ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart52c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATL2D_ARATH (Q9SL78) Putative RING-H2 finger protein ATL2D precu... 37 0.015
2ATL4J_ARATH (Q5XF85) RING-H2 finger protein ATL4J precursor 36 0.033
3DX26B_HUMAN (Q5JSJ4) Protein DDX26B 29 5.3
4MYOF_HUMAN (Q9NZM1) Myoferlin (Fer-1-like protein 3) 28 9.0

>ATL2D_ARATH (Q9SL78) Putative RING-H2 finger protein ATL2D precursor (RING-H2|
           finger protein ATL12)
          Length = 390

 Score = 37.4 bits (85), Expect = 0.015
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = -1

Query: 170 WVPIARRTARWFAARSKEEDVN 105
           W+PIARRTA+WF  R K  D+N
Sbjct: 361 WLPIARRTAQWFVNREKSNDLN 382



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>ATL4J_ARATH (Q5XF85) RING-H2 finger protein ATL4J precursor|
          Length = 432

 Score = 36.2 bits (82), Expect = 0.033
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -1

Query: 170 WVPIARRTARWFAARSKEEDVN 105
           W+PIAR+TA+WFA R K   +N
Sbjct: 403 WLPIARKTAQWFANREKRSQIN 424



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>DX26B_HUMAN (Q5JSJ4) Protein DDX26B|
          Length = 861

 Score = 28.9 bits (63), Expect = 5.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 404 VGEEPPEERGIRDNDHDGGDXXXXXXXERKRLLQ 303
           VG++PP+E GI+  +H GG          ++LL+
Sbjct: 441 VGKKPPQEIGIKVKNHSGGGMSLTHNKNFRKLLK 474



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>MYOF_HUMAN (Q9NZM1) Myoferlin (Fer-1-like protein 3)|
          Length = 2061

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 413 IIFVGEEPPEERGIRDNDHD 354
           ++  G+EPP ER  RDND D
Sbjct: 322 VLGTGDEPPPERRDRDNDSD 341


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.126    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,530,610
Number of Sequences: 219361
Number of extensions: 357032
Number of successful extensions: 1239
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
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