ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart52d03 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X62438.1|HVPERO H.vulgare mRNA for peroxidase Length = 740 Score = 626 bits (316), Expect = e-176 Identities = 339/344 (98%), Gaps = 2/344 (0%) Strand = Plus / Minus Query: 3 tgagaaaataaagtggatccagtcaaactttacgatctctctcgcacacacaacggatgc 62 ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct: 715 tgagaaaataaagtggatccagtcaaactttacgacctctctcgcacacacaacagatgc 656 Query: 63 atatgttttgacctctcatcttattggctagacatcacacttccacgattcaaagtttaa 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 655 atatgttttgacctctcatcttattggctagacatcacacttccacgattcaaagtttaa 596 Query: 123 aacacatagactacttaacggccactcacacagtcacacagtactactgcgttacaccga 182 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 595 aacacatagactacttaacggccactcacacagtcacacagtactactacgttacaccga 536 Query: 183 ttggttatatatctctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctc 242 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 535 ttggttatatatctctcacatgtcagcggcgatcccctcgt-gccggcgacggcggtctc 477 Query: 243 gatgtcctggacacgcctgttggggacggcgcagttgttccggatctcgcccttggtgcc 302 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 476 gatgtcct-gacacgcctgttggggacggcgcagttgttccggatctcgcccttggtgcc 418 Query: 303 ggtgagaatgtccatgttgctcatcttggtcatggacctcgcga 346 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 417 ggtgagaatgtccatgttgctcatcttggtcatggacctcgcga 374
>emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related peroxidase Length = 1245 Score = 539 bits (272), Expect = e-150 Identities = 275/276 (99%) Strand = Plus / Minus Query: 71 tgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1245 tgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 1186 Query: 131 gactacttaacggccactcacacagtcacacagtactactgcgttacaccgattggttat 190 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1185 gactacttaacggccactcacacagtcacacagtactactacgttacaccgattggttat 1126 Query: 191 atatctctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcct 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1125 atatctctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcct 1066 Query: 251 ggacacgcctgttggggacggcgcagttgttccggatctcgcccttggtgccggtgagaa 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1065 ggacacgcctgttggggacggcgcagttgttccggatctcgcccttggtgccggtgagaa 1006 Query: 311 tgtccatgttgctcatcttggtcatggacctcgcga 346 |||||||||||||||||||||||||||||||||||| Sbjct: 1005 tgtccatgttgctcatcttggtcatggacctcgcga 970
>emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor (prx gene), cultivar Cheyenne Length = 1226 Score = 216 bits (109), Expect = 4e-53 Identities = 136/145 (93%) Strand = Plus / Minus Query: 196 tctcacatgtcagcggcgatcccctcgtcgccggcgacggcggtctcgatgtcctggaca 255 ||||||||||| |||||||||||||||||||||| | |||||||||||| ||||||||| Sbjct: 1107 tctcacatgtcggcggcgatcccctcgtcgccggtggtggcggtctcgatatcctggaca 1048 Query: 256 cgcctgttggggacggcgcagttgttccggatctcgcccttggtgccggtgagaatgtcc 315 |||||||||||| ||||||||||||||||||||||||||||| |||||||||| | |||| Sbjct: 1047 cgcctgttgggggcggcgcagttgttccggatctcgcccttgttgccggtgaggaggtcc 988 Query: 316 atgttgctcatcttggtcatggacc 340 ||||||||||||||||||||||||| Sbjct: 987 atgttgctcatcttggtcatggacc 963
>gb|AY857763.1| Triticum monococcum peroxidase 9 (POX9) mRNA, partial cds Length = 760 Score = 119 bits (60), Expect = 6e-24 Identities = 87/96 (90%) Strand = Plus / Minus Query: 234 ggcggtctcgatgtcctggacacgcctgttggggacggcgcagttgttccggatctcgcc 293 ||||||||||||| ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct: 587 ggcggtctcgatgcccttgacacggctgttggggacggcgcagttgaaccggatctcgcc 528 Query: 294 cttggtgccggtgagaatgtccatgttgctcatctt 329 || | |||||||||| | |||||||||||||||||| Sbjct: 527 ctggctgccggtgagcaagtccatgttgctcatctt 492
>gb|AY857764.1| Triticum monococcum peroxidase 10 (POX10) mRNA, partial cds Length = 1308 Score = 95.6 bits (48), Expect = 9e-17 Identities = 84/96 (87%) Strand = Plus / Minus Query: 234 ggcggtctcgatgtcctggacacgcctgttggggacggcgcagttgttccggatctcgcc 293 ||||||||||||| | | ||| ||||| ||||||||||||||||| | ||||||||| || Sbjct: 1023 ggcggtctcgatgacatcgacgcgcctattggggacggcgcagttctgccggatctcacc 964 Query: 294 cttggtgccggtgagaatgtccatgttgctcatctt 329 || |||||| ||||| | |||||||||||||||||| Sbjct: 963 ctgggtgccagtgagcaagtccatgttgctcatctt 928
>ref|XM_474444.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1041 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Minus Query: 269 cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 328 ||||||||||||| ||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 970 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 911 Query: 329 tg 330 || Sbjct: 910 tg 909
>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome Length = 124321 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Minus Query: 269 cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 328 ||||||||||||| ||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 90573 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 90514 Query: 329 tg 330 || Sbjct: 90513 tg 90512
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Plus Query: 269 cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 328 ||||||||||||| ||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 35222888 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 35222947 Query: 329 tg 330 || Sbjct: 35222948 tg 35222949
>dbj|AK104833.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-B05, full insert sequence Length = 1298 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Minus Query: 269 cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 328 ||||||||||||| ||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 1026 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 967 Query: 329 tg 330 || Sbjct: 966 tg 965
>dbj|AK102307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033090B01, full insert sequence Length = 1487 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Minus Query: 269 cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 328 ||||||||||||| ||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 1177 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 1118 Query: 329 tg 330 || Sbjct: 1117 tg 1116
>dbj|AK060789.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-D09, full insert sequence Length = 1349 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Minus Query: 269 cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 328 ||||||||||||| ||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 1028 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 969 Query: 329 tg 330 || Sbjct: 968 tg 967
>tpe|BN000588.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx59 gene for class III peroxidase 59 precursor, exons 1-3 Length = 1290 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Minus Query: 269 cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 328 ||||||||||||| ||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 1219 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 1160 Query: 329 tg 330 || Sbjct: 1159 tg 1158
>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete sequence Length = 82895 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Plus Query: 269 cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 328 ||||||||||||| ||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 66474 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 66533 Query: 329 tg 330 || Sbjct: 66534 tg 66535
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24, complete sequence Length = 173770 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Plus Query: 269 cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 328 ||||||||||||| ||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 18733 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 18792 Query: 329 tg 330 || Sbjct: 18793 tg 18794
>gb|AF019743.1|AF019743 Oryza sativa cationic peroxidase (OsCPX1) mRNA, complete cds Length = 1333 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Minus Query: 269 cggcgcagttgttccggatctcgcccttggtgccggtgagaatgtccatgttgctcatct 328 ||||||||||||| ||||||||||| | |||||||||| | |||||| | |||||||| Sbjct: 1015 cggcgcagttgttgcggatctcgccggcgttgccggtgaggacgtccatctggctcatct 956 Query: 329 tg 330 || Sbjct: 955 tg 954
>ref|NM_125807.3| Arabidopsis thaliana peroxidase AT5G64110 mRNA, complete cds Length = 1307 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Minus Query: 322 ctcatcttggtcatggacctcgcga 346 ||||||||||||||||||||||||| Sbjct: 1013 ctcatcttggtcatggacctcgcga 989
>gb|AY065173.1| Arabidopsis thaliana peroxidase ATP3a homolog (At5g64110; MHJ24.9) mRNA, complete cds Length = 1177 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Minus Query: 322 ctcatcttggtcatggacctcgcga 346 ||||||||||||||||||||||||| Sbjct: 1011 ctcatcttggtcatggacctcgcga 987
>emb|BX830987.1|CNS0A0RL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS46ZC04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1264 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Minus Query: 322 ctcatcttggtcatggacctcgcga 346 ||||||||||||||||||||||||| Sbjct: 970 ctcatcttggtcatggacctcgcga 946
>gb|BT003353.1| Arabidopsis thaliana peroxidase ATP3a homolog (At5g64110) mRNA, complete cds Length = 1087 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Minus Query: 322 ctcatcttggtcatggacctcgcga 346 ||||||||||||||||||||||||| Sbjct: 929 ctcatcttggtcatggacctcgcga 905
>gb|AY086554.1| Arabidopsis thaliana clone 2577 mRNA, complete sequence Length = 1158 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Minus Query: 322 ctcatcttggtcatggacctcgcga 346 ||||||||||||||||||||||||| Sbjct: 1013 ctcatcttggtcatggacctcgcga 989
>dbj|AB008266.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHJ24 Length = 48622 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Plus Query: 322 ctcatcttggtcatggacctcgcga 346 ||||||||||||||||||||||||| Sbjct: 28045 ctcatcttggtcatggacctcgcga 28069
>gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, complete sequence Length = 253910 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Plus Query: 145 cactcacacagtcacacagtactact 170 |||||| ||||||||||||||||||| Sbjct: 35412 cactcatacagtcacacagtactact 35437
>gb|AY389595.1| Hyacinthus orientalis secretory peroxidase mRNA, partial cds Length = 578 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 280 ttccggatctcgcccttggtgccggtgag 308 ||||||||||||||||||| |||||||| Sbjct: 266 ttccggatctcgcccttggatccggtgag 238
>ref|NM_183542.2| Oryza sativa (japonica cultivar-group), mRNA Length = 653 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tcgtcgccggcgacggcggt 239 |||||||||||||||||||| Sbjct: 440 tcgtcgccggcgacggcggt 459
>ref|XM_478764.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1472 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 cgatcccctcgtcgccggcg 231 |||||||||||||||||||| Sbjct: 48 cgatcccctcgtcgccggcg 67
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 215 tcccctcgtcgccggcgacggcgg 238 ||||||||||||||||| |||||| Sbjct: 14162748 tcccctcgtcgccggcgccggcgg 14162771
>emb|BX927308.14| Zebrafish DNA sequence from clone DKEY-16M19 in linkage group 22, complete sequence Length = 220546 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 caaactttacgatctctctcgcac 49 |||||||||||||||||| ||||| Sbjct: 163832 caaactttacgatctctcacgcac 163855
>gb|AC125784.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0012F18, from chromosome 3, complete sequence Length = 122903 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 215 tcccctcgtcgccggcgacggcgg 238 ||||||||||||||||| |||||| Sbjct: 37039 tcccctcgtcgccggcgccggcgg 37062
>emb|CR293514.9| Zebrafish DNA sequence from clone CH211-153C2 in linkage group 22, complete sequence Length = 185892 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 caaactttacgatctctctcgcac 49 |||||||||||||||||| ||||| Sbjct: 105158 caaactttacgatctctcacgcac 105181
>gb|AC161263.2| Mus musculus BAC clone RP23-296K6 from chromosome 8, complete sequence Length = 199032 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 gttatatatctctcacatgtcagc 209 ||||||||||| |||||||||||| Sbjct: 173426 gttatatatctatcacatgtcagc 173449
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 4.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 273 gcagttgttccggatctcgcccttggtgccggtgag 308 |||||| |||||||||||||||| | ||||||||| Sbjct: 20926200 gcagttcttccggatctcgccctggtcgccggtgag 20926235
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 cgatcccctcgtcgccggcg 231 |||||||||||||||||||| Sbjct: 22867465 cgatcccctcgtcgccggcg 22867484
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 215 tcccctcgtcgccggcgacggcgg 238 ||||||||||||||||| |||||| Sbjct: 14157723 tcccctcgtcgccggcgccggcgg 14157746
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tcgtcgccggcgacggcggt 239 |||||||||||||||||||| Sbjct: 631577 tcgtcgccggcgacggcggt 631596
>gb|AC092596.3| Homo sapiens BAC clone RP11-100J5 from 4, complete sequence Length = 175644 Score = 40.1 bits (20), Expect = 4.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 59 atgcatatgttttgacctctcatcttattggc 90 |||||||||||| ||||| ||||||| ||||| Sbjct: 156758 atgcatatgtttagacctgtcatctttttggc 156727
>dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0032H19 Length = 126434 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tcgtcgccggcgacggcggt 239 |||||||||||||||||||| Sbjct: 15321 tcgtcgccggcgacggcggt 15340
>dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439B06 Length = 135991 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tcgtcgccggcgacggcggt 239 |||||||||||||||||||| Sbjct: 106182 tcgtcgccggcgacggcggt 106201
>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1019_E02 Length = 121607 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 cgatcccctcgtcgccggcg 231 |||||||||||||||||||| Sbjct: 60732 cgatcccctcgtcgccggcg 60751
>dbj|AK109551.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-A03, full insert sequence Length = 1325 Score = 40.1 bits (20), Expect = 4.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 273 gcagttgttccggatctcgcccttggtgccggtgag 308 |||||| |||||||||||||||| | ||||||||| Sbjct: 1110 gcagttcttccggatctcgccctggtcgccggtgag 1075
>dbj|AK106380.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-D10, full insert sequence Length = 1471 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 cgatcccctcgtcgccggcg 231 |||||||||||||||||||| Sbjct: 47 cgatcccctcgtcgccggcg 66
>dbj|AK103623.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133N12, full insert sequence Length = 654 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 tcgtcgccggcgacggcggt 239 |||||||||||||||||||| Sbjct: 440 tcgtcgccggcgacggcggt 459
>tpe|BN000667.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx138 gene for class III peroxidase 138 precursor, exons 1-4 Length = 9140 Score = 40.1 bits (20), Expect = 4.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 273 gcagttgttccggatctcgcccttggtgccggtgag 308 |||||| |||||||||||||||| | ||||||||| Sbjct: 9119 gcagttcttccggatctcgccctggtcgccggtgag 9084
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 4.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 273 gcagttgttccggatctcgcccttggtgccggtgag 308 |||||| |||||||||||||||| | ||||||||| Sbjct: 20852414 gcagttcttccggatctcgccctggtcgccggtgag 20852449
>emb|AL713943.3|CNS07YPC Oryza sativa chromosome 12, . BAC OSJNBa0030G16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 182172 Score = 40.1 bits (20), Expect = 4.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 273 gcagttgttccggatctcgcccttggtgccggtgag 308 |||||| |||||||||||||||| | ||||||||| Sbjct: 11690 gcagttcttccggatctcgccctggtcgccggtgag 11725
>emb|AL731880.3|CNS08C8J Oryza sativa chromosome 12, . BAC OSJNBa0035E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 107819 Score = 40.1 bits (20), Expect = 4.6 Identities = 32/36 (88%) Strand = Plus / Minus Query: 273 gcagttgttccggatctcgcccttggtgccggtgag 308 |||||| |||||||||||||||| | ||||||||| Sbjct: 32795 gcagttcttccggatctcgccctggtcgccggtgag 32760
>gb|AC144858.3| Mus musculus BAC clone RP24-144F3 from 8, complete sequence Length = 185158 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 gttatatatctctcacatgtcagc 209 ||||||||||| |||||||||||| Sbjct: 41286 gttatatatctatcacatgtcagc 41309 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,715,608 Number of Sequences: 3902068 Number of extensions: 2715608 Number of successful extensions: 59855 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59436 Number of HSP's gapped (non-prelim): 417 length of query: 346 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 324 effective length of database: 17,147,199,772 effective search space: 5555692726128 effective search space used: 5555692726128 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
