Clone Information

BLAST Search Result

Clone Name	rbart52b03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RS4_MAIZE (O22424) 40S ribosomal protein S4	125	3e-29
2	RS4_SOLTU (P46300) 40S ribosomal protein S4	122	3e-28
3	RS4_PRUAR (O81363) 40S ribosomal protein S4	122	3e-28
4	RS4_ARATH (P49204) 40S ribosomal protein S4	121	5e-28
5	RS4_GOSHI (P46299) 40S ribosomal protein S4	119	2e-27
6	RS4_ORYSA (P49398) 40S ribosomal protein S4 (SCAR protein SS620)	97	3e-22
7	RS4Y1_MONDO (O62739) 40S ribosomal protein S4, Y isoform 1	99	2e-21
8	RS4X_MONDO (O62738) 40S ribosomal protein S4, X isoform	99	2e-21
9	RS4_XENTR (Q6PBC4) 40S ribosomal protein S4	98	4e-21
10	RS4_XENLA (P49401) 40S ribosomal protein S4	98	4e-21
11	RS4_CRIGR (P47961) 40S ribosomal protein S4	98	4e-21
12	RS4_CHICK (P47836) 40S ribosomal protein S4	98	4e-21
13	RS4X_RAT (P62703) 40S ribosomal protein S4, X isoform	98	4e-21
14	RS4X_MOUSE (P62702) 40S ribosomal protein S4, X isoform	98	4e-21
15	RS4X_MESAU (P62704) 40S ribosomal protein S4, X isoform	98	4e-21
16	RS4X_MACFU (Q76MY1) 40S ribosomal protein S4, X isoform	98	4e-21
17	RS4X_HUMAN (P62701) 40S ribosomal protein S4, X isoform (Single ...	98	4e-21
18	RS4X_FELCA (P62705) 40S ribosomal protein S4, X isoform	98	4e-21
19	RS4X_CERAE (Q76N24) 40S ribosomal protein S4, X isoform	98	4e-21
20	RS4X_BRARE (Q642H9) 40S ribosomal protein S4, X isoform	97	9e-21
21	RS4Y1_HUMAN (P22090) 40S ribosomal protein S4, Y isoform 1	96	2e-20
22	RS4Y1_PONPY (Q861U7) 40S ribosomal protein S4, Y isoform 1	96	3e-20
23	RS4Y1_MACFU (P79183) 40S ribosomal protein S4, Y isoform 1	96	3e-20
24	RS4Y1_GORGO (Q861U8) 40S ribosomal protein S4, Y isoform 1	95	4e-20
25	RS4_DROME (P41042) 40S ribosomal protein S4	94	8e-20
26	RS4Y1_PANTR (Q861U9) 40S ribosomal protein S4, Y isoform 1	94	1e-19
27	RS4Y1_PANPA (Q861V0) 40S ribosomal protein S4, Y isoform 1	94	1e-19
28	RS4_ICTPU (Q90YS0) 40S ribosomal protein S4	93	1e-19
29	RS4Y2_HUMAN (Q8TD47) 40S ribosomal protein S4, Y isoform 2	92	2e-19
30	RS4Y2_PANTR (Q6GVM7) 40S ribosomal protein S4, Y isoform 2	92	3e-19
31	RS4B_SCHPO (Q9USW5) 40S ribosomal protein S4-B	83	2e-16
32	RS4C_SCHPO (Q9P4W9) 40S ribosomal protein S4-C	82	3e-16
33	RS4A_SCHPO (P87158) 40S ribosomal protein S4-A	82	3e-16
34	RS4_YARLI (O59950) 40S ribosomal protein S4 (S7)	79	3e-15
35	RS4_CANAL (P47837) 40S ribosomal protein S4 (S7)	77	1e-14
36	RS4_DICDI (P51405) 40S ribosomal protein S4	76	2e-14
37	RS4_YEAST (P05753) 40S ribosomal protein S4 (S7) (YS6) (RP5)	76	2e-14
38	RS4_CAEEL (Q9N3X2) 40S ribosomal protein S4	75	3e-14
39	FOSB_BACLD (Q65KJ5) Metallothiol transferase fosB (EC 2.5.1.-) (...	35	0.043
40	RS4_HORSE (P55832) 40S ribosomal protein S4 (Fragment)	35	0.043
41	RS4_BOVIN (P79103) 40S ribosomal protein S4 (Fragment)	35	0.043
42	Y977_HAEDU (Q7VMJ8) UPF0078 membrane protein HD_0977	31	0.62
43	LEU1_SOYBN (Q39891) Probable 2-isopropylmalate synthase (EC 2.3....	31	0.81
44	YCGV_ECO57 (Q8X583) Hypothetical protein ycgV	30	1.4
45	EPN1_MOUSE (Q80VP1) Epsin-1 (EPS-15-interacting protein 1) (Inte...	28	4.0
46	RS4E_PYRKO (Q5JJG0) 30S ribosomal protein S4e	28	5.3
47	ACHA5_PANTR (Q5IS51) Neuronal acetylcholine receptor protein, al...	28	5.3
48	ACHA5_HUMAN (P30532) Neuronal acetylcholine receptor protein, al...	28	5.3
49	MEGF8_MOUSE (P60882) Multiple epidermal growth factor-like domai...	28	5.3
50	MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domai...	28	5.3
51	COHA1_CANFA (Q9N281) Collagen alpha-1(XVII) chain (Bullous pemph...	28	6.9
52	ACHA5_RAT (P20420) Neuronal acetylcholine receptor protein, alph...	28	6.9
53	ACHA5_CHICK (P26152) Neuronal acetylcholine receptor protein, al...	27	9.0

>RS4_MAIZE (O22424) 40S ribosomal protein S4|
          Length = 265

 Score =  125 bits (313), Expect = 3e-29
 Identities = 58/64 (90%), Positives = 62/64 (96%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVIKNREKHKG+FETIHVED+ GHQFATR+GNVFTIGKG KPWVSLPKGKGIKL+IIEEQ
Sbjct: 193 GVIKNREKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQ 252

Query: 213 RKRD 202
           RKRD
Sbjct: 253 RKRD 256

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>RS4_SOLTU (P46300) 40S ribosomal protein S4|
          Length = 264

 Score =  122 bits (305), Expect = 3e-28
 Identities = 54/63 (85%), Positives = 62/63 (98%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVIKNREKHKG+FET+H++D+QGH+FATRLGNVFT+GKGTKPWVSLPKGKGIKLTIIE+ 
Sbjct: 193 GVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLTIIEDA 252

Query: 213 RKR 205
           RKR
Sbjct: 253 RKR 255

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>RS4_PRUAR (O81363) 40S ribosomal protein S4|
          Length = 261

 Score =  122 bits (305), Expect = 3e-28
 Identities = 56/63 (88%), Positives = 61/63 (96%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVIKNREKHKG+FETIHV+DA GH+FATRLGNVFTIGKGTKPWVSLPKGKGIKLTI+EE 
Sbjct: 189 GVIKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTILEEA 248

Query: 213 RKR 205
           +KR
Sbjct: 249 KKR 251

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>RS4_ARATH (P49204) 40S ribosomal protein S4|
          Length = 262

 Score =  121 bits (303), Expect = 5e-28
 Identities = 55/63 (87%), Positives = 61/63 (96%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVIKNREKHKG+FETIH++D+ GH+FATRLGNV+TIGKGTKPWVSLPKGKGIKLTIIEE 
Sbjct: 193 GVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEA 252

Query: 213 RKR 205
           RKR
Sbjct: 253 RKR 255

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>RS4_GOSHI (P46299) 40S ribosomal protein S4|
          Length = 262

 Score =  119 bits (298), Expect = 2e-27
 Identities = 56/63 (88%), Positives = 60/63 (95%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVIKNREKHKG+FETIHV+DA GH+FATRLGNVFTIGKGTKPWVSLPK KGIKL+IIEE 
Sbjct: 193 GVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPKRKGIKLSIIEEA 252

Query: 213 RKR 205
           RKR
Sbjct: 253 RKR 255

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>RS4_ORYSA (P49398) 40S ribosomal protein S4 (SCAR protein SS620)|
          Length = 268

 Score = 96.7 bits (239), Expect(2) = 3e-22
 Identities = 45/49 (91%), Positives = 47/49 (95%)
 Frame = -3

Query: 366 KGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIE 220
           KG+FETIHVEDA GHQFATRLGNVFTIGKG KPWVSLPKGKGIKL+IIE
Sbjct: 205 KGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIE 253



 Score = 26.2 bits (56), Expect(2) = 3e-22
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -2

Query: 394 WCDQEQGEA*GN 359
           WCDQ+QGEA G+
Sbjct: 196 WCDQQQGEAKGS 207

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>RS4Y1_MONDO (O62739) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 99.4 bits (246), Expect = 2e-21
 Identities = 43/63 (68%), Positives = 53/63 (84%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVI NREKH G+F+ +HV+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+
Sbjct: 192 GVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4X_MONDO (O62738) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 99.4 bits (246), Expect = 2e-21
 Identities = 43/63 (68%), Positives = 53/63 (84%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVI NREKH G+F+ +HV+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+
Sbjct: 192 GVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4_XENTR (Q6PBC4) 40S ribosomal protein S4|
          Length = 262

 Score = 98.2 bits (243), Expect = 4e-21
 Identities = 42/63 (66%), Positives = 53/63 (84%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVI NRE+H G+F+ +HV+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+
Sbjct: 192 GVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4_XENLA (P49401) 40S ribosomal protein S4|
          Length = 262

 Score = 98.2 bits (243), Expect = 4e-21
 Identities = 42/63 (66%), Positives = 53/63 (84%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVI NRE+H G+F+ +HV+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+
Sbjct: 192 GVITNRERHPGSFDVVHVKDANGNNFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4_CRIGR (P47961) 40S ribosomal protein S4|
          Length = 262

 Score = 98.2 bits (243), Expect = 4e-21
 Identities = 42/63 (66%), Positives = 53/63 (84%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVI NRE+H G+F+ +HV+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+
Sbjct: 192 GVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4_CHICK (P47836) 40S ribosomal protein S4|
          Length = 262

 Score = 98.2 bits (243), Expect = 4e-21
 Identities = 42/63 (66%), Positives = 53/63 (84%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVI NRE+H G+F+ +HV+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+
Sbjct: 192 GVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4X_RAT (P62703) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 98.2 bits (243), Expect = 4e-21
 Identities = 42/63 (66%), Positives = 53/63 (84%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVI NRE+H G+F+ +HV+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+
Sbjct: 192 GVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4X_MOUSE (P62702) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 98.2 bits (243), Expect = 4e-21
 Identities = 42/63 (66%), Positives = 53/63 (84%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVI NRE+H G+F+ +HV+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+
Sbjct: 192 GVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4X_MESAU (P62704) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 98.2 bits (243), Expect = 4e-21
 Identities = 42/63 (66%), Positives = 53/63 (84%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVI NRE+H G+F+ +HV+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+
Sbjct: 192 GVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4X_MACFU (Q76MY1) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 98.2 bits (243), Expect = 4e-21
 Identities = 42/63 (66%), Positives = 53/63 (84%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVI NRE+H G+F+ +HV+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+
Sbjct: 192 GVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4X_HUMAN (P62701) 40S ribosomal protein S4, X isoform (Single copy abundant|
           mRNA protein) (SCR10)
          Length = 262

 Score = 98.2 bits (243), Expect = 4e-21
 Identities = 42/63 (66%), Positives = 53/63 (84%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVI NRE+H G+F+ +HV+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+
Sbjct: 192 GVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4X_FELCA (P62705) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 98.2 bits (243), Expect = 4e-21
 Identities = 42/63 (66%), Positives = 53/63 (84%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVI NRE+H G+F+ +HV+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+
Sbjct: 192 GVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4X_CERAE (Q76N24) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 98.2 bits (243), Expect = 4e-21
 Identities = 42/63 (66%), Positives = 53/63 (84%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVI NRE+H G+F+ +HV+DA G+ FATRL N+F IGKG KPW+SLP+GKGI+LTI EE+
Sbjct: 192 GVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4X_BRARE (Q642H9) 40S ribosomal protein S4, X isoform|
          Length = 262

 Score = 97.1 bits (240), Expect = 9e-21
 Identities = 42/63 (66%), Positives = 53/63 (84%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVI NREKH G+F+ +HV+D+ G+ FATRL N+F IGKG KPWVSLP+GKG++LTI EE+
Sbjct: 192 GVITNREKHPGSFDVVHVKDSIGNSFATRLSNIFVIGKGNKPWVSLPRGKGVRLTIAEER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4Y1_HUMAN (P22090) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 95.9 bits (237), Expect = 2e-20
 Identities = 40/63 (63%), Positives = 52/63 (82%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVI NRE+H G+F+ +HV+DA G+ FATRL N+F IG G KPW+SLP+GKGI+LT+ EE+
Sbjct: 192 GVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAEER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4Y1_PONPY (Q861U7) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 95.5 bits (236), Expect = 3e-20
 Identities = 40/63 (63%), Positives = 52/63 (82%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVI NRE+H G+F+ +HV+DA G+ FATR+ N+F IG G KPW+SLP+GKGI+LTI EE+
Sbjct: 192 GVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4Y1_MACFU (P79183) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 95.5 bits (236), Expect = 3e-20
 Identities = 40/63 (63%), Positives = 52/63 (82%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVI NRE+H G+F+ +HV+DA G+ FATR+ N+F IG G KPW+SLP+GKGI+LTI EE+
Sbjct: 192 GVITNRERHPGSFDVVHVKDASGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4Y1_GORGO (Q861U8) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 95.1 bits (235), Expect = 4e-20
 Identities = 39/63 (61%), Positives = 52/63 (82%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVI NRE+H G+F+ +HV+DA G+ FATR+ N+F IG G KPW+SLP+GKGI+LT+ EE+
Sbjct: 192 GVITNRERHPGSFDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTVAEER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4_DROME (P41042) 40S ribosomal protein S4|
          Length = 261

 Score = 94.0 bits (232), Expect = 8e-20
 Identities = 40/63 (63%), Positives = 53/63 (84%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           G + NRE+H G+F+ +H++D+QGH FATRL NVF IGKG KP++SLPKGKG+KL+I EE+
Sbjct: 193 GTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEER 252

Query: 213 RKR 205
            KR
Sbjct: 253 DKR 255

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>RS4Y1_PANTR (Q861U9) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 93.6 bits (231), Expect = 1e-19
 Identities = 39/63 (61%), Positives = 51/63 (80%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVI NRE+H G+F+ +HV+DA G+ FATRL N+F IG G KPW+SLP+GKGI+LT+  E+
Sbjct: 192 GVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAAER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4Y1_PANPA (Q861V0) 40S ribosomal protein S4, Y isoform 1|
          Length = 262

 Score = 93.6 bits (231), Expect = 1e-19
 Identities = 39/63 (61%), Positives = 51/63 (80%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVI NRE+H G+F+ +HV+DA G+ FATRL N+F IG G KPW+SLP+GKGI+LT+  E+
Sbjct: 192 GVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGNGNKPWISLPRGKGIRLTVAAER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4_ICTPU (Q90YS0) 40S ribosomal protein S4|
          Length = 262

 Score = 93.2 bits (230), Expect = 1e-19
 Identities = 40/63 (63%), Positives = 52/63 (82%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVI NRE+H G+F+ +HV+D+ G+ FATRL N+F IGKG K WVS+P+GKGI+LTI EE+
Sbjct: 192 GVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKAWVSIPRGKGIRLTIAEER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4Y2_HUMAN (Q8TD47) 40S ribosomal protein S4, Y isoform 2|
          Length = 262

 Score = 92.4 bits (228), Expect = 2e-19
 Identities = 39/63 (61%), Positives = 51/63 (80%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GVI NRE+H G+ + +HV+DA G+ FATR+ N+F IG G KPW+SLP+GKGI+LTI EE+
Sbjct: 192 GVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4Y2_PANTR (Q6GVM7) 40S ribosomal protein S4, Y isoform 2|
          Length = 262

 Score = 92.0 bits (227), Expect = 3e-19
 Identities = 38/63 (60%), Positives = 51/63 (80%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           GV+ NRE+H G+ + +HV+DA G+ FATR+ N+F IG G KPW+SLP+GKGI+LTI EE+
Sbjct: 192 GVVTNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>RS4B_SCHPO (Q9USW5) 40S ribosomal protein S4-B|
          Length = 262

 Score = 82.8 bits (203), Expect = 2e-16
 Identities = 38/63 (60%), Positives = 48/63 (76%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           G I +RE H G+FE IHV+DA   +FATRL NVF IG+  K W+SLPKGKG+KL+I EE+
Sbjct: 193 GTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEER 252

Query: 213 RKR 205
            +R
Sbjct: 253 DRR 255

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>RS4C_SCHPO (Q9P4W9) 40S ribosomal protein S4-C|
          Length = 262

 Score = 82.0 bits (201), Expect = 3e-16
 Identities = 38/63 (60%), Positives = 48/63 (76%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           G I +RE H G+FE IHV+DA   +FATRL NVF IG+  K W+SLPKGKG+KL+I EE+
Sbjct: 193 GTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEER 252

Query: 213 RKR 205
            +R
Sbjct: 253 DRR 255

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>RS4A_SCHPO (P87158) 40S ribosomal protein S4-A|
          Length = 262

 Score = 82.0 bits (201), Expect = 3e-16
 Identities = 38/63 (60%), Positives = 48/63 (76%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           G I +RE H G+FE IHV+DA   +FATRL NVF IG+  K W+SLPKGKG+KL+I EE+
Sbjct: 193 GTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEER 252

Query: 213 RKR 205
            +R
Sbjct: 253 DRR 255

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>RS4_YARLI (O59950) 40S ribosomal protein S4 (S7)|
          Length = 260

 Score = 79.0 bits (193), Expect = 3e-15
 Identities = 36/63 (57%), Positives = 48/63 (76%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           G I +RE+H+G F+ +H++DA  +QF TRL NVF IG+G K  +SLPKGKGIKL+I EE+
Sbjct: 193 GTITHRERHEGGFDIVHIKDALDNQFVTRLTNVFVIGEGNKSLISLPKGKGIKLSIAEER 252

Query: 213 RKR 205
             R
Sbjct: 253 DAR 255

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>RS4_CANAL (P47837) 40S ribosomal protein S4 (S7)|
          Length = 262

 Score = 76.6 bits (187), Expect = 1e-14
 Identities = 38/64 (59%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIG-KGTKPWVSLPKGKGIKLTIIEE 217
           GVI +REK +G F+ +H++DA  + F TRL NVF IG +  KPWVSLPKGKGIKL+I EE
Sbjct: 193 GVIVHREKLEGGFDLVHIKDALENTFVTRLSNVFVIGTEAGKPWVSLPKGKGIKLSISEE 252

Query: 216 QRKR 205
           + +R
Sbjct: 253 RDRR 256

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>RS4_DICDI (P51405) 40S ribosomal protein S4|
          Length = 266

 Score = 76.3 bits (186), Expect = 2e-14
 Identities = 32/60 (53%), Positives = 46/60 (76%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           G + +REKH G+F+ +HV D  GHQFATRL NVF IGK ++ +VSLP GKG++ + ++E+
Sbjct: 192 GAVTHREKHPGSFDIVHVTDTAGHQFATRLSNVFIIGKASQTFVSLPAGKGVRRSRVDER 251

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>RS4_YEAST (P05753) 40S ribosomal protein S4 (S7) (YS6) (RP5)|
          Length = 260

 Score = 75.9 bits (185), Expect = 2e-14
 Identities = 33/63 (52%), Positives = 48/63 (76%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           G I ++E+H G F+ +H++D+  + F TRL NVF IG+  KP++SLPKGKGIKL+I EE+
Sbjct: 192 GTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSIAEER 251

Query: 213 RKR 205
            +R
Sbjct: 252 DRR 254

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>RS4_CAEEL (Q9N3X2) 40S ribosomal protein S4|
          Length = 259

 Score = 75.5 bits (184), Expect = 3e-14
 Identities = 35/63 (55%), Positives = 46/63 (73%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPKGKGIKLTIIEEQ 214
           G+I +RE+  G  + IH++D+ GH FATR+ NVF IGKG K  VSLP G GI+L+I EE+
Sbjct: 192 GIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSIAEER 251

Query: 213 RKR 205
            KR
Sbjct: 252 DKR 254

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>FOSB_BACLD (Q65KJ5) Metallothiol transferase fosB (EC 2.5.1.-) (Fosfomycin|
           resistance protein)
          Length = 154

 Score = 35.0 bits (79), Expect = 0.043
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = -3

Query: 390 VIKNREKHKGTFETIHVEDAQGHQFATRLGNVF---TIGKGTKPWVSLPKG 247
           V+K R++H+G  ++I+  D  GH+F    G+VF      +  KP +S  +G
Sbjct: 94  VLKGRKRHEGDRDSIYFSDPDGHKFELHTGSVFDRLQYYQNEKPHLSFHEG 144

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>RS4_HORSE (P55832) 40S ribosomal protein S4 (Fragment)|
          Length = 194

 Score = 35.0 bits (79), Expect = 0.043
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDA 331
           GVI NRE+H G+F+ +HV+DA
Sbjct: 174 GVITNRERHPGSFDVVHVKDA 194

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>RS4_BOVIN (P79103) 40S ribosomal protein S4 (Fragment)|
          Length = 194

 Score = 35.0 bits (79), Expect = 0.043
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = -3

Query: 393 GVIKNREKHKGTFETIHVEDA 331
           GVI NRE+H G+F+ +HV+DA
Sbjct: 174 GVITNRERHPGSFDVVHVKDA 194

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>Y977_HAEDU (Q7VMJ8) UPF0078 membrane protein HD_0977|
          Length = 199

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
 Frame = +1

Query: 286 NGEH------VAQTGGKLVTLGILNVDGLKGSLMLL 375
           NG H      V + GGKL  +G+L  D LKGSL +L
Sbjct: 36  NGSHNPGATNVLRNGGKLAAIGVLLFDTLKGSLPVL 71

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>LEU1_SOYBN (Q39891) Probable 2-isopropylmalate synthase (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
           (Late nodulin 56) (N-56)
          Length = 565

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = -3

Query: 372 KHKGTFETIHVEDAQGHQFATRLGNV 295
           KHKGT+ETI  E+  GH+  TR+G V
Sbjct: 345 KHKGTYETISPEEI-GHKRTTRIGIV 369

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>YCGV_ECO57 (Q8X583) Hypothetical protein ycgV|
          Length = 547

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 363 GTFETIHVEDAQGHQFATRLGNVFTIGKGTKPW 265
           GTF T++VE+  G+       +V   G G KPW
Sbjct: 514 GTFTTLNVENLSGNSTFIMRADVVGEGNGVKPW 546

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>EPN1_MOUSE (Q80VP1) Epsin-1 (EPS-15-interacting protein 1)|
           (Intersectin-EH-binding protein 1) (Ibp1)
          Length = 566

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +3

Query: 249 PWGGSPKAWCPCQW*TRCPDGWQTGDPGHPQRGWSQRFPYA 371
           PWGG+P    P       PD W + D G P  G     P+A
Sbjct: 324 PWGGTP---APAAGEGPTPDPWGSSDGGAPVSGPPSSDPWA 361

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>RS4E_PYRKO (Q5JJG0) 30S ribosomal protein S4e|
          Length = 243

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 390 VIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLP 253
           +++ R+   G  + + +ED  G  F T     F IGK  KP +SLP
Sbjct: 199 IVEVRQFPMGWPDVVTIEDENGELFDTLKEYAFVIGK-DKPEISLP 243

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>ACHA5_PANTR (Q5IS51) Neuronal acetylcholine receptor protein, alpha-5 subunit|
           precursor
          Length = 468

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +2

Query: 320 W*PWASSTWMVSKVPLCFSLFLITP 394
           W P+ + ++++ ++PL ++LFLI P
Sbjct: 236 WYPYVTYSFVIKRLPLFYTLFLIIP 260

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>ACHA5_HUMAN (P30532) Neuronal acetylcholine receptor protein, alpha-5 subunit|
           precursor
          Length = 468

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +2

Query: 320 W*PWASSTWMVSKVPLCFSLFLITP 394
           W P+ + ++++ ++PL ++LFLI P
Sbjct: 236 WYPYVTYSFVIKRLPLFYTLFLIIP 260

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>MEGF8_MOUSE (P60882) Multiple epidermal growth factor-like domains 8 (EGF-like|
            domain-containing protein 4) (Multiple EGF-like domain
            protein 4)
          Length = 2330

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +3

Query: 159  QCLRIRPWQQPELRHPSSSAPQ*W*A*YPCPWGGSPKAWCP-CQW*TRCPDGWQTGDPG 332
            +C R+R   +   RHP +  P            G  +A  P C+W T CP+G   G  G
Sbjct: 1409 ECRRLRTCSECLARHPRTLQP------------GDGEASIPRCKWCTNCPEGACIGRNG 1455

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>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like|
            domain-containing protein 4) (Multiple EGF-like domain
            protein 4)
          Length = 2386

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +3

Query: 159  QCLRIRPWQQPELRHPSSSAPQ*W*A*YPCPWGGSPKAWCP-CQW*TRCPDGWQTGDPG 332
            +C R+R   +   RHP +  P            G  +A  P C+W T CP+G   G  G
Sbjct: 1465 ECRRLRTCSECLARHPRTLQP------------GDGEASTPRCKWCTNCPEGACIGRNG 1511

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>COHA1_CANFA (Q9N281) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen|
           2) (180 kDa bullous pemphigoid antigen 2) (Fragment)
          Length = 709

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 249 PWGGSPKAWCPC 284
           PWG +P AWCPC
Sbjct: 449 PWGAAP-AWCPC 459

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>ACHA5_RAT (P20420) Neuronal acetylcholine receptor protein, alpha-5 subunit|
           precursor
          Length = 452

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +2

Query: 320 W*PWASSTWMVSKVPLCFSLFLITP 394
           W P+ + ++++ ++PL ++LFLI P
Sbjct: 221 WYPYITYSFVIKRLPLFYTLFLIIP 245

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>ACHA5_CHICK (P26152) Neuronal acetylcholine receptor protein, alpha-5 subunit|
           precursor
          Length = 454

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = +2

Query: 320 W*PWASSTWMVSKVPLCFSLFLITP 394
           W P+ + ++++ ++PL ++LFLI P
Sbjct: 222 WYPFVTYSFIIRRLPLFYTLFLIIP 246


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,910,870
Number of Sequences: 219361
Number of extensions: 1204161
Number of successful extensions: 3310
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 3202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3309
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result