Clone Name | rbart52b05 |
---|---|
Clone Library Name | barley_pub |
>SPE1_DIACA (Q96412) Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC)| Length = 725 Score = 36.2 bits (82), Expect = 0.020 Identities = 25/89 (28%), Positives = 47/89 (52%) Frame = -3 Query: 305 EVYGKVQSVPGRIMHVVRGVWCSC*RYSGRLRCKCVCCLH*VMYEISWLGLIQFGLLDWI 126 EV G+ +S+ M RG + SC YSG L+ +CV +++ LG+ Q +D + Sbjct: 438 EVKGEYRSLTAAAM---RGEYESCLMYSGMLKQRCV-----ELFKDGCLGMEQLAAVDGL 489 Query: 125 LHTYTHSFSVLLGVCTLRFS*SSTIYTNV 39 + + V GVCT ++ + +++T++ Sbjct: 490 CELVSKALGVADGVCT--YNVNLSVFTSI 516
>YJBC_SCHPO (O74949) Hypothetical protein C553.12c in chromosome III| Length = 521 Score = 33.5 bits (75), Expect = 0.13 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = -3 Query: 182 VMYEISWLGLIQFGLL--DWILHTYTHSFSVLLGVCTLRFS*SSTIYTNVLY 33 +MY SW G + L WIL+T THS++ L+ V L F + +Y LY Sbjct: 299 IMYVYSWTGTVSLCNLVSSWILNTKTHSYA-LVTVFKLYFELTLQVYVRNLY 349
>OPSB_ASTFA (P51472) Blue-sensitive opsin (Blue cone photoreceptor pigment)| Length = 355 Score = 32.7 bits (73), Expect = 0.22 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = -3 Query: 170 ISWLGLIQFGLLDWILHTYTHSFSVLLGVCTLRFS*SSTIYTNVLYHFI 24 + WL F L W++ SF + LG FS +ST+Y V+Y F+ Sbjct: 268 VCWLPYASFAL--WVVFNRGQSFDLRLGTIPSCFSKASTVYNPVIYVFM 314
>MAL11_YEAST (P53048) General alpha-glucoside permease (Maltose permease MAL11)| (Maltose transport protein MAL11) Length = 616 Score = 32.0 bits (71), Expect = 0.37 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 8/65 (12%) Frame = -2 Query: 234 LTLQW*ITV*MCLLSS-------LGYV*DFLVGPYT-IRIIGLDSAYIYTLIFCTSGSMY 79 +T QW I + MC+L Y+ +F+ YT I +GL +AYI+ L +C S +M Sbjct: 151 ITSQWQIGLNMCVLCGEMIGLQITTYMVEFMGNRYTMITALGLLTAYIFILYYCKSLAMI 210 Query: 78 SQIQL 64 + Q+ Sbjct: 211 AVGQI 215
>PRMA_HELHP (Q7VHY7) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11| Mtase) Length = 317 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = -1 Query: 148 NSDYWIGFCIHIHTHFLYFWEYVLSDSVKVVPYTQMY 38 N+ +GFC HI F Y W DS++ V + Y Sbjct: 101 NTQDSVGFCYHIEEKFNYDWIKAYQDSIEPVQCGRFY 137
>CD68_MOUSE (P31996) Macrosialin precursor (CD68 antigen)| Length = 326 Score = 28.9 bits (63), Expect = 3.1 Identities = 20/73 (27%), Positives = 28/73 (38%) Frame = +2 Query: 155 GPTRKSHT*PSEDSKHIYTVIYHCNVNKNTTLHELHA*SALERTEPSRKPPAPSSLTVSA 334 GPT +H P+ + H I H V+ T S+ P PP+PS + A Sbjct: 68 GPTTVTHN-PATTTSHGNATISHATVSPTTNGTATSPRSSTVGPHPGPPPPSPSPRSKGA 126 Query: 335 HASAELLNCKCPC 373 + N PC Sbjct: 127 LGNYTWANGSQPC 139
>TESK1_HUMAN (Q15569) Dual specificity testis-specific protein kinase 1 (EC| 2.7.12.1) (Testicular protein kinase 1) Length = 626 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = +2 Query: 239 NTTLHELHA*SALERTEPSRKPPAP 313 N H L +ALERTEPS P AP Sbjct: 535 NRAQHSLPRAAALERTEPSPPPSAP 559
>TESK1_RAT (Q63572) Dual specificity testis-specific protein kinase 1 (EC| 2.7.12.1) (Testicular protein kinase 1) Length = 628 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = +2 Query: 239 NTTLHELHA*SALERTEPSRKPPAP 313 N H L +ALERTEPS P AP Sbjct: 537 NRAQHSLPRAAALERTEPSPPPSAP 561
>CLD12_PONPY (Q5R9K1) Claudin-12| Length = 244 Score = 28.5 bits (62), Expect = 4.1 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 8/72 (11%) Frame = -3 Query: 260 VVRGVWCSC*RYSGRLRCKCVCCLH*VMYEISW--------LGLIQFGLLDWILHTYTHS 105 V G+W C RY G C +MY+ +W L ++QF L +L Sbjct: 50 VYTGLWVKCARYDGSSDC--------LMYDTTWYSSVDQLDLRVLQFALPLSMLIAMGAL 101 Query: 104 FSVLLGVCTLRF 69 L+G+C F Sbjct: 102 LLCLIGMCNTAF 113
>CLD12_HUMAN (P56749) Claudin-12| Length = 244 Score = 28.5 bits (62), Expect = 4.1 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 8/72 (11%) Frame = -3 Query: 260 VVRGVWCSC*RYSGRLRCKCVCCLH*VMYEISW--------LGLIQFGLLDWILHTYTHS 105 V G+W C RY G C +MY+ +W L ++QF L +L Sbjct: 50 VYTGLWVKCARYDGSSDC--------LMYDTTWYSSVDQLDLRVLQFALPLSMLIAMGAL 101 Query: 104 FSVLLGVCTLRF 69 L+G+C F Sbjct: 102 LLCLIGMCNTAF 113
>I13R2_CANFA (Q95LF0) Interleukin-13 receptor alpha-2 chain precursor (CD213a2| antigen) Length = 386 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Frame = -2 Query: 138 IGLDSAYIYTLIFCTS-GSMYSQIQLK 61 I LD ++YTL+ CT+ GSM S ++K Sbjct: 4 IHLDVGFLYTLLVCTAFGSMLSNAEIK 30
>SPEE_SHEON (Q8EAX8) Probable spermidine synthase (EC 2.5.1.16) (Putrescine| aminopropyltransferase) (SPDSY) Length = 574 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -2 Query: 204 MCLLSSLGYV*DFLVGPYTIRIIGLDSAYIYTLI 103 M +L+ G + ++L+ Y RI+G A IYT+I Sbjct: 28 MAVLAGCGLIYEYLLSHYAGRILGALEAAIYTMI 61
>HIS6_CHLCH (Q3ATG0) Imidazole glycerol phosphate synthase subunit hisF (EC| 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF) Length = 251 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Frame = -2 Query: 378 HRHGHLQLRS-SALAWALTVKELGAG 304 H H Q+ AL WAL V+ELGAG Sbjct: 141 HTHSGKQITQYEALEWALKVQELGAG 166
>CLD12_MOUSE (Q9ET43) Claudin-12| Length = 244 Score = 27.7 bits (60), Expect = 7.0 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 8/73 (10%) Frame = -3 Query: 260 VVRGVWCSC*RYSGRLRCKCVCCLH*VMYEISW--------LGLIQFGLLDWILHTYTHS 105 + G+W C RY G C +MY+ +W L ++QF L I+ Sbjct: 50 IYTGLWVKCARYDGSSDC--------LMYDRTWYLSVDQLDLRVLQFALPLSIVIAMGAL 101 Query: 104 FSVLLGVCTLRFS 66 L+G+C F+ Sbjct: 102 LLCLIGMCNTAFN 114
>HIS6_PELLD (Q3B2Q6) Imidazole glycerol phosphate synthase subunit hisF (EC| 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF) Length = 251 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -2 Query: 384 LHHRHGHLQLRSSALAWALTVKELGAG 304 +H G AL WAL V+ELGAG Sbjct: 140 VHTHSGKQPTAYEALEWALKVQELGAG 166
>YAMY_BACAD (P32819) Hypothetical 39.9 kDa protein in amylase 3'region| Length = 346 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%) Frame = -3 Query: 182 VMYEISWLGLIQFGLLDWI--LHTYTHSFSVLL 90 +++ WL +FG L+W+ + TY F +LL Sbjct: 309 LIFSAMWLKYCKFGPLEWVWRMMTYNRKFPILL 341 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,928,535 Number of Sequences: 219361 Number of extensions: 1207342 Number of successful extensions: 3030 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2992 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3029 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)