ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart52b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477988.1| Oryza sativa (japonica cultivar-group), mRNA 56 9e-05
2emb|X85747.1|OS1A1COX O.sativa mRNA for 1-aminocyclopropane-1-ca... 56 9e-05
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
4dbj|AP005256.3| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
5dbj|AK059964.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
6gb|AC125078.2| Mus musculus BAC clone RP23-478C7 from chromosome... 44 0.33
7gb|AC166572.1| Mus musculus BAC clone RP23-346L20 from chromosom... 44 0.33
8gb|CP000284.1| Methylobacillus flagellatus KT, complete genome 44 0.33
9gb|AC127430.4| Homo sapiens chromosome 3 clone CTD-2563A18, comp... 44 0.33
10emb|CT027602.9| Mouse DNA sequence from clone RP24-359G24 on chr... 44 0.33
11gb|AC126937.3| Mus musculus BAC clone RP24-250G8 from chromosome... 42 1.3
12emb|CT025652.7| Mouse DNA sequence from clone RP24-68J3 on chrom... 42 1.3
13dbj|AP001000.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 1.3
14dbj|AP003098.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.3
15emb|CT009658.7| Mouse DNA sequence from clone CH29-505N5 on chro... 42 1.3
16emb|CR352327.13| Zebrafish DNA sequence from clone CH211-194C22 ... 40 5.1
17gb|AY363103.1|AY363102S2 Mus musculus diadenosine triphosphate h... 40 5.1
18gb|AC117447.6| Homo sapiens 3 BAC RP11-256E13 (Roswell Park Canc... 40 5.1
19gb|AC123834.4| Mus musculus BAC clone RP24-132N9 from chromosome... 40 5.1
20gb|AC110814.5| Homo sapiens BAC clone RP11-1338A7 from 4, comple... 40 5.1
21emb|AL365205.35| Human DNA sequence from clone RP11-298J23 on ch... 40 5.1
22ref|XM_777717.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 5.1
23gb|AC158529.2| Mus musculus BAC clone RP23-263H3 from chromosome... 40 5.1
24gb|AC159283.2| Mus musculus BAC clone RP23-317B21 from chromosom... 40 5.1
25gb|AF332862.1|AF332859S2 Mus musculus diadenosine triphosphate h... 40 5.1
26dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
27gb|AC013265.7| Homo sapiens BAC clone RP11-197H3 from 2, complet... 40 5.1
28dbj|AP003948.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
29gb|AC149875.2| Xenopus tropicalis clone CH216-151P11, complete s... 40 5.1
30emb|AL954355.10| Mouse DNA sequence from clone RP23-94F6 on chro... 40 5.1
31gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome 40 5.1
32emb|AL589696.10| Mouse DNA sequence from clone RP23-454M13 on ch... 40 5.1
33emb|AL135758.32| Mouse DNA sequence from clone RP21-117J5 on chr... 40 5.1 
>ref|XM_477988.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 908

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 123 cagaatccaatccaataatccgaattgtataaggcccaaccaggaaatctcataca 178
           ||||||||||||||||||||||||| || ||   |||||||| | |||||||||||
Sbjct: 871 cagaatccaatccaataatccgaatagtgtacaacccaaccaagtaatctcataca 816



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 358 ctgtaagtgcccatgccgatggtggagc 385
           ||||||||||||||||| ||| ||||||
Sbjct: 670 ctgtaagtgcccatgccaatgttggagc 643
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>emb|X85747.1|OS1A1COX O.sativa mRNA for 1-aminocyclopropane-1-carboxylate oxidase
          Length = 1595

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                   
Query: 123 cagaatccaatccaataatccgaattgtataaggcccaaccaggaaatctcataca 178
           ||||||||||||||||||||||||| || ||   |||||||| | |||||||||||
Sbjct: 197 cagaatccaatccaataatccgaatagtgtacaacccaaccaagtaatctcataca 252
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                        
Query: 123      cagaatccaatccaataatccgaattgtataaggcccaaccaggaaatctcataca 178
                ||||||||||||||||||||||||| || ||   |||||||| | |||||||||||
Sbjct: 16173155 cagaatccaatccaataatccgaatagtgtacaacccaaccaagtaatctcataca 16173210



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 358      ctgtaagtgcccatgccgatggtggagc 385
                ||||||||||||||||| ||| ||||||
Sbjct: 16173356 ctgtaagtgcccatgccaatgttggagc 16173383
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>dbj|AP005256.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0038F09
          Length = 166568

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 49/56 (87%)
 Strand = Plus / Plus

                                                                      
Query: 123    cagaatccaatccaataatccgaattgtataaggcccaaccaggaaatctcataca 178
              ||||||||||||||||||||||||| || ||   |||||||| | |||||||||||
Sbjct: 143488 cagaatccaatccaataatccgaatagtgtacaacccaaccaagtaatctcataca 143543



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 358    ctgtaagtgcccatgccgatggtggagc 385
              ||||||||||||||||| ||| ||||||
Sbjct: 143689 ctgtaagtgcccatgccaatgttggagc 143716
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>dbj|AK059964.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F08, full
           insert sequence
          Length = 908

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 123 cagaatccaatccaataatccgaattgtataaggcccaaccaggaaatctcataca 178
           ||||||||||||||||||||||||| || ||   |||||||| | |||||||||||
Sbjct: 871 cagaatccaatccaataatccgaatagtgtacaacccaaccaagtaatctcataca 816



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 358 ctgtaagtgcccatgccgatggtggagc 385
           ||||||||||||||||| ||| ||||||
Sbjct: 670 ctgtaagtgcccatgccaatgttggagc 643
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>gb|AC125078.2| Mus musculus BAC clone RP23-478C7 from chromosome 6, complete sequence
          Length = 204570

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 96    tacagaaaatgagtgtgtatat 117
             ||||||||||||||||||||||
Sbjct: 45578 tacagaaaatgagtgtgtatat 45557
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>gb|AC166572.1| Mus musculus BAC clone RP23-346L20 from chromosome 16, complete
             sequence
          Length = 183111

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 103   aatgagtgtgtatatgtatgcagaat 128
             ||||||||||||||||||| ||||||
Sbjct: 19324 aatgagtgtgtatatgtattcagaat 19349
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>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 118     gtatgcagaatccaatccaata 139
               ||||||||||||||||||||||
Sbjct: 1033102 gtatgcagaatccaatccaata 1033123



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 118    gtatgcagaatccaatccaata 139
              ||||||||||||||||||||||
Sbjct: 890070 gtatgcagaatccaatccaata 890091
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>gb|AC127430.4| Homo sapiens chromosome 3 clone CTD-2563A18, complete sequence
          Length = 181750

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 25     ataaagtggtataatacatttg 46
              ||||||||||||||||||||||
Sbjct: 103586 ataaagtggtataatacatttg 103607
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>emb|CT027602.9| Mouse DNA sequence from clone RP24-359G24 on chromosome 16, complete
            sequence
          Length = 194283

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 103  aatgagtgtgtatatgtatgcagaat 128
            ||||||||||||||||||| ||||||
Sbjct: 3130 aatgagtgtgtatatgtattcagaat 3105
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>gb|AC126937.3| Mus musculus BAC clone RP24-250G8 from chromosome 17, complete sequence
          Length = 150579

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 104    atgagtgtgtatatgtatgca 124
              |||||||||||||||||||||
Sbjct: 123137 atgagtgtgtatatgtatgca 123117
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>emb|CT025652.7| Mouse DNA sequence from clone RP24-68J3 on chromosome 17, complete
              sequence
          Length = 226856

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 104    atgagtgtgtatatgtatgca 124
              |||||||||||||||||||||
Sbjct: 147380 atgagtgtgtatatgtatgca 147400
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>dbj|AP001000.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-676M6, complete
             sequence
          Length = 204955

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 120   atgcagaatccaatccaataa 140
             |||||||||||||||||||||
Sbjct: 21446 atgcagaatccaatccaataa 21426
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>dbj|AP003098.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-141D23, complete
              sequence
          Length = 183853

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 120    atgcagaatccaatccaataa 140
              |||||||||||||||||||||
Sbjct: 155403 atgcagaatccaatccaataa 155383
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>emb|CT009658.7| Mouse DNA sequence from clone CH29-505N5 on chromosome 17, complete
             sequence
          Length = 190153

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 104   atgagtgtgtatatgtatgca 124
             |||||||||||||||||||||
Sbjct: 17548 atgagtgtgtatatgtatgca 17568
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>emb|CR352327.13| Zebrafish DNA sequence from clone CH211-194C22 in linkage group 8,
              complete sequence
          Length = 203325

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    gagtgtgtatatgtatgcag 125
              ||||||||||||||||||||
Sbjct: 158472 gagtgtgtatatgtatgcag 158453
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>gb|AY363103.1|AY363102S2 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, exons 6
             through 10 and partial cds
          Length = 688489

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 343   cgctgagctccttaactgtaagtg 366
             ||||||||||||||| ||||||||
Sbjct: 35364 cgctgagctccttaaatgtaagtg 35387
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>gb|AC117447.6| Homo sapiens 3 BAC RP11-256E13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 78229

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   aaatgagtgtgtatatgtat 121
             ||||||||||||||||||||
Sbjct: 27176 aaatgagtgtgtatatgtat 27157
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>gb|AC123834.4| Mus musculus BAC clone RP24-132N9 from chromosome 13, complete sequence
          Length = 153028

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 187    tgaagacagcaaacacattt 206
              ||||||||||||||||||||
Sbjct: 150366 tgaagacagcaaacacattt 150385
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>gb|AC110814.5| Homo sapiens BAC clone RP11-1338A7 from 4, complete sequence
          Length = 137723

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   catacataacctagtgaaga 192
             ||||||||||||||||||||
Sbjct: 17164 catacataacctagtgaaga 17145
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>emb|AL365205.35| Human DNA sequence from clone RP11-298J23 on chromosome 6 Contains the
             5' end of the TFEB gene for transcription factor EB, the
             PGC gene for progastricsin, the FRS3 gene for fibroblast
             growth factor receptor substrate 3, the C6orf49 gene for
             chromosome 6 open reading frame 49, the 3' end of the
             USP49 gene for ubiquitin specific protease 49, the 3' end
             of a novel gene and 5 CpG islands, complete sequence
          Length = 106711

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   atgagtgtgtatatgtatgc 123
             ||||||||||||||||||||
Sbjct: 93449 atgagtgtgtatatgtatgc 93430
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>ref|XM_777717.1| PREDICTED: Strongylocentrotus purpuratus similar to WD repeat
           domain 41 (LOC577493), mRNA
          Length = 1368

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 293 tcccgtaaacctccagcgccgagc 316
           ||||||| ||||||||||||||||
Sbjct: 586 tcccgtacacctccagcgccgagc 563
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>gb|AC158529.2| Mus musculus BAC clone RP23-263H3 from chromosome 13, complete sequence
          Length = 172769

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   tgaagacagcaaacacattt 206
             ||||||||||||||||||||
Sbjct: 34629 tgaagacagcaaacacattt 34648
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>gb|AC159283.2| Mus musculus BAC clone RP23-317B21 from chromosome 12, complete sequence
          Length = 245361

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    tgagtgtgtatatgtatgca 124
              ||||||||||||||||||||
Sbjct: 161269 tgagtgtgtatatgtatgca 161250
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>gb|AF332862.1|AF332859S2 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, intron 5,
              partial sequence
          Length = 166617

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 343    cgctgagctccttaactgtaagtg 366
              ||||||||||||||| ||||||||
Sbjct: 155825 cgctgagctccttaaatgtaagtg 155848
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 123      cagaatccaatccaataatc 142
                ||||||||||||||||||||
Sbjct: 27061124 cagaatccaatccaataatc 27061143
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>gb|AC013265.7| Homo sapiens BAC clone RP11-197H3 from 2, complete sequence
          Length = 151721

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     aggtatattgagaatgataa 28
             ||||||||||||||||||||
Sbjct: 38836 aggtatattgagaatgataa 38855
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>dbj|AP003948.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1211_G06
          Length = 96421

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   cagaatccaatccaataatc 142
             ||||||||||||||||||||
Sbjct: 32211 cagaatccaatccaataatc 32230
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>gb|AC149875.2| Xenopus tropicalis clone CH216-151P11, complete sequence
          Length = 155394

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    tgtgtatatgtatgcagaat 128
              ||||||||||||||||||||
Sbjct: 138283 tgtgtatatgtatgcagaat 138264
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>emb|AL954355.10| Mouse DNA sequence from clone RP23-94F6 on chromosome X, complete
             sequence
          Length = 133265

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   aaccaggaaatctcatacat 179
             ||||||||||||||||||||
Sbjct: 17145 aaccaggaaatctcatacat 17164
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>gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome
          Length = 1181404

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 129     ccaatccaataatccgaatt 148
               ||||||||||||||||||||
Sbjct: 1155067 ccaatccaataatccgaatt 1155048
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>emb|AL589696.10| Mouse DNA sequence from clone RP23-454M13 on chromosome 15, complete
              sequence
          Length = 207431

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 343    cgctgagctccttaactgtaagtg 366
              ||||||||||||||| ||||||||
Sbjct: 125286 cgctgagctccttaaatgtaagtg 125263
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>emb|AL135758.32| Mouse DNA sequence from clone RP21-117J5 on chromosome 5, complete
             sequence
          Length = 142667

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   aaccaggaaatctcatacat 179
             ||||||||||||||||||||
Sbjct: 60098 aaccaggaaatctcatacat 60117


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,405,257
Number of Sequences: 3902068
Number of extensions: 3405257
Number of successful extensions: 85860
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85691
Number of HSP's gapped (non-prelim): 169
length of query: 385
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 363
effective length of database: 17,147,199,772
effective search space: 6224433517236
effective search space used: 6224433517236
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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