggtgccgcgctcggcg 283 ||||||| | | |||||| ||| ||||||| |||||||| Sbjct: 845 tgtagttgcgctcggcccacgcgacggtgccgagctcggcg 805
>gb|AY589587.1| Triticum aestivum endotransglucosylase/hydrolase XTH3 mRNA, complete cds Length = 938 Score = 87.7 bits (44), Expect = 2e-14 Identities = 83/96 (86%) Strand = Plus / Minus Query: 179 cgggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 238 |||| ||||||||||||||| || |||||||| ||||||||||||| ||||||||||||| Sbjct: 894 cgggtgcactcggcggggaatccgttggggaagcgccagccgtcggtgcagtagtcgtag 835 Query: 239 tgcatgtagttcctcctggcccagtcgagggtgccg 274 |||||| || ||| ||||||| ||| ||||||| Sbjct: 834 gacatgtacttgctctcggcccaggcgacggtgccg 799
>gb|AY589586.1| Triticum aestivum endotransglucosylase/hydrolase XTH2 mRNA, complete cds Length = 1107 Score = 85.7 bits (43), Expect = 9e-14 Identities = 79/91 (86%) Strand = Plus / Minus Query: 184 gcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgcat 243 ||||||||||||||| || |||||||| ||||||||||||| ||||||||||||| ||| Sbjct: 890 gcactcggcggggaagccgttggggaagcgccagccgtcggtgcagtagtcgtaggacat 831 Query: 244 gtagttcctcctggcccagtcgagggtgccg 274 ||| || ||| ||||||| ||| ||||||| Sbjct: 830 gtacttgctctcggcccaggcgacggtgccg 800
>gb|AY589585.1| Triticum aestivum endotransglucosylase/hydrolase XTH1 mRNA, complete cds Length = 958 Score = 85.7 bits (43), Expect = 9e-14 Identities = 79/91 (86%) Strand = Plus / Minus Query: 184 gcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgcat 243 ||||||||||||||| || |||||||| ||||||||||||| ||||||||||||| ||| Sbjct: 890 gcactcggcggggaagccgttggggaagcgccagccgtcggtgcagtagtcgtaggacat 831 Query: 244 gtagttcctcctggcccagtcgagggtgccg 274 ||| || ||| ||||||| ||| ||||||| Sbjct: 830 gtacttgctctcggcccaggcgacggtgccg 800
>emb|AJ295944.1|FPR295944 Festuca pratensis mRNA for Xet2 protein Length = 1189 Score = 77.8 bits (39), Expect = 2e-11 Identities = 45/47 (95%) Strand = Plus / Minus Query: 192 cggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 238 ||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct: 886 cggggaatcccttggggaaccgccagccgtcggcgcagtagttgtag 840
>gb|AY589588.1| Triticum aestivum endotransglucosylase/hydrolase XTH4 mRNA, complete cds Length = 1100 Score = 75.8 bits (38), Expect = 9e-11 Identities = 50/54 (92%) Strand = Plus / Minus Query: 185 cactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 238 |||||| ||||||| ||||||||||||| |||||||||||||||||||| |||| Sbjct: 891 cactcgccggggaatcccttggggaacctccagccgtcggcgcagtagttgtag 838
>emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotransglycosylase-like protein Length = 1110 Score = 69.9 bits (35), Expect = 5e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 184 gcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 238 ||||||| ||||||| ||||||||||| ||||| |||||||||||||||| |||| Sbjct: 883 gcactcgccggggaagcccttggggaagcgccatccgtcggcgcagtagttgtag 829
>emb|AJ875021.1| Zea mays mRNA for xyloglucan endo-transglycosylase/hydrolase (xth1 gene), cultivated variety W64A Length = 1225 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 200 cccttggggaaccgccagccgtcggcgcagtagtcgtagtgcatgtagtt 249 |||| ||||||||||||||||||| ||||||||| |||| |||||||||| Sbjct: 911 ccctgggggaaccgccagccgtcgtcgcagtagttgtagcgcatgtagtt 862
>ref|XM_473788.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 822 Score = 50.1 bits (25), Expect = 0.005 Identities = 49/57 (85%) Strand = Plus / Minus Query: 181 ggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgta 237 ||||||||||| ||||| |||| ||||||||| || |||||||||||||||||| Sbjct: 813 ggagcactcgggcgggaagccctgcgggaaccgcttgctgtcggcgcagtagtcgta 757
>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence Length = 166804 Score = 50.1 bits (25), Expect = 0.005 Identities = 49/57 (85%) Strand = Plus / Plus Query: 181 ggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgta 237 ||||||||||| ||||| |||| ||||||||| || |||||||||||||||||| Sbjct: 149764 ggagcactcgggcgggaagccctgcgggaaccgcttgctgtcggcgcagtagtcgta 149820
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 50.1 bits (25), Expect = 0.005 Identities = 49/57 (85%) Strand = Plus / Plus Query: 181 ggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgta 237 ||||||||||| ||||| |||| ||||||||| || |||||||||||||||||| Sbjct: 30516387 ggagcactcgggcgggaagccctgcgggaaccgcttgctgtcggcgcagtagtcgta 30516443
>dbj|AK070734.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062B10, full insert sequence Length = 1109 Score = 50.1 bits (25), Expect = 0.005 Identities = 49/57 (85%) Strand = Plus / Minus Query: 181 ggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgta 237 ||||||||||| ||||| |||| ||||||||| || |||||||||||||||||| Sbjct: 903 ggagcactcgggcgggaagccctgcgggaaccgcttgctgtcggcgcagtagtcgta 847
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 262 gtcgagggtgccgcgctcggcggcgctg 289 ||||| |||||||||||||||||||||| Sbjct: 1784991 gtcgatggtgccgcgctcggcggcgctg 1784964
>gb|DQ157772.1| Mycobacterium avium subsp. paratuberculosis putative thiolperoxidase gene, complete cds Length = 495 Score = 46.1 bits (23), Expect = 0.078 Identities = 23/23 (100%) Strand = Plus / Plus Query: 330 cgagcgggcggccggcgccggcg 352 ||||||||||||||||||||||| Sbjct: 204 cgagcgggcggccggcgccggcg 226
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.078 Identities = 29/31 (93%) Strand = Plus / Minus Query: 220 gtcggcgcagtagtcgtagtgcatgtagttc 250 ||||||||||||||||||| |||||||||| Sbjct: 28755537 gtcggcgcagtagtcgtaggccatgtagttc 28755507 Score = 46.1 bits (23), Expect = 0.078 Identities = 23/23 (100%) Strand = Plus / Minus Query: 330 cgagcgggcggccggcgccggcg 352 ||||||||||||||||||||||| Sbjct: 2496944 cgagcgggcggccggcgccggcg 2496922 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 cgtcggcgcagtagtcgtag 238 |||||||||||||||||||| Sbjct: 13233015 cgtcggcgcagtagtcgtag 13232996
>gb|AY064405.1| Mycobacterium avium subsp. paratuberculosis 20 kDa protein gene, complete cds Length = 495 Score = 46.1 bits (23), Expect = 0.078 Identities = 23/23 (100%) Strand = Plus / Plus Query: 330 cgagcgggcggccggcgccggcg 352 ||||||||||||||||||||||| Sbjct: 204 cgagcgggcggccggcgccggcg 226
>dbj|AP003767.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0036F10 Length = 149415 Score = 46.1 bits (23), Expect = 0.078 Identities = 23/23 (100%) Strand = Plus / Minus Query: 330 cgagcgggcggccggcgccggcg 352 ||||||||||||||||||||||| Sbjct: 128402 cgagcgggcggccggcgccggcg 128380
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0028E05 Length = 157631 Score = 46.1 bits (23), Expect = 0.078 Identities = 29/31 (93%) Strand = Plus / Minus Query: 220 gtcggcgcagtagtcgtagtgcatgtagttc 250 ||||||||||||||||||| |||||||||| Sbjct: 63312 gtcggcgcagtagtcgtaggccatgtagttc 63282
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0622F03 Length = 170064 Score = 46.1 bits (23), Expect = 0.078 Identities = 29/31 (93%) Strand = Plus / Minus Query: 220 gtcggcgcagtagtcgtagtgcatgtagttc 250 ||||||||||||||||||| |||||||||| Sbjct: 156103 gtcggcgcagtagtcgtaggccatgtagttc 156073
>dbj|AK107817.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-133-F09, full insert sequence Length = 569 Score = 46.1 bits (23), Expect = 0.078 Identities = 23/23 (100%) Strand = Plus / Plus Query: 330 cgagcgggcggccggcgccggcg 352 ||||||||||||||||||||||| Sbjct: 251 cgagcgggcggccggcgccggcg 273
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 46.1 bits (23), Expect = 0.078 Identities = 23/23 (100%) Strand = Plus / Plus Query: 330 cgagcgggcggccggcgccggcg 352 ||||||||||||||||||||||| Sbjct: 1806632 cgagcgggcggccggcgccggcg 1806654
>gb|AC147676.10| Canis Familiaris, clone XX-25H12, complete sequence Length = 203436 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 331 gagcgggcggccggcgccggcg 352 |||||||||||||||||||||| Sbjct: 21585 gagcgggcggccggcgccggcg 21564
>ref|XM_853699.1| PREDICTED: Canis familiaris similar to nuclear receptor subfamily 2, group F, member 2, transcript variant 3 (LOC479026), mRNA Length = 2775 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 331 gagcgggcggccggcgccggcg 352 |||||||||||||||||||||| Sbjct: 268 gagcgggcggccggcgccggcg 247
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Plus Query: 331 gagcgggcggccggcgccggcgggca 356 |||||||| ||||||||||||||||| Sbjct: 949066 gagcgggctgccggcgccggcgggca 949091
>gb|BT017812.1| Zea mays clone EL01N0507B07.c mRNA sequence Length = 1156 Score = 42.1 bits (21), Expect = 1.2 Identities = 60/73 (82%) Strand = Plus / Minus Query: 179 cgggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 238 |||| |||||| |||||||||||| ||||| ||||| ||||| ||||||||| ||| Sbjct: 806 cgggcgcactctccggggaacccctgcgggaagcgccacccgtcatcgcagtagttgtac 747 Query: 239 tgcatgtagttcc 251 |||| | |||||| Sbjct: 746 tgcaagcagttcc 734
>emb|CT009637.4| Mouse DNA sequence from clone RP23-131G16 on chromosome 17, complete sequence Length = 222316 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 ggatggatcaatggatggctg 124 ||||||||||||||||||||| Sbjct: 198135 ggatggatcaatggatggctg 198155
>emb|CR391930.9| Zebrafish DNA sequence from clone CH211-154B16 in linkage group 15, complete sequence Length = 175972 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 tcattcacctttatttactat 28 ||||||||||||||||||||| Sbjct: 104519 tcattcacctttatttactat 104539
>gb|AC073761.4| Mus musculus chromosome 17 clone RP23-33K21, complete sequence Length = 206801 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 ggatggatcaatggatggctg 124 ||||||||||||||||||||| Sbjct: 44345 ggatggatcaatggatggctg 44325
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 281 gcggcgctgggccggcgcgtc 301 ||||||||||||||||||||| Sbjct: 3925726 gcggcgctgggccggcgcgtc 3925746
>gb|U72662.2|MEU72662 Methylobacterium extorquens methylotrophy region containing methylotrophic phosphoenolpyruvate carboxylase (ppcA), malyl-CoA lyase (mclA), orf1, orf2, putative ABC transporter subunit A (abcA), putative ABC transporter subunit B (abcB), putative ABC transporter ATP-binding subunit (abcC), methanol dehydrogenase large subunit homolog (mxaF'), cytochrome c (maxG'), mxaJ homolog (mxaJ'), 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase (folA), dihydroneopterin aldolase (folB), dihydroxypteroate synthase (folC), orf3, orf4, and PqqE (pqqE) genes, complete cds; and PqqC/D (pqqC/D) gene, partial cds Length = 17877 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 273 cgcgctcggcggcgctgggccggcg 297 |||||||||||||| |||||||||| Sbjct: 7236 cgcgctcggcggcgatgggccggcg 7212
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 263 tcgagggtgccgcgctcggcg 283 ||||||||||||||||||||| Sbjct: 1994160 tcgagggtgccgcgctcggcg 1994140
>gb|AY105107.1| Zea mays PCO140468 mRNA sequence Length = 1297 Score = 42.1 bits (21), Expect = 1.2 Identities = 60/73 (82%) Strand = Plus / Minus Query: 179 cgggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 238 |||| |||||| |||||||||||| ||||| ||||| ||||| ||||||||| ||| Sbjct: 970 cgggcgcactctccggggaacccctgcgggaagcgccacccgtcatcgcagtagttgtac 911 Query: 239 tgcatgtagttcc 251 |||| | |||||| Sbjct: 910 tgcaagcagttcc 898
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 271 gccgcgctcggcggcgctgg 290 |||||||||||||||||||| Sbjct: 2850506 gccgcgctcggcggcgctgg 2850487
>gb|AC136219.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0073E05, complete sequence Length = 178013 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 gccggcgccggcgggcacgc 359 |||||||||||||||||||| Sbjct: 87108 gccggcgccggcgggcacgc 87127
>gb|AY658871.1| Synthetic construct Peudomonas aeruginosa clone FLH042178.01F PA0660 gene, partial cds Length = 969 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 336 ggcggccggcgccggcgggcacgc 359 |||||||||||| ||||||||||| Sbjct: 435 ggcggccggcgcgggcgggcacgc 458
>gb|AY210803.1| Aphonopelma hentzi 5.8S ribosomal RNA gene, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 4401 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 ggaaccgccagccgtcggcg 226 |||||||||||||||||||| Sbjct: 529 ggaaccgccagccgtcggcg 548
>emb|AL031984.13|HS173D1 Human DNA sequence from clone RP1-173D1 on chromosome 1p36.21-36.33 Contains the 5' UTR of the gene for a novel protein (FLJ34970, FLJ20321) and a CpG island, complete sequence Length = 117338 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 309 ggtcggtgccggcggggcatgcga 332 |||| ||||||||||||||||||| Sbjct: 92121 ggtctgtgccggcggggcatgcga 92144
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 tcggcggcgctgggccggcgcgtc 301 ||||||||||||||||||| |||| Sbjct: 62532 tcggcggcgctgggccggcccgtc 62509
>gb|AY666013.1| Triticum aestivum cold acclimation induced protein 2-1 mRNA, complete cds Length = 1243 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 ggcggccggcgccggcgggc 355 |||||||||||||||||||| Sbjct: 989 ggcggccggcgccggcgggc 970
>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence Length = 133625 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 gatggatcaatggatggctg 124 |||||||||||||||||||| Sbjct: 118704 gatggatcaatggatggctg 118723
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 gccggcgccggcgggcacgc 359 |||||||||||||||||||| Sbjct: 18613993 gccggcgccggcgggcacgc 18614012
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 cgggcggccggcgccggcgg 353 |||||||||||||||||||| Sbjct: 5816370 cgggcggccggcgccggcgg 5816351
>gb|AE004501.1| Pseudomonas aeruginosa PAO1, section 62 of 529 of the complete genome Length = 10832 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 336 ggcggccggcgccggcgggcacgc 359 |||||||||||| ||||||||||| Sbjct: 626 ggcggccggcgcgggcgggcacgc 603
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 gggcggccggcgccggcggg 354 |||||||||||||||||||| Sbjct: 4815073 gggcggccggcgccggcggg 4815092 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 ggcggccggcgccggcgggc 355 |||||||||||||||||||| Sbjct: 3595431 ggcggccggcgccggcgggc 3595412
>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0012F14 Length = 168629 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 cgtcggcgcagtagtcgtag 238 |||||||||||||||||||| Sbjct: 150203 cgtcggcgcagtagtcgtag 150184
>emb|AL954662.13| Mouse DNA sequence from clone RP23-348L16 on chromosome 2, complete sequence Length = 132427 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 agaattcattcacctttatt 22 |||||||||||||||||||| Sbjct: 43302 agaattcattcacctttatt 43321
>dbj|AK120230.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043D20, full insert sequence Length = 2915 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 gccggcgccggcgggcacgc 359 |||||||||||||||||||| Sbjct: 925 gccggcgccggcgggcacgc 944
>dbj|AK105254.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-D09, full insert sequence Length = 2245 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 gccggcgccggcgggcacgc 359 |||||||||||||||||||| Sbjct: 880 gccggcgccggcgggcacgc 899
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 278 tcggcggcgctgggccggcgcgtc 301 |||||||||| ||||||||||||| Sbjct: 131365 tcggcggcgcggggccggcgcgtc 131388
>dbj|AK063497.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-D06, full insert sequence Length = 1439 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 cgtcggcgcagtagtcgtag 238 |||||||||||||||||||| Sbjct: 1231 cgtcggcgcagtagtcgtag 1212 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,590,217 Number of Sequences: 3902068 Number of extensions: 2590217 Number of successful extensions: 64025 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62020 Number of HSP's gapped (non-prelim): 2005 length of query: 362 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 340 effective length of database: 17,147,199,772 effective search space: 5830047922480 effective search space used: 5830047922480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
