ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart52b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPE1_DIACA (Q96412) Arginine decarboxylase (EC 4.1.1.19) (ARGDC)... 36 0.020
2YJBC_SCHPO (O74949) Hypothetical protein C553.12c in chromosome III 33 0.13
3OPSB_ASTFA (P51472) Blue-sensitive opsin (Blue cone photorecepto... 33 0.22
4MAL11_YEAST (P53048) General alpha-glucoside permease (Maltose p... 32 0.37
5PRMA_HELHP (Q7VHY7) Ribosomal protein L11 methyltransferase (EC ... 30 1.8
6CD68_MOUSE (P31996) Macrosialin precursor (CD68 antigen) 29 3.1
7TESK1_HUMAN (Q15569) Dual specificity testis-specific protein ki... 28 4.1
8TESK1_RAT (Q63572) Dual specificity testis-specific protein kina... 28 4.1
9CLD12_PONPY (Q5R9K1) Claudin-12 28 4.1
10CLD12_HUMAN (P56749) Claudin-12 28 4.1
11I13R2_CANFA (Q95LF0) Interleukin-13 receptor alpha-2 chain precu... 28 5.4
12SPEE_SHEON (Q8EAX8) Probable spermidine synthase (EC 2.5.1.16) (... 28 5.4
13HIS6_CHLCH (Q3ATG0) Imidazole glycerol phosphate synthase subuni... 28 7.0
14CLD12_MOUSE (Q9ET43) Claudin-12 28 7.0
15HIS6_PELLD (Q3B2Q6) Imidazole glycerol phosphate synthase subuni... 27 9.1
16YAMY_BACAD (P32819) Hypothetical 39.9 kDa protein in amylase 3'r... 27 9.1

>SPE1_DIACA (Q96412) Arginine decarboxylase (EC 4.1.1.19) (ARGDC) (ADC)|
          Length = 725

 Score = 36.2 bits (82), Expect = 0.020
 Identities = 25/89 (28%), Positives = 47/89 (52%)
 Frame = -3

Query: 305 EVYGKVQSVPGRIMHVVRGVWCSC*RYSGRLRCKCVCCLH*VMYEISWLGLIQFGLLDWI 126
           EV G+ +S+    M   RG + SC  YSG L+ +CV      +++   LG+ Q   +D +
Sbjct: 438 EVKGEYRSLTAAAM---RGEYESCLMYSGMLKQRCV-----ELFKDGCLGMEQLAAVDGL 489

Query: 125 LHTYTHSFSVLLGVCTLRFS*SSTIYTNV 39
               + +  V  GVCT  ++ + +++T++
Sbjct: 490 CELVSKALGVADGVCT--YNVNLSVFTSI 516



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>YJBC_SCHPO (O74949) Hypothetical protein C553.12c in chromosome III|
          Length = 521

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -3

Query: 182 VMYEISWLGLIQFGLL--DWILHTYTHSFSVLLGVCTLRFS*SSTIYTNVLY 33
           +MY  SW G +    L   WIL+T THS++ L+ V  L F  +  +Y   LY
Sbjct: 299 IMYVYSWTGTVSLCNLVSSWILNTKTHSYA-LVTVFKLYFELTLQVYVRNLY 349



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>OPSB_ASTFA (P51472) Blue-sensitive opsin (Blue cone photoreceptor pigment)|
          Length = 355

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -3

Query: 170 ISWLGLIQFGLLDWILHTYTHSFSVLLGVCTLRFS*SSTIYTNVLYHFI 24
           + WL    F L  W++     SF + LG     FS +ST+Y  V+Y F+
Sbjct: 268 VCWLPYASFAL--WVVFNRGQSFDLRLGTIPSCFSKASTVYNPVIYVFM 314



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>MAL11_YEAST (P53048) General alpha-glucoside permease (Maltose permease MAL11)|
           (Maltose transport protein MAL11)
          Length = 616

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
 Frame = -2

Query: 234 LTLQW*ITV*MCLLSS-------LGYV*DFLVGPYT-IRIIGLDSAYIYTLIFCTSGSMY 79
           +T QW I + MC+L           Y+ +F+   YT I  +GL +AYI+ L +C S +M 
Sbjct: 151 ITSQWQIGLNMCVLCGEMIGLQITTYMVEFMGNRYTMITALGLLTAYIFILYYCKSLAMI 210

Query: 78  SQIQL 64
           +  Q+
Sbjct: 211 AVGQI 215



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>PRMA_HELHP (Q7VHY7) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 317

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 148 NSDYWIGFCIHIHTHFLYFWEYVLSDSVKVVPYTQMY 38
           N+   +GFC HI   F Y W     DS++ V   + Y
Sbjct: 101 NTQDSVGFCYHIEEKFNYDWIKAYQDSIEPVQCGRFY 137



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>CD68_MOUSE (P31996) Macrosialin precursor (CD68 antigen)|
          Length = 326

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/73 (27%), Positives = 28/73 (38%)
 Frame = +2

Query: 155 GPTRKSHT*PSEDSKHIYTVIYHCNVNKNTTLHELHA*SALERTEPSRKPPAPSSLTVSA 334
           GPT  +H  P+  + H    I H  V+  T        S+     P   PP+PS  +  A
Sbjct: 68  GPTTVTHN-PATTTSHGNATISHATVSPTTNGTATSPRSSTVGPHPGPPPPSPSPRSKGA 126

Query: 335 HASAELLNCKCPC 373
             +    N   PC
Sbjct: 127 LGNYTWANGSQPC 139



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>TESK1_HUMAN (Q15569) Dual specificity testis-specific protein kinase 1 (EC|
           2.7.12.1) (Testicular protein kinase 1)
          Length = 626

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +2

Query: 239 NTTLHELHA*SALERTEPSRKPPAP 313
           N   H L   +ALERTEPS  P AP
Sbjct: 535 NRAQHSLPRAAALERTEPSPPPSAP 559



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>TESK1_RAT (Q63572) Dual specificity testis-specific protein kinase 1 (EC|
           2.7.12.1) (Testicular protein kinase 1)
          Length = 628

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +2

Query: 239 NTTLHELHA*SALERTEPSRKPPAP 313
           N   H L   +ALERTEPS  P AP
Sbjct: 537 NRAQHSLPRAAALERTEPSPPPSAP 561



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>CLD12_PONPY (Q5R9K1) Claudin-12|
          Length = 244

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
 Frame = -3

Query: 260 VVRGVWCSC*RYSGRLRCKCVCCLH*VMYEISW--------LGLIQFGLLDWILHTYTHS 105
           V  G+W  C RY G   C        +MY+ +W        L ++QF L   +L      
Sbjct: 50  VYTGLWVKCARYDGSSDC--------LMYDTTWYSSVDQLDLRVLQFALPLSMLIAMGAL 101

Query: 104 FSVLLGVCTLRF 69
              L+G+C   F
Sbjct: 102 LLCLIGMCNTAF 113



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>CLD12_HUMAN (P56749) Claudin-12|
          Length = 244

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
 Frame = -3

Query: 260 VVRGVWCSC*RYSGRLRCKCVCCLH*VMYEISW--------LGLIQFGLLDWILHTYTHS 105
           V  G+W  C RY G   C        +MY+ +W        L ++QF L   +L      
Sbjct: 50  VYTGLWVKCARYDGSSDC--------LMYDTTWYSSVDQLDLRVLQFALPLSMLIAMGAL 101

Query: 104 FSVLLGVCTLRF 69
              L+G+C   F
Sbjct: 102 LLCLIGMCNTAF 113



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>I13R2_CANFA (Q95LF0) Interleukin-13 receptor alpha-2 chain precursor (CD213a2|
           antigen)
          Length = 386

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -2

Query: 138 IGLDSAYIYTLIFCTS-GSMYSQIQLK 61
           I LD  ++YTL+ CT+ GSM S  ++K
Sbjct: 4   IHLDVGFLYTLLVCTAFGSMLSNAEIK 30



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>SPEE_SHEON (Q8EAX8) Probable spermidine synthase (EC 2.5.1.16) (Putrescine|
           aminopropyltransferase) (SPDSY)
          Length = 574

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 204 MCLLSSLGYV*DFLVGPYTIRIIGLDSAYIYTLI 103
           M +L+  G + ++L+  Y  RI+G   A IYT+I
Sbjct: 28  MAVLAGCGLIYEYLLSHYAGRILGALEAAIYTMI 61



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>HIS6_CHLCH (Q3ATG0) Imidazole glycerol phosphate synthase subunit hisF (EC|
           4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase
           subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit
           hisF)
          Length = 251

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 378 HRHGHLQLRS-SALAWALTVKELGAG 304
           H H   Q+    AL WAL V+ELGAG
Sbjct: 141 HTHSGKQITQYEALEWALKVQELGAG 166



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>CLD12_MOUSE (Q9ET43) Claudin-12|
          Length = 244

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
 Frame = -3

Query: 260 VVRGVWCSC*RYSGRLRCKCVCCLH*VMYEISW--------LGLIQFGLLDWILHTYTHS 105
           +  G+W  C RY G   C        +MY+ +W        L ++QF L   I+      
Sbjct: 50  IYTGLWVKCARYDGSSDC--------LMYDRTWYLSVDQLDLRVLQFALPLSIVIAMGAL 101

Query: 104 FSVLLGVCTLRFS 66
              L+G+C   F+
Sbjct: 102 LLCLIGMCNTAFN 114



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>HIS6_PELLD (Q3B2Q6) Imidazole glycerol phosphate synthase subunit hisF (EC|
           4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase
           subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit
           hisF)
          Length = 251

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 384 LHHRHGHLQLRSSALAWALTVKELGAG 304
           +H   G       AL WAL V+ELGAG
Sbjct: 140 VHTHSGKQPTAYEALEWALKVQELGAG 166



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>YAMY_BACAD (P32819) Hypothetical 39.9 kDa protein in amylase 3'region|
          Length = 346

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 182 VMYEISWLGLIQFGLLDWI--LHTYTHSFSVLL 90
           +++   WL   +FG L+W+  + TY   F +LL
Sbjct: 309 LIFSAMWLKYCKFGPLEWVWRMMTYNRKFPILL 341


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,928,535
Number of Sequences: 219361
Number of extensions: 1207342
Number of successful extensions: 3030
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3029
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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