Clone Name | rbart52b04 |
---|---|
Clone Library Name | barley_pub |
>gb|S72926.1|S72926 Hordeum vulgare glucose and ribitol dehydrogenase homolog mRNA, complete cds Length = 1170 Score = 579 bits (292), Expect = e-162 Identities = 292/292 (100%) Strand = Plus / Minus Query: 1 agagggagtatgaccatagttcaacttgcaatgcatgcacgttacattattttatttaac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1168 agagggagtatgaccatagttcaacttgcaatgcatgcacgttacattattttatttaac 1109 Query: 61 gtttgacgcttgccctcgtggctccagcgccaaaagtccctaccgaacacacaacggtac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1108 gtttgacgcttgccctcgtggctccagcgccaaaagtccctaccgaacacacaacggtac 1049 Query: 121 tactgccacacaaaacactaccagctgactccgagactaacacgccacacttgctcgtac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1048 tactgccacacaaaacactaccagctgactccgagactaacacgccacacttgctcgtac 989 Query: 181 tacagactcgcacaccacgggcacacttcaccctgttcttcccgagcttctccaacctcg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 988 tacagactcgcacaccacgggcacacttcaccctgttcttcccgagcttctccaacctcg 929 Query: 241 atctagctattgacgatggtaccaccgttggggtggaggatctggccggaga 292 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 928 atctagctattgacgatggtaccaccgttggggtggaggatctggccggaga 877
>gb|AY104946.1| Zea mays PCO144726 mRNA sequence Length = 1424 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Minus Query: 241 atctagctattgacgatggtaccaccgttggggtggaggatctggccgga 290 |||||||||||||||||| || |||||| |||||||||||||||||| Sbjct: 1079 atctagctattgacgatgacgcctccgttgacgtggaggatctggccgga 1030
>emb|BX510645.7| Zebrafish DNA sequence from clone DKEY-5G21 in linkage group 14, complete sequence Length = 218603 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 36 tgcacgttacattattttatttaac 60 ||||||||| ||||||||||||||| Sbjct: 158017 tgcacgttaaattattttatttaac 157993
>ref|XM_316414.2| Anopheles gambiae str. PEST ENSANGP00000013004 (ENSANGG00000010515), partial mRNA Length = 3417 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 cctgttcttcccgagcttctc 232 ||||||||||||||||||||| Sbjct: 2193 cctgttcttcccgagcttctc 2213
>ref|XM_557048.1| Anopheles gambiae str. PEST ENSANGP00000027182 (ENSANGG00000010515), partial mRNA Length = 4998 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 cctgttcttcccgagcttctc 232 ||||||||||||||||||||| Sbjct: 3672 cctgttcttcccgagcttctc 3692
>ref|NM_001035260.1| Homo sapiens vacuolar protein sorting 26 homolog A (yeast) (VPS26A), transcript variant 2, mRNA Length = 2564 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aacacacaacggtactactg 125 |||||||||||||||||||| Sbjct: 1707 aacacacaacggtactactg 1688
>ref|NM_004896.3| Homo sapiens vacuolar protein sorting 26 homolog A (yeast) (VPS26A), transcript variant 1, mRNA Length = 2707 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aacacacaacggtactactg 125 |||||||||||||||||||| Sbjct: 1850 aacacacaacggtactactg 1831
>gb|BC022505.1| Homo sapiens vacuolar protein sorting 26 homolog A (yeast), mRNA (cDNA clone MGC:26471 IMAGE:4799288), complete cds Length = 2698 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aacacacaacggtactactg 125 |||||||||||||||||||| Sbjct: 1836 aacacacaacggtactactg 1817
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ttattttatttaacgtttga 66 |||||||||||||||||||| Sbjct: 28756869 ttattttatttaacgtttga 28756850
>ref|XM_381629.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01453.1) partial mRNA Length = 1062 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 ttgacgatggtaccaccgtt 269 |||||||||||||||||||| Sbjct: 650 ttgacgatggtaccaccgtt 631
>emb|CR709993.2|CNS0GAS5 Tetraodon nigroviridis full-length cDNA Length = 1690 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 tgttcttcccgagcttctcc 233 |||||||||||||||||||| Sbjct: 514 tgttcttcccgagcttctcc 495
>emb|AL596223.3| Human DNA sequence from clone RP11-227H15 on chromosome 10 Contains 3' end of the VPS26 gene for vacuolar protein sorting 26 (yeast) (HB58, Hbeta58, FLJ12930), the SUPV3L1 gene for suppressor of var1, 3-like 1 (S. cerevisiae)(SUV3), the gene for a novel hexokinase domain containing protein (FLJ37767), the 5' end of the HK1 gene for hexokinase 1 (HKI, HXK1), two novel genes, a ribosomal protein S15a (RPS15A) pseudogene and two CpG islands, complete sequence Length = 180548 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aacacacaacggtactactg 125 |||||||||||||||||||| Sbjct: 3110 aacacacaacggtactactg 3091
>emb|CR861348.1| Pongo pygmaeus mRNA; cDNA DKFZp459G2011 (from clone DKFZp459G2011) Length = 2570 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aacacacaacggtactactg 125 |||||||||||||||||||| Sbjct: 1705 aacacacaacggtactactg 1686
>emb|BX957274.8| Zebrafish DNA sequence from clone DKEY-155F10 in linkage group 9, complete sequence Length = 216817 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 atgcacgttacattatttta 54 |||||||||||||||||||| Sbjct: 147776 atgcacgttacattatttta 147795
>emb|CR617214.1| full-length cDNA clone CS0DI084YH16 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 2498 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aacacacaacggtactactg 125 |||||||||||||||||||| Sbjct: 1684 aacacacaacggtactactg 1665
>dbj|AK022992.1| Homo sapiens cDNA FLJ12930 fis, clone NT2RP2004816, highly similar to H58 PROTEIN Length = 2628 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aacacacaacggtactactg 125 |||||||||||||||||||| Sbjct: 1779 aacacacaacggtactactg 1760
>gb|AF054179.1|AF054179 Homo sapiens H beta 58 homolog mRNA, complete cds Length = 2669 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aacacacaacggtactactg 125 |||||||||||||||||||| Sbjct: 1807 aacacacaacggtactactg 1788
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ttattttatttaacgtttga 66 |||||||||||||||||||| Sbjct: 28848193 ttattttatttaacgtttga 28848174
>gb|AF175266.1|AF175266 Homo sapiens vacuolar sorting protein 26 (VPS26) mRNA, complete cds Length = 2669 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aacacacaacggtactactg 125 |||||||||||||||||||| Sbjct: 1807 aacacacaacggtactactg 1788
>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence Length = 147344 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ttattttatttaacgtttga 66 |||||||||||||||||||| Sbjct: 63850 ttattttatttaacgtttga 63831
>gb|AC150476.3| Dasypus novemcinctus clone VMRC5-421E14, complete sequence Length = 68689 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 cgcttgccctcgtggctcca 86 |||||||||||||||||||| Sbjct: 7546 cgcttgccctcgtggctcca 7527
>emb|BX649092.1|HSM809243 Homo sapiens mRNA; cDNA DKFZp779H0669 (from clone DKFZp779H0669) Length = 2614 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aacacacaacggtactactg 125 |||||||||||||||||||| Sbjct: 1749 aacacacaacggtactactg 1730
>emb|BX647725.1|HSM807871 Homo sapiens mRNA; cDNA DKFZp686H24262 (from clone DKFZp686H24262) Length = 4176 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 aacacacaacggtactactg 125 |||||||||||||||||||| Sbjct: 1694 aacacacaacggtactactg 1675
>dbj|AP002340.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2011F17, complete sequence Length = 165747 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cattattttatttaacgttt 64 |||||||||||||||||||| Sbjct: 37847 cattattttatttaacgttt 37866 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,603,806 Number of Sequences: 3902068 Number of extensions: 2603806 Number of successful extensions: 43454 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43388 Number of HSP's gapped (non-prelim): 66 length of query: 292 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 270 effective length of database: 17,147,199,772 effective search space: 4629743938440 effective search space used: 4629743938440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)