ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart52b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|S72926.1|S72926 Hordeum vulgare glucose and ribitol dehydroge... 579 e-162
2gb|AY104946.1| Zea mays PCO144726 mRNA sequence 52 0.001
3emb|BX510645.7| Zebrafish DNA sequence from clone DKEY-5G21 in l... 42 0.97
4ref|XM_316414.2| Anopheles gambiae str. PEST ENSANGP00000013004 ... 42 0.97
5ref|XM_557048.1| Anopheles gambiae str. PEST ENSANGP00000027182 ... 42 0.97
6ref|NM_001035260.1| Homo sapiens vacuolar protein sorting 26 hom... 40 3.8
7ref|NM_004896.3| Homo sapiens vacuolar protein sorting 26 homolo... 40 3.8
8gb|BC022505.1| Homo sapiens vacuolar protein sorting 26 homolog ... 40 3.8
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 3.8
10ref|XM_381629.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 3.8
11emb|CR709993.2|CNS0GAS5 Tetraodon nigroviridis full-length cDNA 40 3.8
12emb|AL596223.3| Human DNA sequence from clone RP11-227H15 on chr... 40 3.8
13emb|CR861348.1| Pongo pygmaeus mRNA; cDNA DKFZp459G2011 (from cl... 40 3.8
14emb|BX957274.8| Zebrafish DNA sequence from clone DKEY-155F10 in... 40 3.8
15emb|CR617214.1| full-length cDNA clone CS0DI084YH16 of Placenta ... 40 3.8
16dbj|AK022992.1| Homo sapiens cDNA FLJ12930 fis, clone NT2RP20048... 40 3.8
17gb|AF054179.1|AF054179 Homo sapiens H beta 58 homolog mRNA, comp... 40 3.8
18dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
19gb|AF175266.1|AF175266 Homo sapiens vacuolar sorting protein 26 ... 40 3.8
20gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 geno... 40 3.8
21gb|AC150476.3| Dasypus novemcinctus clone VMRC5-421E14, complete... 40 3.8
22emb|BX649092.1|HSM809243 Homo sapiens mRNA; cDNA DKFZp779H0669 (... 40 3.8
23emb|BX647725.1|HSM807871 Homo sapiens mRNA; cDNA DKFZp686H24262 ... 40 3.8
24dbj|AP002340.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 3.8

>gb|S72926.1|S72926 Hordeum vulgare glucose and ribitol dehydrogenase homolog mRNA,
            complete cds
          Length = 1170

 Score =  579 bits (292), Expect = e-162
 Identities = 292/292 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    agagggagtatgaccatagttcaacttgcaatgcatgcacgttacattattttatttaac 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1168 agagggagtatgaccatagttcaacttgcaatgcatgcacgttacattattttatttaac 1109

                                                                        
Query: 61   gtttgacgcttgccctcgtggctccagcgccaaaagtccctaccgaacacacaacggtac 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1108 gtttgacgcttgccctcgtggctccagcgccaaaagtccctaccgaacacacaacggtac 1049

                                                                        
Query: 121  tactgccacacaaaacactaccagctgactccgagactaacacgccacacttgctcgtac 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1048 tactgccacacaaaacactaccagctgactccgagactaacacgccacacttgctcgtac 989

                                                                        
Query: 181  tacagactcgcacaccacgggcacacttcaccctgttcttcccgagcttctccaacctcg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988  tacagactcgcacaccacgggcacacttcaccctgttcttcccgagcttctccaacctcg 929

                                                                
Query: 241  atctagctattgacgatggtaccaccgttggggtggaggatctggccggaga 292
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928  atctagctattgacgatggtaccaccgttggggtggaggatctggccggaga 877



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>gb|AY104946.1| Zea mays PCO144726 mRNA sequence
          Length = 1424

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 241  atctagctattgacgatggtaccaccgttggggtggaggatctggccgga 290
            ||||||||||||||||||   || ||||||  ||||||||||||||||||
Sbjct: 1079 atctagctattgacgatgacgcctccgttgacgtggaggatctggccgga 1030



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>emb|BX510645.7| Zebrafish DNA sequence from clone DKEY-5G21 in linkage group 14, complete
              sequence
          Length = 218603

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 36     tgcacgttacattattttatttaac 60
              ||||||||| |||||||||||||||
Sbjct: 158017 tgcacgttaaattattttatttaac 157993



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>ref|XM_316414.2| Anopheles gambiae str. PEST ENSANGP00000013004 (ENSANGG00000010515),
            partial mRNA
          Length = 3417

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 212  cctgttcttcccgagcttctc 232
            |||||||||||||||||||||
Sbjct: 2193 cctgttcttcccgagcttctc 2213



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>ref|XM_557048.1| Anopheles gambiae str. PEST ENSANGP00000027182 (ENSANGG00000010515),
            partial mRNA
          Length = 4998

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 212  cctgttcttcccgagcttctc 232
            |||||||||||||||||||||
Sbjct: 3672 cctgttcttcccgagcttctc 3692



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>ref|NM_001035260.1| Homo sapiens vacuolar protein sorting 26 homolog A (yeast) (VPS26A),
            transcript variant 2, mRNA
          Length = 2564

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  aacacacaacggtactactg 125
            ||||||||||||||||||||
Sbjct: 1707 aacacacaacggtactactg 1688



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>ref|NM_004896.3| Homo sapiens vacuolar protein sorting 26 homolog A (yeast) (VPS26A),
            transcript variant 1, mRNA
          Length = 2707

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  aacacacaacggtactactg 125
            ||||||||||||||||||||
Sbjct: 1850 aacacacaacggtactactg 1831



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>gb|BC022505.1| Homo sapiens vacuolar protein sorting 26 homolog A (yeast), mRNA
            (cDNA clone MGC:26471 IMAGE:4799288), complete cds
          Length = 2698

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  aacacacaacggtactactg 125
            ||||||||||||||||||||
Sbjct: 1836 aacacacaacggtactactg 1817



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 47       ttattttatttaacgtttga 66
                ||||||||||||||||||||
Sbjct: 28756869 ttattttatttaacgtttga 28756850



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>ref|XM_381629.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01453.1)
           partial mRNA
          Length = 1062

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 250 ttgacgatggtaccaccgtt 269
           ||||||||||||||||||||
Sbjct: 650 ttgacgatggtaccaccgtt 631



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>emb|CR709993.2|CNS0GAS5 Tetraodon nigroviridis full-length cDNA
          Length = 1690

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 tgttcttcccgagcttctcc 233
           ||||||||||||||||||||
Sbjct: 514 tgttcttcccgagcttctcc 495



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>emb|AL596223.3| Human DNA sequence from clone RP11-227H15 on chromosome 10 Contains
            3' end of the VPS26 gene for vacuolar protein sorting 26
            (yeast) (HB58, Hbeta58, FLJ12930), the SUPV3L1 gene for
            suppressor of var1, 3-like 1 (S. cerevisiae)(SUV3), the
            gene for a novel hexokinase domain containing protein
            (FLJ37767), the 5' end of the HK1 gene for hexokinase 1
            (HKI, HXK1), two novel genes, a ribosomal protein S15a
            (RPS15A) pseudogene and two CpG islands, complete
            sequence
          Length = 180548

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  aacacacaacggtactactg 125
            ||||||||||||||||||||
Sbjct: 3110 aacacacaacggtactactg 3091



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>emb|CR861348.1| Pongo pygmaeus mRNA; cDNA DKFZp459G2011 (from clone DKFZp459G2011)
          Length = 2570

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  aacacacaacggtactactg 125
            ||||||||||||||||||||
Sbjct: 1705 aacacacaacggtactactg 1686



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>emb|BX957274.8| Zebrafish DNA sequence from clone DKEY-155F10 in linkage group 9,
              complete sequence
          Length = 216817

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     atgcacgttacattatttta 54
              ||||||||||||||||||||
Sbjct: 147776 atgcacgttacattatttta 147795



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>emb|CR617214.1| full-length cDNA clone CS0DI084YH16 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 2498

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  aacacacaacggtactactg 125
            ||||||||||||||||||||
Sbjct: 1684 aacacacaacggtactactg 1665



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>dbj|AK022992.1| Homo sapiens cDNA FLJ12930 fis, clone NT2RP2004816, highly similar to
            H58 PROTEIN
          Length = 2628

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  aacacacaacggtactactg 125
            ||||||||||||||||||||
Sbjct: 1779 aacacacaacggtactactg 1760



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>gb|AF054179.1|AF054179 Homo sapiens H beta 58 homolog mRNA, complete cds
          Length = 2669

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  aacacacaacggtactactg 125
            ||||||||||||||||||||
Sbjct: 1807 aacacacaacggtactactg 1788



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 47       ttattttatttaacgtttga 66
                ||||||||||||||||||||
Sbjct: 28848193 ttattttatttaacgtttga 28848174



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>gb|AF175266.1|AF175266 Homo sapiens vacuolar sorting protein 26 (VPS26) mRNA, complete cds
          Length = 2669

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  aacacacaacggtactactg 125
            ||||||||||||||||||||
Sbjct: 1807 aacacacaacggtactactg 1788



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>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete
             sequence
          Length = 147344

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    ttattttatttaacgtttga 66
             ||||||||||||||||||||
Sbjct: 63850 ttattttatttaacgtttga 63831



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>gb|AC150476.3| Dasypus novemcinctus clone VMRC5-421E14, complete sequence
          Length = 68689

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 67   cgcttgccctcgtggctcca 86
            ||||||||||||||||||||
Sbjct: 7546 cgcttgccctcgtggctcca 7527



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>emb|BX649092.1|HSM809243 Homo sapiens mRNA; cDNA DKFZp779H0669 (from clone DKFZp779H0669)
          Length = 2614

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  aacacacaacggtactactg 125
            ||||||||||||||||||||
Sbjct: 1749 aacacacaacggtactactg 1730



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>emb|BX647725.1|HSM807871 Homo sapiens mRNA; cDNA DKFZp686H24262 (from clone DKFZp686H24262)
          Length = 4176

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  aacacacaacggtactactg 125
            ||||||||||||||||||||
Sbjct: 1694 aacacacaacggtactactg 1675



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>dbj|AP002340.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2011F17, complete
             sequence
          Length = 165747

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 45    cattattttatttaacgttt 64
             ||||||||||||||||||||
Sbjct: 37847 cattattttatttaacgttt 37866


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,603,806
Number of Sequences: 3902068
Number of extensions: 2603806
Number of successful extensions: 43454
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43388
Number of HSP's gapped (non-prelim): 66
length of query: 292
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 270
effective length of database: 17,147,199,772
effective search space: 4629743938440
effective search space used: 4629743938440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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