>gb|U80806.1|HPU80806 Hydrogenophaga pseudoflava carbon monoxide dehydrogenase middle
            subunit CutM, small subunit CutS and large subunit CutL
            genes, complete cds
          Length = 4394

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 150  cggccatggcggtcttgtagtcg 172
            |||||||||||||||||||||||
Sbjct: 1332 cggccatggcggtcttgtagtcg 1310

>emb|X77931.1|PTC2CUTAC P.thermocarboxydovorans (C2) cut A, cut B and cut C genes
          Length = 4723

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 143  atctcgacggccatggcggtcttgta 168
            |||||| |||||||||||||||||||
Sbjct: 1032 atctcggcggccatggcggtcttgta 1007

>ref|XM_478780.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1843

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 169 gtcgcggaggccatggaggtg 189
           |||||||||||||||||||||
Sbjct: 192 gtcgcggaggccatggaggtg 212

>ref|XM_752716.1| Ustilago maydis 521 hypothetical protein (UM01662.1) partial mRNA
          Length = 5868

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 319  ctgctcgggcgtcatctcgaccacc 343
            |||| ||||||||||||||||||||
Sbjct: 4920 ctgcccgggcgtcatctcgaccacc 4896

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 169      gtcgcggaggccatggaggtg 189
                |||||||||||||||||||||
Sbjct: 23031365 gtcgcggaggccatggaggtg 23031345

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 68       agagcaattctctcttcaaat 88
                |||||||||||||||||||||
Sbjct: 28935522 agagcaattctctcttcaaat 28935502



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 191     tccgtcacctcctccatggc 210
               ||||||||||||||||||||
Sbjct: 5742316 tccgtcacctcctccatggc 5742335

>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1121_A05
          Length = 172668

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 169    gtcgcggaggccatggaggtg 189
              |||||||||||||||||||||
Sbjct: 106579 gtcgcggaggccatggaggtg 106559

>dbj|AP004052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1218_D07
          Length = 114511

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 68    agagcaattctctcttcaaat 88
             |||||||||||||||||||||
Sbjct: 18580 agagcaattctctcttcaaat 18560

>dbj|AK067178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098E20, full
           insert sequence
          Length = 1842

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 169 gtcgcggaggccatggaggtg 189
           |||||||||||||||||||||
Sbjct: 191 gtcgcggaggccatggaggtg 211

>gb|AC101970.11| Mus musculus chromosome 1, clone RP24-267G24, complete sequence
          Length = 167090

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     catgtgcctttccaccaaga 112
              ||||||||||||||||||||
Sbjct: 139360 catgtgcctttccaccaaga 139341

>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 322    ctcgggcgtcatctcgacca 341
              ||||||||||||||||||||
Sbjct: 318640 ctcgggcgtcatctcgacca 318621

>gb|AC158931.4| Mus musculus chromosome 1, clone RP23-3H19, complete sequence
          Length = 212994

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    catgtgcctttccaccaaga 112
             ||||||||||||||||||||
Sbjct: 31527 catgtgcctttccaccaaga 31508

>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 305     tcgacgatctgattctgctc 324
               ||||||||||||||||||||
Sbjct: 4713885 tcgacgatctgattctgctc 4713866

>dbj|AP004045.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1135_F06
          Length = 102230

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   tccgtcacctcctccatggc 210
             ||||||||||||||||||||
Sbjct: 31830 tccgtcacctcctccatggc 31849


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,732,551
Number of Sequences: 3902068
Number of extensions: 2732551
Number of successful extensions: 46911
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46805
Number of HSP's gapped (non-prelim): 106
length of query: 390
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 368
effective length of database: 17,147,199,772
effective search space: 6310169516096
effective search space used: 6310169516096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)