ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart52b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1R126B_XENLA (Q6IRP0) RING finger protein 126-B 34 0.083
2R126A_XENLA (Q7T0Q3) RING finger protein 126-A 34 0.083
3ZAN_HUMAN (Q9Y493) Zonadhesin precursor 32 0.41
4RN126_XENTR (Q6DIP3) RING finger protein 126 32 0.41
5CJ053_HUMAN (Q8N6V4) Protein C10orf53 30 1.2
6YAY8_SCHPO (Q10216) Hypothetical oxidoreductase C4H3.08 in chrom... 30 1.6
7SLAP2_CLOTM (Q06853) Cell surface glycoprotein 2 precursor (S-la... 29 2.7
8F13B_HUMAN (P05160) Coagulation factor XIII B chain precursor (P... 29 2.7
9SPS_MAIZE (P31927) Sucrose-phosphate synthase (EC 2.4.1.14) (UDP... 28 4.6
10ZAN_PIG (Q28983) Zonadhesin precursor 28 4.6
11FNBA_STAAU (P14738) Fibronectin-binding protein precursor (FNBP) 28 6.0
12YKK2_YEAST (P34249) Hypothetical 11.4 kDa protein in APE1/LAP4-C... 28 7.8
13TNR18_MOUSE (O35714) Tumor necrosis factor receptor superfamily ... 28 7.8

>R126B_XENLA (Q6IRP0) RING finger protein 126-B|
          Length = 312

 Score = 34.3 bits (77), Expect = 0.083
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 94  KSLPNTQRYYCHTKHYQLTPRLTRHTC 174
           ++LP   RY+CH+   ++TPRL  +TC
Sbjct: 3   EALPEAGRYFCHSCTAEITPRLPEYTC 29



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>R126A_XENLA (Q7T0Q3) RING finger protein 126-A|
          Length = 312

 Score = 34.3 bits (77), Expect = 0.083
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 94  KSLPNTQRYYCHTKHYQLTPRLTRHTC 174
           ++LP   RY+CH+   ++TPRL  +TC
Sbjct: 3   EALPKAGRYFCHSCTAEITPRLPEYTC 29



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>ZAN_HUMAN (Q9Y493) Zonadhesin precursor|
          Length = 2812

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 90   PKVPTEHTTVLLPHKTLPADSETNTPHLLVLQTRTP 197
            P +PTE TT+     T+P +  T +P  L + T  P
Sbjct: 927  PTIPTEETTISTEKLTIPTEKPTISPEKLTIPTEKP 962



 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +3

Query: 69   LALVAPAPKVPTEHTTVLLPHKTLPADSETNTPHLLVLQTRTP 197
            L +    P +P E TT+     T+P +  T +P    + T  P
Sbjct: 878  LTIPTEKPTIPIEETTISTEKLTIPTEKPTISPEKPTISTEKP 920



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>RN126_XENTR (Q6DIP3) RING finger protein 126|
          Length = 311

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 94  KSLPNTQRYYCHTKHYQLTPRLTRHTC 174
           ++LP   RY+CH+   ++ PRL  +TC
Sbjct: 3   EALPEAGRYFCHSCTAEIIPRLPEYTC 29



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>CJ053_HUMAN (Q8N6V4) Protein C10orf53|
          Length = 157

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 118 YYCHTKHYQ---LTPRLTRHTCSYYRLAHHGHTSPCSSRASP 234
           ++C+ K  +   LTP   + T S  RL  H  +SPC  + SP
Sbjct: 63  FHCNIKDLEFGKLTPSSDKRTTSSSRLTFHQLSSPCGMKVSP 104



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>YAY8_SCHPO (Q10216) Hypothetical oxidoreductase C4H3.08 in chromosome I (EC|
           1.-.-.-)
          Length = 286

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = -3

Query: 290 SGQILHPNGGTIVNS 246
           +GQ LHPNGGT++N+
Sbjct: 272 TGQTLHPNGGTVINN 286



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>SLAP2_CLOTM (Q06853) Cell surface glycoprotein 2 precursor (S-layer protein 2)|
          Length = 688

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 78  VAPAPKVPTEHTTVLLPHKTLPADSETNTPHLLVLQTRTP 197
           V   P+VPT+  T   P  T P+ + T TP      ++TP
Sbjct: 368 VISEPEVPTQTPTQTPPTTTAPSQTPTQTPPTTTAPSQTP 407



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>F13B_HUMAN (P05160) Coagulation factor XIII B chain precursor|
           (Protein-glutamine gamma-glutamyltransferase B chain)
           (Transglutaminase B chain) (Fibrin-stabilizing factor B
           subunit)
          Length = 661

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 109 TQRYYCHTKHYQLTPRLTRHTCSYYRLAHHGHTSP 213
           T+   C T  + LTP+ T+  CS  RL  +G+  P
Sbjct: 192 TEEVECLTYGWSLTPKCTKLKCSSLRLIENGYFHP 226



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>SPS_MAIZE (P31927) Sucrose-phosphate synthase (EC 2.4.1.14)|
           (UDP-glucose-fructose-phosphate glucosyltransferase)
          Length = 1068

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 89  RWSHEGKRQTLNKIM 45
           RWSH+G RQT+ K+M
Sbjct: 885 RWSHDGARQTIAKLM 899



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>ZAN_PIG (Q28983) Zonadhesin precursor|
          Length = 2476

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 90  PKVPTEHTTVLLPHKTLPADSETNTPHLLVLQTRTP 197
           P VPTE TT+     T+P +  T     L + T  P
Sbjct: 476 PMVPTERTTIPTERTTIPTEKPTVPTEKLTVPTEKP 511



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>FNBA_STAAU (P14738) Fibronectin-binding protein precursor (FNBP)|
          Length = 1018

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 84  PAPKVPTEHTTVLLPHKTLPADSETNTP 167
           P P+VP+E  T   P   +P++ ET TP
Sbjct: 896 PTPEVPSEPETPTPPTPEVPSEPETPTP 923



 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 84  PAPKVPTEHTTVLLPHKTLPADSETNTP 167
           P P+VP+E  T   P   +P++ ET TP
Sbjct: 882 PTPEVPSEPETPTPPTPEVPSEPETPTP 909



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>YKK2_YEAST (P34249) Hypothetical 11.4 kDa protein in APE1/LAP4-CWP1 intergenic|
           region
          Length = 101

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 205 CARGVRVCSTSKCGVLVSESAGSVLCGSSTVVC 107
           C+ GV +CS S CG LV      VL   +  VC
Sbjct: 16  CSFGVLLCSGSNCGRLVGSERRKVLYVFNVNVC 48



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>TNR18_MOUSE (O35714) Tumor necrosis factor receptor superfamily member 18|
           precursor (Glucocorticoid-induced TNFR-related protein)
          Length = 228

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 151 ESAGSVLCGSSTVVCSVGTFGAG 83
           ES G ++ G   V C++GTF AG
Sbjct: 89  ESQGDIVFGFRCVACAMGTFSAG 111


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,291,309
Number of Sequences: 219361
Number of extensions: 820971
Number of successful extensions: 2577
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2577
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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