Clone Name | rbart52b03 |
---|---|
Clone Library Name | barley_pub |
>dbj|AB181482.1| Bromus inermis BiRP1 mRNA for ribosomal protein, complete cds Length = 1053 Score = 547 bits (276), Expect = e-153 Identities = 346/368 (94%), Gaps = 1/368 (0%) Strand = Plus / Minus Query: 28 taaacatccacattacatctagcagcatccatgggttcgcaaatcaacaaacatcaggca 87 ||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| Sbjct: 1036 taaacatccacattacatctagcagcaaccatgggttcacaattcaacaaacatcaggca 977 Query: 88 aaacttaaaaaagatggttccaggaacatagttctatatccttgcagataactggctata 147 ||| ||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct: 976 aaatttaaaaacgatggttccagaaacatagttctatatcctt-cagataactggctata 918 Query: 148 gcaaaacgactcaatgcctcagaatcaggccttggcagcagcctgagctgcggcatccct 207 ||||||||| |||| |||||||||||||||||||||||| ||||| || ||||||||||| Sbjct: 917 gcaaaacgaatcaacgcctcagaatcaggccttggcagctgcctgggcagcggcatccct 858 Query: 208 cttcctctgctcctcaatgatggtgagcttgatacccttgcccttggggaggctcaccca 267 |||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||| Sbjct: 857 cttcctctgctcctcaatgatggtcagcttgatacctttgcccttggggagggtcaccca 798 Query: 268 aggcttggtgcccttgccaatggtgaacacgttgcccagacgggtggcaaactggtgacc 327 ||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||| Sbjct: 797 cggcttggtgcccttgccgatggtgaacacattgcctagacgggtggcgaactggtgacc 738 Query: 328 ctgggcatcctcaacgtggatggtctcaaaggttcccttatgcttctccctgttcttgat 387 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 737 ctgagcatcctcaacgtggatggtctcgaaggttcccttatgcttctccctgttcttgat 678 Query: 388 cacaccaa 395 |||||||| Sbjct: 677 cacaccaa 670
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 280 bits (141), Expect = 3e-72 Identities = 198/217 (91%) Strand = Plus / Plus Query: 179 ttggcagcagcctgagctgcggcatccctcttcctctgctcctcaatgatggtgagcttg 238 |||||||||||||| || || ||||||| |||||| |||||||| |||||| |||||||| Sbjct: 316967 ttggcagcagcctgggcggcagcatcccgcttcctttgctcctcgatgatgctgagcttg 317026 Query: 239 atacccttgcccttggggaggctcacccaaggcttggtgcccttgccaatggtgaacacg 298 || |||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct: 317027 atgcccttgcccttgggcaggctcacccaaggcttgttgcccttgccaatggtgaacaca 317086 Query: 299 ttgcccagacgggtggcaaactggtgaccctgggcatcctcaacgtggatggtctcaaag 358 ||||||||||||||||| || ||||| ||| ||||||||||||||||||||||||| ||| Sbjct: 317087 ttgcccagacgggtggcgaattggtggcccagggcatcctcaacgtggatggtctcgaag 317146 Query: 359 gttcccttatgcttctccctgttcttgatcacaccaa 395 | || ||||||||||||||||||||||||||||||| Sbjct: 317147 ctgcctttatgcttctccctgttcttgatcacaccaa 317183 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 115 atagttctatatccttgcagataactggctatagcaaaac 154 ||||||||||||||||||| | |||| ||||||||||||| Sbjct: 316896 atagttctatatccttgcaaacaactcgctatagcaaaac 316935
>dbj|AP004851.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1359_D06 Length = 146805 Score = 280 bits (141), Expect = 3e-72 Identities = 198/217 (91%) Strand = Plus / Plus Query: 179 ttggcagcagcctgagctgcggcatccctcttcctctgctcctcaatgatggtgagcttg 238 |||||||||||||| || || ||||||| |||||| |||||||| |||||| |||||||| Sbjct: 45751 ttggcagcagcctgggcggcagcatcccgcttcctttgctcctcgatgatgctgagcttg 45810 Query: 239 atacccttgcccttggggaggctcacccaaggcttggtgcccttgccaatggtgaacacg 298 || |||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct: 45811 atgcccttgcccttgggcaggctcacccaaggcttgttgcccttgccaatggtgaacaca 45870 Query: 299 ttgcccagacgggtggcaaactggtgaccctgggcatcctcaacgtggatggtctcaaag 358 ||||||||||||||||| || ||||| ||| ||||||||||||||||||||||||| ||| Sbjct: 45871 ttgcccagacgggtggcgaattggtggcccagggcatcctcaacgtggatggtctcgaag 45930 Query: 359 gttcccttatgcttctccctgttcttgatcacaccaa 395 | || ||||||||||||||||||||||||||||||| Sbjct: 45931 ctgcctttatgcttctccctgttcttgatcacaccaa 45967 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Plus Query: 115 atagttctatatccttgcagataactggctatagcaaaac 154 ||||||||||||||||||| | |||| ||||||||||||| Sbjct: 45680 atagttctatatccttgcaaacaactcgctatagcaaaac 45719
>dbj|AK103949.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-B09, full insert sequence Length = 1016 Score = 280 bits (141), Expect = 3e-72 Identities = 198/217 (91%) Strand = Plus / Minus Query: 179 ttggcagcagcctgagctgcggcatccctcttcctctgctcctcaatgatggtgagcttg 238 |||||||||||||| || || ||||||| |||||| |||||||| |||||| |||||||| Sbjct: 886 ttggcagcagcctgggcggcagcatcccgcttcctttgctcctcgatgatgctgagcttg 827 Query: 239 atacccttgcccttggggaggctcacccaaggcttggtgcccttgccaatggtgaacacg 298 || |||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct: 826 atgcccttgcccttgggcaggctcacccaaggcttgttgcccttgccaatggtgaacaca 767 Query: 299 ttgcccagacgggtggcaaactggtgaccctgggcatcctcaacgtggatggtctcaaag 358 ||||||||||||||||| || ||||| ||| ||||||||||||||||||||||||| ||| Sbjct: 766 ttgcccagacgggtggcgaattggtggcccagggcatcctcaacgtggatggtctcgaag 707 Query: 359 gttcccttatgcttctccctgttcttgatcacaccaa 395 | || ||||||||||||||||||||||||||||||| Sbjct: 706 ctgcctttatgcttctccctgttcttgatcacaccaa 670 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 115 atagttctatatccttgcagataactggctatagcaaaac 154 ||||||||||||||||||| | |||| ||||||||||||| Sbjct: 957 atagttctatatccttgcaaacaactcgctatagcaaaac 918
>dbj|AK102423.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093E13, full insert sequence Length = 1157 Score = 280 bits (141), Expect = 3e-72 Identities = 198/217 (91%) Strand = Plus / Minus Query: 179 ttggcagcagcctgagctgcggcatccctcttcctctgctcctcaatgatggtgagcttg 238 |||||||||||||| || || ||||||| |||||| |||||||| |||||| |||||||| Sbjct: 890 ttggcagcagcctgggcggcagcatcccgcttcctttgctcctcgatgatgctgagcttg 831 Query: 239 atacccttgcccttggggaggctcacccaaggcttggtgcccttgccaatggtgaacacg 298 || |||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct: 830 atgcccttgcccttgggcaggctcacccaaggcttgttgcccttgccaatggtgaacaca 771 Query: 299 ttgcccagacgggtggcaaactggtgaccctgggcatcctcaacgtggatggtctcaaag 358 ||||||||||||||||| || ||||| ||| ||||||||||||||||||||||||| ||| Sbjct: 770 ttgcccagacgggtggcgaattggtggcccagggcatcctcaacgtggatggtctcgaag 711 Query: 359 gttcccttatgcttctccctgttcttgatcacaccaa 395 | || ||||||||||||||||||||||||||||||| Sbjct: 710 ctgcctttatgcttctccctgttcttgatcacaccaa 674 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 115 atagttctatatccttgcagataactggctatagcaaaac 154 ||||||||||||||||||| | |||| ||||||||||||| Sbjct: 961 atagttctatatccttgcaaacaactcgctatagcaaaac 922
>dbj|AK061776.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-D06, full insert sequence Length = 1079 Score = 272 bits (137), Expect = 8e-70 Identities = 197/217 (90%) Strand = Plus / Minus Query: 179 ttggcagcagcctgagctgcggcatccctcttcctctgctcctcaatgatggtgagcttg 238 |||||||||||||| || || ||||||| |||||| |||||||| |||||| |||||||| Sbjct: 882 ttggcagcagcctgggcggcagcatcccgcttcctttgctcctcgatgatgctgagcttg 823 Query: 239 atacccttgcccttggggaggctcacccaaggcttggtgcccttgccaatggtgaacacg 298 || |||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 822 atgcccttgcccttgggcaggctcacccaaggcttgttgcccttgccaatggtgaacaaa 763 Query: 299 ttgcccagacgggtggcaaactggtgaccctgggcatcctcaacgtggatggtctcaaag 358 ||||||||||||||||| || ||||| ||| ||||||||||||||||||||||||| ||| Sbjct: 762 ttgcccagacgggtggcgaattggtggcccagggcatcctcaacgtggatggtctcgaag 703 Query: 359 gttcccttatgcttctccctgttcttgatcacaccaa 395 | || ||||||||||||||||||||||||||||||| Sbjct: 702 ctgcctttatgcttctccctgttcttgatcacaccaa 666 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 115 atagttctatatccttgcagataactggctatagcaaaac 154 ||||||||||||||||||| | |||| ||||||||||||| Sbjct: 953 atagttctatatccttgcaaacaactcgctatagcaaaac 914
>emb|Y15009.1|OSY15009 Oryza sativa mRNA for ribosomal protein S4 Length = 1148 Score = 224 bits (113), Expect = 2e-55 Identities = 194/217 (89%), Gaps = 3/217 (1%) Strand = Plus / Minus Query: 179 ttggcagcagcctgagctgcggcatccctcttcctctgctcct-caatgatggtgagctt 237 |||||||||||||| || || || |||| |||||| ||||||| | |||||| ||||||| Sbjct: 865 ttggcagcagcctgggcggccgc-tcccgcttcctttgctccttcgatgatgctgagctt 807 Query: 238 gatacccttgcccttggggaggctcacccaaggcttggtgcccttgccaatggtgaacac 297 ||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||| Sbjct: 806 gatgcccttgcccttgggcaggctcacccaaggcttgttgcccttgccaatggtgaacac 747 Query: 298 gttgcccagacgggtggcaaactggtgaccctgggcatcctcaacgtggatggtctcaaa 357 ||||||||||||||||| || ||||| ||| ||||||||||||||||||||||||| || Sbjct: 746 attgcccagacgggtggcgaattggtggcccagggcatcctcaacgtggatggtctcgaa 687 Query: 358 ggttcccttatgcttctccctgttcttgatcacacca 394 | | |||| |||||||||||||| |||||||||||| Sbjct: 686 -gctgccttttgcttctccctgttgttgatcacacca 651 Score = 42.1 bits (21), Expect = 1.3 Identities = 37/41 (90%), Gaps = 1/41 (2%) Strand = Plus / Minus Query: 115 atagttctatatcc-ttgcagataactggctatagcaaaac 154 |||||||||||||| ||||| | |||| ||||||||||||| Sbjct: 937 atagttctatatcctttgcaaacaactcgctatagcaaaac 897
>gb|AF013487.1|AF013487 Zea mays ribosomal protein S4 type I (rps4) mRNA, complete cds Length = 1013 Score = 212 bits (107), Expect = 6e-52 Identities = 188/215 (87%) Strand = Plus / Minus Query: 179 ttggcagcagcctgagctgcggcatccctcttcctctgctcctcaatgatggtgagcttg 238 |||||||||||||| || |||||||||| |||||| ||||| || |||||| | |||||| Sbjct: 864 ttggcagcagcctgggcagcggcatcccgcttcctttgctcttctatgatgctcagcttg 805 Query: 239 atacccttgcccttggggaggctcacccaaggcttggtgcccttgccaatggtgaacacg 298 || |||||||||||||| ||||||||||| ||||| | |||||||| |||||||||||| Sbjct: 804 attcccttgcccttgggcaggctcacccacggcttattacccttgccgatggtgaacacg 745 Query: 299 ttgcccagacgggtggcaaactggtgaccctgggcatcctcaacgtggatggtctcaaag 358 ||||||| ||||||||| |||||||| ||| ||| ||||| ||||| |||||||||||| Sbjct: 744 ttgcccatacgggtggcgaactggtggcccagggagtcctccacgtgaatggtctcaaag 685 Query: 359 gttcccttatgcttctccctgttcttgatcacacc 393 | ||||| |||||||||||||||||||| ||||| Sbjct: 684 ctgcccttgtgcttctccctgttcttgataacacc 650 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 111 gaacatagttctatatccttgcaga 135 |||||| |||||||||||||||||| Sbjct: 936 gaacattgttctatatccttgcaga 912
>gb|AY525608.1| Zea mays ribosomal protein S4 mRNA, complete cds Length = 1037 Score = 204 bits (103), Expect = 2e-49 Identities = 187/215 (86%) Strand = Plus / Minus Query: 179 ttggcagcagcctgagctgcggcatccctcttcctctgctcctcaatgatggtgagcttg 238 |||||||||||||| || |||||||||| |||||| ||||| || |||||| | |||||| Sbjct: 862 ttggcagcagcctgggcagcggcatcccgcttcctttgctcttctatgatgctcagcttg 803 Query: 239 atacccttgcccttggggaggctcacccaaggcttggtgcccttgccaatggtgaacacg 298 || |||||||||||||| ||||||||||| ||||| | |||||||| |||||||||||| Sbjct: 802 attcccttgcccttgggcaggctcacccacggcttattacccttgccgatggtgaacacg 743 Query: 299 ttgcccagacgggtggcaaactggtgaccctgggcatcctcaacgtggatggtctcaaag 358 ||||||| ||||||||| |||||||| ||| ||| ||||| ||||| |||||||||| | Sbjct: 742 ttgcccatacgggtggcgaactggtggcccagggagtcctccacgtgaatggtctcaagg 683 Query: 359 gttcccttatgcttctccctgttcttgatcacacc 393 | ||||| |||||||||||||||||||| ||||| Sbjct: 682 ctgcccttgtgcttctccctgttcttgataacacc 648 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 111 gaacatagttctatatccttgcaga 135 |||||| |||||||||||||||||| Sbjct: 934 gaacattgttctatatccttgcaga 910
>gb|BT016261.1| Zea mays clone Contig94 mRNA sequence Length = 1116 Score = 198 bits (100), Expect = 1e-47 Identities = 163/184 (88%) Strand = Plus / Minus Query: 210 tcctctgctcctcaatgatggtgagcttgatacccttgcccttggggaggctcacccaag 269 ||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||| | Sbjct: 865 tcctctgctcctcgatgatgctgagcttgatacccttgcccttgggcaggctcacccacg 806 Query: 270 gcttggtgcccttgccaatggtgaacacgttgcccagacgggtggcaaactggtgaccct 329 ||||| |||||||||| ||||||||||||||||||| |||||||| |||||||| ||| Sbjct: 805 gcttgttgcccttgccgatggtgaacacgttgcccatgcgggtggcgaactggtggccca 746 Query: 330 gggcatcctcaacgtggatggtctcaaaggttcccttatgcttctccctgttcttgatca 389 || ||||| ||||||||||| || ||| ||||| |||||||||||||||||||||| Sbjct: 745 tggagtcctcgacgtggatggtatcgaagccgcccttgtgcttctccctgttcttgatca 686 Query: 390 cacc 393 |||| Sbjct: 685 cacc 682
>gb|AF015522.1|AF015522 Zea mays ribsomal protein S4 (rps4) mRNA, complete cds Length = 1090 Score = 198 bits (100), Expect = 1e-47 Identities = 163/184 (88%) Strand = Plus / Minus Query: 210 tcctctgctcctcaatgatggtgagcttgatacccttgcccttggggaggctcacccaag 269 ||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||| | Sbjct: 844 tcctctgctcctcgatgatgctgagcttgatacccttgcccttgggcaggctcacccacg 785 Query: 270 gcttggtgcccttgccaatggtgaacacgttgcccagacgggtggcaaactggtgaccct 329 ||||| |||||||||| ||||||||||||||||||| |||||||| |||||||| ||| Sbjct: 784 gcttgttgcccttgccgatggtgaacacgttgcccatgcgggtggcgaactggtggccca 725 Query: 330 gggcatcctcaacgtggatggtctcaaaggttcccttatgcttctccctgttcttgatca 389 || ||||| ||||||||||| || ||| ||||| |||||||||||||||||||||| Sbjct: 724 tggagtcctcgacgtggatggtatcgaagccgcccttgtgcttctccctgttcttgatca 665 Query: 390 cacc 393 |||| Sbjct: 664 cacc 661
>gb|BT017558.1| Zea mays clone EL01N0424H12.c mRNA sequence Length = 1145 Score = 188 bits (95), Expect = 9e-45 Identities = 185/215 (86%) Strand = Plus / Plus Query: 179 ttggcagcagcctgagctgcggcatccctcttcctctgctcctcaatgatggtgagcttg 238 |||||||||||||| || || ||||||| |||||| ||||| || |||||| | |||||| Sbjct: 178 ttggcagcagcctgggcagcagcatcccgcttcctttgctcttctatgatgctcagcttg 237 Query: 239 atacccttgcccttggggaggctcacccaaggcttggtgcccttgccaatggtgaacacg 298 || ||||| |||||||| ||||||||||| ||||| | |||||||| |||||||||||| Sbjct: 238 attcccttacccttgggcaggctcacccacggcttattacccttgccgatggtgaacacg 297 Query: 299 ttgcccagacgggtggcaaactggtgaccctgggcatcctcaacgtggatggtctcaaag 358 ||||||| ||||||||| |||||||| ||| ||| ||||| ||||| || ||||||||| Sbjct: 298 ttgcccatacgggtggcgaactggtggcccagggagtcctccacgtgaatagtctcaaag 357 Query: 359 gttcccttatgcttctccctgttcttgatcacacc 393 | ||||| |||||||||||||||||||| ||||| Sbjct: 358 ctgcccttgtgcttctccctgttcttgataacacc 392 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 110 ggaacatagttctatatccttgcaga 135 ||||||| |||||||||||||||||| Sbjct: 105 ggaacattgttctatatccttgcaga 130
>ref|NM_193994.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 768 Score = 157 bits (79), Expect = 3e-35 Identities = 172/203 (84%) Strand = Plus / Minus Query: 182 gcagcagcctgagctgcggcatccctcttcctctgctcctcaatgatggtgagcttgata 241 |||||||||||||| || ||||| | ||||||||| ||||| |||||| ||||||||||| Sbjct: 758 gcagcagcctgagcagcagcatctcgcttcctctgttcctcgatgatgctgagcttgata 699 Query: 242 cccttgcccttggggaggctcacccaaggcttggtgcccttgccaatggtgaacacgttg 301 ||||||||||| ||||| |||||| |||||| |||||||||| ||||||||||| ||| Sbjct: 698 cccttgcccttagggagagacacccatggcttgttgcccttgccgatggtgaacacattg 639 Query: 302 cccagacgggtggcaaactggtgaccctgggcatcctcaacgtggatggtctcaaaggtt 361 |||||||||||||| || || ||| || ||||| || |||||||||||||| | Sbjct: 638 cccagacgggtggcgaaggcatggcccaatgcgtcctccacatggatggtctcaaaactg 579 Query: 362 cccttatgcttctccctgttctt 384 ||||| ||||||||||||||||| Sbjct: 578 cccttgtgcttctccctgttctt 556
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 157 bits (79), Expect = 3e-35 Identities = 172/203 (84%) Strand = Plus / Minus Query: 182 gcagcagcctgagctgcggcatccctcttcctctgctcctcaatgatggtgagcttgata 241 |||||||||||||| || ||||| | ||||||||| ||||| |||||| ||||||||||| Sbjct: 14497969 gcagcagcctgagcagcagcatctcgcttcctctgttcctcgatgatgctgagcttgata 14497910 Query: 242 cccttgcccttggggaggctcacccaaggcttggtgcccttgccaatggtgaacacgttg 301 ||||||||||| ||||| |||||| |||||| |||||||||| ||||||||||| ||| Sbjct: 14497909 cccttgcccttagggagagacacccatggcttgttgcccttgccgatggtgaacacattg 14497850 Query: 302 cccagacgggtggcaaactggtgaccctgggcatcctcaacgtggatggtctcaaaggtt 361 |||||||||||||| || || ||| || ||||| || |||||||||||||| | Sbjct: 14497849 cccagacgggtggcgaaggcatggcccaatgcgtcctccacatggatggtctcaaaactg 14497790 Query: 362 cccttatgcttctccctgttctt 384 ||||| ||||||||||||||||| Sbjct: 14497789 cccttgtgcttctccctgttctt 14497767
>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0514H03 Length = 167230 Score = 157 bits (79), Expect = 3e-35 Identities = 172/203 (84%) Strand = Plus / Minus Query: 182 gcagcagcctgagctgcggcatccctcttcctctgctcctcaatgatggtgagcttgata 241 |||||||||||||| || ||||| | ||||||||| ||||| |||||| ||||||||||| Sbjct: 57282 gcagcagcctgagcagcagcatctcgcttcctctgttcctcgatgatgctgagcttgata 57223 Query: 242 cccttgcccttggggaggctcacccaaggcttggtgcccttgccaatggtgaacacgttg 301 ||||||||||| ||||| |||||| |||||| |||||||||| ||||||||||| ||| Sbjct: 57222 cccttgcccttagggagagacacccatggcttgttgcccttgccgatggtgaacacattg 57163 Query: 302 cccagacgggtggcaaactggtgaccctgggcatcctcaacgtggatggtctcaaaggtt 361 |||||||||||||| || || ||| || ||||| || |||||||||||||| | Sbjct: 57162 cccagacgggtggcgaaggcatggcccaatgcgtcctccacatggatggtctcaaaactg 57103 Query: 362 cccttatgcttctccctgttctt 384 ||||| ||||||||||||||||| Sbjct: 57102 cccttgtgcttctccctgttctt 57080
>dbj|AK061826.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-C06, full insert sequence Length = 1035 Score = 157 bits (79), Expect = 3e-35 Identities = 172/203 (84%) Strand = Plus / Minus Query: 182 gcagcagcctgagctgcggcatccctcttcctctgctcctcaatgatggtgagcttgata 241 |||||||||||||| || ||||| | ||||||||| ||||| |||||| ||||||||||| Sbjct: 875 gcagcagcctgagcagcagcatctcgcttcctctgttcctcgatgatgctgagcttgata 816 Query: 242 cccttgcccttggggaggctcacccaaggcttggtgcccttgccaatggtgaacacgttg 301 ||||||||||| ||||| |||||| |||||| |||||||||| ||||||||||| ||| Sbjct: 815 cccttgcccttagggagagacacccatggcttgttgcccttgccgatggtgaacacattg 756 Query: 302 cccagacgggtggcaaactggtgaccctgggcatcctcaacgtggatggtctcaaaggtt 361 |||||||||||||| || || ||| || ||||| || |||||||||||||| | Sbjct: 755 cccagacgggtggcgaaggcatggcccaatgcgtcctccacatggatggtctcaaaactg 696 Query: 362 cccttatgcttctccctgttctt 384 ||||| ||||||||||||||||| Sbjct: 695 cccttgtgcttctccctgttctt 673
>gb|AF071891.1|AF071891 Prunus armeniaca 40S ribosomal protein S4 (RPS4) mRNA, complete cds Length = 1086 Score = 143 bits (72), Expect = 5e-31 Identities = 141/164 (85%) Strand = Plus / Minus Query: 221 tcaatgatggtgagcttgatacccttgcccttggggaggctcacccaaggcttggtgccc 280 |||| |||||| ||||||||||| || |||||||| || ||||||||| || || ||| Sbjct: 783 tcaaggatggttagcttgatacctttccccttgggaagagacacccaaggttttgtaccc 724 Query: 281 ttgccaatggtgaacacgttgcccagacgggtggcaaactggtgaccctgggcatcctca 340 ||||||||||||||||| || || || || || ||||||| |||||| |||||||| | Sbjct: 723 ttgccaatggtgaacacattaccaagccgagtagcaaactcgtgaccagtggcatcctga 664 Query: 341 acgtggatggtctcaaaggttcccttatgcttctccctgttctt 384 |||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 663 acgtggatggtctcaaagcttcccttatgcttctccctgttctt 620
>ref|XM_475130.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 738 Score = 133 bits (67), Expect = 5e-28 Identities = 154/183 (84%) Strand = Plus / Minus Query: 208 cttcctctgctcctcaatgatggtgagcttgatacccttgcccttggggaggctcaccca 267 ||||||| ||||||||||||| |||||||||| ||||||||||||||||| ||||| Sbjct: 708 cttcctcgcctcctcaatgatgctgagcttgatgcccttgcccttggggagagataccca 649 Query: 268 aggcttggtgcccttgccaatggtgaacacgttgcccagacgggtggcaaactggtgacc 327 ||||| | ||||||| |||||||| |||||||||| || || || |||||||| || Sbjct: 648 cggcttcctctccttgccgatggtgaagacgttgcccatgcgagtcgcgaactggtggcc 589 Query: 328 ctgggcatcctcaacgtggatggtctcaaaggttcccttatgcttctccctgttcttgat 387 |||||||||| || ||||||||||||||| | ||||| |||||||||||| ||||||| Sbjct: 588 gagggcatcctcgacatggatggtctcaaagctgcccttgtgcttctccctgctcttgat 529 Query: 388 cac 390 ||| Sbjct: 528 cac 526
>gb|AC104279.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1393_A07, complete sequence Length = 159932 Score = 133 bits (67), Expect = 5e-28 Identities = 154/183 (84%) Strand = Plus / Minus Query: 208 cttcctctgctcctcaatgatggtgagcttgatacccttgcccttggggaggctcaccca 267 ||||||| ||||||||||||| |||||||||| ||||||||||||||||| ||||| Sbjct: 81033 cttcctcgcctcctcaatgatgctgagcttgatgcccttgcccttggggagagataccca 80974 Query: 268 aggcttggtgcccttgccaatggtgaacacgttgcccagacgggtggcaaactggtgacc 327 ||||| | ||||||| |||||||| |||||||||| || || || |||||||| || Sbjct: 80973 cggcttcctctccttgccgatggtgaagacgttgcccatgcgagtcgcgaactggtggcc 80914 Query: 328 ctgggcatcctcaacgtggatggtctcaaaggttcccttatgcttctccctgttcttgat 387 |||||||||| || ||||||||||||||| | ||||| |||||||||||| ||||||| Sbjct: 80913 gagggcatcctcgacatggatggtctcaaagctgcccttgtgcttctccctgctcttgat 80854 Query: 388 cac 390 ||| Sbjct: 80853 cac 80851
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 133 bits (67), Expect = 5e-28 Identities = 154/183 (84%) Strand = Plus / Minus Query: 208 cttcctctgctcctcaatgatggtgagcttgatacccttgcccttggggaggctcaccca 267 ||||||| ||||||||||||| |||||||||| ||||||||||||||||| ||||| Sbjct: 17551228 cttcctcgcctcctcaatgatgctgagcttgatgcccttgcccttggggagagataccca 17551169 Query: 268 aggcttggtgcccttgccaatggtgaacacgttgcccagacgggtggcaaactggtgacc 327 ||||| | ||||||| |||||||| |||||||||| || || || |||||||| || Sbjct: 17551168 cggcttcctctccttgccgatggtgaagacgttgcccatgcgagtcgcgaactggtggcc 17551109 Query: 328 ctgggcatcctcaacgtggatggtctcaaaggttcccttatgcttctccctgttcttgat 387 |||||||||| || ||||||||||||||| | ||||| |||||||||||| ||||||| Sbjct: 17551108 gagggcatcctcgacatggatggtctcaaagctgcccttgtgcttctccctgctcttgat 17551049 Query: 388 cac 390 ||| Sbjct: 17551048 cac 17551046
>dbj|AK071862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123J20, full insert sequence Length = 1162 Score = 133 bits (67), Expect = 5e-28 Identities = 154/183 (84%) Strand = Plus / Minus Query: 208 cttcctctgctcctcaatgatggtgagcttgatacccttgcccttggggaggctcaccca 267 ||||||| ||||||||||||| |||||||||| ||||||||||||||||| ||||| Sbjct: 860 cttcctcgcctcctcaatgatgctgagcttgatgcccttgcccttggggagagataccca 801 Query: 268 aggcttggtgcccttgccaatggtgaacacgttgcccagacgggtggcaaactggtgacc 327 ||||| | ||||||| |||||||| |||||||||| || || || |||||||| || Sbjct: 800 cggcttcctctccttgccgatggtgaagacgttgcccatgcgagtcgcgaactggtggcc 741 Query: 328 ctgggcatcctcaacgtggatggtctcaaaggttcccttatgcttctccctgttcttgat 387 |||||||||| || ||||||||||||||| | ||||| |||||||||||| ||||||| Sbjct: 740 gagggcatcctcgacatggatggtctcaaagctgcccttgtgcttctccctgctcttgat 681 Query: 388 cac 390 ||| Sbjct: 680 cac 678
>gb|AC126779.19| Medicago truncatula clone mth2-34m14, complete sequence Length = 128856 Score = 123 bits (62), Expect = 5e-25 Identities = 170/206 (82%) Strand = Plus / Minus Query: 190 ctgagctgcggcatccctcttcctctgctcctcaatgatggtgagcttgatacccttgcc 249 ||||||||| ||| |||||||||| |||||||||| || | || |||||||| || Sbjct: 83725 ctgagctgcagcagccctcttcctagcttcctcaatgacagttaatttaatacccttacc 83666 Query: 250 cttggggaggctcacccaaggcttggtgcccttgccaatggtgaacacgttgcccagacg 309 |||||| || ||||| ||||| || ||||||||||| |||||||| ||| ||||||| Sbjct: 83665 cttgggaagagatacccatggctttgtccccttgccaatagtgaacacattgaccagacg 83606 Query: 310 ggtggcaaactggtgaccctgggcatcctcaacgtggatggtctcaaaggttcccttatg 369 || ||||||| ||||| |||||||| ||||||||| |||||||||||||||||||| Sbjct: 83605 agttgcaaactcatgaccagtggcatcctgaacgtggattgtctcaaaggttcccttatg 83546 Query: 370 cttctccctgttcttgatcacaccaa 395 ||| || |||||||||||||| |||| Sbjct: 83545 cttttctctgttcttgatcactccaa 83520
>dbj|AB232685.1| Panax ginseng mRNA for ribosomal protein S4, complete cds Length = 1105 Score = 85.7 bits (43), Expect = 1e-13 Identities = 139/171 (81%) Strand = Plus / Minus Query: 217 ctcctcaatgatggtgagcttgatacccttgcccttggggaggctcacccaaggcttggt 276 ||||||||||||||| | |||||||||||||||||||| || |||||| ||||| || Sbjct: 840 ctcctcaatgatggttaatttgatacccttgcccttgggaagagacacccatggctttgt 781 Query: 277 gcccttgccaatggtgaacacgttgcccagacgggtggcaaactggtgaccctgggcatc 336 || || || ||||| || || ||||| ||||| || ||||||| |||||| ||| ||| Sbjct: 780 accttttccgatggtaaaaacattgcctagacgagtagcaaactcgtgaccaagggaatc 721 Query: 337 ctcaacgtggatggtctcaaaggttcccttatgcttctccctgttcttgat 387 || || ||| | ||||| ||| | |||||||| ||||||||||||||||| Sbjct: 720 ctgaatgtgaacagtctcgaagctccccttatgtttctccctgttcttgat 670
>emb|X76651.1|STRPS4 S.tuberosum (Desiree) mRNA for ribosomal protein S4 Length = 966 Score = 81.8 bits (41), Expect = 2e-12 Identities = 110/133 (82%) Strand = Plus / Minus Query: 263 acccaaggcttggtgcccttgccaatggtgaacacgttgcccagacgggtggcaaactgg 322 ||||| ||||| || ||||| |||| |||||||| || |||| ||| || ||||| | Sbjct: 756 acccacggcttagtacccttaccaagagtgaacacatttcccaaacgtgtagcaaattca 697 Query: 323 tgaccctgggcatcctcaacgtggatggtctcaaaggttcccttatgcttctccctgttc 382 |||||||| | ||||| || ||||| |||||||||| | ||||||||||||||||||||| Sbjct: 696 tgaccctgtgaatcctgaatgtggagggtctcaaagctacccttatgcttctccctgttc 637 Query: 383 ttgatcacaccaa 395 || || ||||||| Sbjct: 636 ttaataacaccaa 624
>gb|AF528526.1| Glycine max 40S ribosomal S4 protein mRNA, complete cds Length = 1054 Score = 77.8 bits (39), Expect = 2e-11 Identities = 105/127 (82%) Strand = Plus / Minus Query: 269 ggcttggtgcccttgccaatggtgaacacgttgcccagacgggtggcaaactggtgaccc 328 ||||| |||||||||||||| |||||||| ||||||| || || ||||| | || || Sbjct: 798 ggctttgtgcccttgccaatagtgaacacattgcccatgcgagtagcaaattcatgtcca 739 Query: 329 tgggcatcctcaacgtggatggtctcaaaggttcccttatgcttctccctgttcttgatc 388 || ||||| ||||| || ||||||||| | ||||||||||||||||||||||||||| Sbjct: 738 gtggaatcctgcacgtgaattgtctcaaagctacccttatgcttctccctgttcttgatc 679 Query: 389 acaccaa 395 || |||| Sbjct: 678 actccaa 672
>gb|DQ268839.1| Solanum tuberosum clone 130D11 40S ribosomal protein S4-like protein mRNA, complete cds Length = 1052 Score = 73.8 bits (37), Expect = 4e-10 Identities = 109/133 (81%) Strand = Plus / Minus Query: 263 acccaaggcttggtgcccttgccaatggtgaacacgttgcccagacgggtggcaaactgg 322 ||||| ||||| || ||||| |||| |||||||| || |||| ||| || ||||| | Sbjct: 739 acccacggcttagtacccttaccaagagtgaacacatttcccaaacgtgtagcaaattca 680 Query: 323 tgaccctgggcatcctcaacgtggatggtctcaaaggttcccttatgcttctccctgttc 382 |||||||| | ||| | || ||||| |||||||||| | ||||||||||||||||||||| Sbjct: 679 tgaccctgtgaatcttgaatgtggagggtctcaaagctacccttatgcttctccctgttc 620 Query: 383 ttgatcacaccaa 395 || || ||||||| Sbjct: 619 ttaataacaccaa 607
>gb|AY110862.1| Zea mays CL1882_8 mRNA sequence Length = 728 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 341 acgtggatggtctcaaaggttcccttatgcttctccctgttcttgatcac 390 |||||||||||||| ||| | ||||| ||||||||||||||||||||||| Sbjct: 491 acgtggatggtctcgaagctgcccttgtgcttctccctgttcttgatcac 442 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 cttctccctgttcttgatcac 390 ||||||||||||||||||||| Sbjct: 429 cttctccctgttcttgatcac 409
>emb|BX832253.1|CNS09ZUO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH61ZB04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 945 Score = 61.9 bits (31), Expect = 1e-06 Identities = 46/51 (90%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacacc 393 |||||| ||||||||||||||||||||||| || | |||||| |||||||| Sbjct: 625 gtggattgtctcaaaggttcccttatgcttttcacggttcttaatcacacc 575
>ref|NM_125228.3| Arabidopsis thaliana structural constituent of ribosome AT5G58420 mRNA, complete cds Length = 1080 Score = 58.0 bits (29), Expect = 2e-05 Identities = 68/81 (83%) Strand = Plus / Minus Query: 217 ctcctcaatgatggtgagcttgatacccttgcccttggggaggctcacccaaggcttggt 276 |||||| ||||| || ||||||||||| ||||||||||| || |||||| ||||| || Sbjct: 846 ctcctcgatgatagtcagcttgatacctttgcccttgggaagagacacccatggctttgt 787 Query: 277 gcccttgccaatggtgaacac 297 || |||||||||||| |||| Sbjct: 786 tcctttgccaatggtgtacac 766 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacaccaa 395 |||||| ||||||||| |||||||||||||||| | ||| || |||||||||| Sbjct: 720 gtggattgtctcaaagcttcccttatgcttctcacggtttttaatcacaccaa 668
>gb|AY143834.1| Arabidopsis thaliana At5g58420/mqj2_10 mRNA, complete cds Length = 789 Score = 58.0 bits (29), Expect = 2e-05 Identities = 68/81 (83%) Strand = Plus / Minus Query: 217 ctcctcaatgatggtgagcttgatacccttgcccttggggaggctcacccaaggcttggt 276 |||||| ||||| || ||||||||||| ||||||||||| || |||||| ||||| || Sbjct: 753 ctcctcgatgatagtcagcttgatacctttgcccttgggaagagacacccatggctttgt 694 Query: 277 gcccttgccaatggtgaacac 297 || |||||||||||| |||| Sbjct: 693 tcctttgccaatggtgtacac 673 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacaccaa 395 |||||| ||||||||| |||||||||||||||| | ||| || |||||||||| Sbjct: 627 gtggattgtctcaaagcttcccttatgcttctcacggtttttaatcacaccaa 575
>gb|AY070467.1| Arabidopsis thaliana AT5g58420/mqj2_10 mRNA, complete cds Length = 995 Score = 58.0 bits (29), Expect = 2e-05 Identities = 68/81 (83%) Strand = Plus / Minus Query: 217 ctcctcaatgatggtgagcttgatacccttgcccttggggaggctcacccaaggcttggt 276 |||||| ||||| || ||||||||||| ||||||||||| || |||||| ||||| || Sbjct: 826 ctcctcgatgatagtcagcttgatacctttgcccttgggaagagacacccatggctttgt 767 Query: 277 gcccttgccaatggtgaacac 297 || |||||||||||| |||| Sbjct: 766 tcctttgccaatggtgtacac 746 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacaccaa 395 |||||| ||||||||| |||||||||||||||| | ||| || |||||||||| Sbjct: 700 gtggattgtctcaaagcttcccttatgcttctcacggtttttaatcacaccaa 648
>gb|AF428285.1|AF428285 Arabidopsis thaliana AT5g58420/mqj2_10 mRNA, complete cds Length = 1005 Score = 58.0 bits (29), Expect = 2e-05 Identities = 68/81 (83%) Strand = Plus / Minus Query: 217 ctcctcaatgatggtgagcttgatacccttgcccttggggaggctcacccaaggcttggt 276 |||||| ||||| || ||||||||||| ||||||||||| || |||||| ||||| || Sbjct: 837 ctcctcgatgatagtcagcttgatacctttgcccttgggaagagacacccatggctttgt 778 Query: 277 gcccttgccaatggtgaacac 297 || |||||||||||| |||| Sbjct: 777 tcctttgccaatggtgtacac 757 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacaccaa 395 |||||| ||||||||| |||||||||||||||| | ||| || |||||||||| Sbjct: 711 gtggattgtctcaaagcttcccttatgcttctcacggtttttaatcacaccaa 659
>emb|BX832274.1|CNS09ZPH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH62ZE09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 978 Score = 58.0 bits (29), Expect = 2e-05 Identities = 68/81 (83%) Strand = Plus / Minus Query: 217 ctcctcaatgatggtgagcttgatacccttgcccttggggaggctcacccaaggcttggt 276 |||||| ||||| || ||||||||||| ||||||||||| || |||||| ||||| || Sbjct: 847 ctcctcgatgatagtcagcttgatacctttgcccttgggaagagacacccatggctttgt 788 Query: 277 gcccttgccaatggtgaacac 297 || |||||||||||| |||| Sbjct: 787 tcctttgccaatggtgtacac 767 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacaccaa 395 |||||| ||||||||| |||||||||||||||| | ||| || |||||||||| Sbjct: 721 gtggattgtctcaaagcttcccttatgcttctcacggtttttaatcacaccaa 669
>emb|BX832133.1|CNS09ZP1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH53ZH10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 537 Score = 58.0 bits (29), Expect = 2e-05 Identities = 68/81 (83%) Strand = Plus / Minus Query: 217 ctcctcaatgatggtgagcttgatacccttgcccttggggaggctcacccaaggcttggt 276 |||||| ||||| || ||||||||||| ||||||||||| || |||||| ||||| || Sbjct: 366 ctcctcgatgatagtcagcttgatacctttgcccttgggaagagacacccatggctttgt 307 Query: 277 gcccttgccaatggtgaacac 297 || |||||||||||| |||| Sbjct: 306 tcctttgccaatggtgtacac 286 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacaccaa 395 |||||| ||||||||| |||||||||||||||| | ||| || |||||||||| Sbjct: 240 gtggattgtctcaaagcttcccttatgcttctcacggtttttaatcacaccaa 188
>emb|BX830283.1|CNS09ZZO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB70ZD03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 988 Score = 58.0 bits (29), Expect = 2e-05 Identities = 68/81 (83%) Strand = Plus / Minus Query: 217 ctcctcaatgatggtgagcttgatacccttgcccttggggaggctcacccaaggcttggt 276 |||||| ||||| || ||||||||||| ||||||||||| || |||||| ||||| || Sbjct: 817 ctcctcgatgatagtcagcttgatacctttgcccttgggaagagacacccatggctttgt 758 Query: 277 gcccttgccaatggtgaacac 297 || |||||||||||| |||| Sbjct: 757 tcctttgccaatggtgtacac 737 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacaccaa 395 |||||| ||||||||| |||||||||||||||| | ||| || |||||||||| Sbjct: 691 gtggattgtctcaaagcttcccttatgcttctcacggtttttaatcacaccaa 639
>emb|BX830139.1|CNS09ZZ0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB61ZG04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 737 Score = 58.0 bits (29), Expect = 2e-05 Identities = 68/81 (83%) Strand = Plus / Minus Query: 217 ctcctcaatgatggtgagcttgatacccttgcccttggggaggctcacccaaggcttggt 276 |||||| ||||| || ||||||||||| ||||||||||| || |||||| ||||| || Sbjct: 566 ctcctcgatgatagtcagcttgatacctttgcccttgggaagagacacccatggctttgt 507 Query: 277 gcccttgccaatggtgaacac 297 || |||||||||||| |||| Sbjct: 506 tcctttgccaatggtgtacac 486 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacaccaa 395 |||||| ||||||||| |||||||||||||||| | ||| || |||||||||| Sbjct: 440 gtggattgtctcaaagcttcccttatgcttctcacggtttttaatcacaccaa 388
>emb|BX829418.1|CNS09ZZ4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB12ZD07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 566 Score = 58.0 bits (29), Expect = 2e-05 Identities = 68/81 (83%) Strand = Plus / Minus Query: 217 ctcctcaatgatggtgagcttgatacccttgcccttggggaggctcacccaaggcttggt 276 |||||| ||||| || ||||||||||| ||||||||||| || |||||| ||||| || Sbjct: 395 ctcctcgatgatagtcagcttgatacctttgcccttgggaagagacacccatggctttgt 336 Query: 277 gcccttgccaatggtgaacac 297 || |||||||||||| |||| Sbjct: 335 tcctttgccaatggtgtacac 315 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacaccaa 395 |||||| ||||||||| |||||||||||||||| | ||| || |||||||||| Sbjct: 269 gtggattgtctcaaagcttcccttatgcttctcacggtttttaatcacaccaa 217
>emb|BX832264.1|CNS09ZM6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH61ZG11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 997 Score = 58.0 bits (29), Expect = 2e-05 Identities = 68/81 (83%) Strand = Plus / Minus Query: 217 ctcctcaatgatggtgagcttgatacccttgcccttggggaggctcacccaaggcttggt 276 |||||| ||||| || ||||||||||| ||||||||||| || |||||| ||||| || Sbjct: 826 ctcctcgatgatagtcagcttgatacctttgcccttgggaagagacacccatggctttgt 767 Query: 277 gcccttgccaatggtgaacac 297 || |||||||||||| |||| Sbjct: 766 tcctttgccaatggtgtacac 746 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacaccaa 395 |||||| ||||||||| |||||||||||||||| | ||| || |||||||||| Sbjct: 700 gtggattgtctcaaagcttcccttatgcttctcacggtttttaatcacaccaa 648
>gb|AY086206.1| Arabidopsis thaliana clone 22434 mRNA, complete sequence Length = 1010 Score = 58.0 bits (29), Expect = 2e-05 Identities = 68/81 (83%) Strand = Plus / Minus Query: 217 ctcctcaatgatggtgagcttgatacccttgcccttggggaggctcacccaaggcttggt 276 |||||| ||||| || ||||||||||| ||||||||||| || |||||| ||||| || Sbjct: 841 ctcctcgatgatagtcagcttgatacctttgcccttgggaagagacacccatggctttgt 782 Query: 277 gcccttgccaatggtgaacac 297 || |||||||||||| |||| Sbjct: 781 tcctttgccaatggtgtacac 761 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacaccaa 395 |||||| ||||||||| |||||||||||||||| | ||| || |||||||||| Sbjct: 715 gtggattgtctcaaagcttcccttatgcttctcacggtttttaatcacaccaa 663
>dbj|AB025632.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQJ2 Length = 51440 Score = 58.0 bits (29), Expect = 2e-05 Identities = 68/81 (83%) Strand = Plus / Minus Query: 217 ctcctcaatgatggtgagcttgatacccttgcccttggggaggctcacccaaggcttggt 276 |||||| ||||| || ||||||||||| ||||||||||| || |||||| ||||| || Sbjct: 6898 ctcctcgatgatagtcagcttgatacctttgcccttgggaagagacacccatggctttgt 6839 Query: 277 gcccttgccaatggtgaacac 297 || |||||||||||| |||| Sbjct: 6838 tcctttgccaatggtgtacac 6818 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacaccaa 395 |||||| ||||||||| |||||||||||||||| | ||| || |||||||||| Sbjct: 6772 gtggattgtctcaaagcttcccttatgcttctcacggtttttaatcacaccaa 6720
>ref|XM_366671.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG02747.4) partial mRNA Length = 735 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 216 gctcctcaatgatggtgagcttgatacccttgcccttggg 255 |||||||| |||||||||||||| ||||||||||||||| Sbjct: 697 gctcctcagcgatggtgagcttgacacccttgcccttggg 658
>ref|XM_388890.1| Gibberella zeae PH-1 chromosome 2 conserved hypothetical protein (FG08714.1) partial mRNA Length = 732 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 216 gctcctcaatgatggtgagcttgatacccttgcccttggg 255 |||||||| |||||||||||||| ||||||||||||||| Sbjct: 697 gctcctcagcgatggtgagcttgacacccttgcccttggg 658
>gb|AY850339.1| Magnaporthe grisea 40S ribosomal protein S4-A-like protein mRNA, complete cds Length = 1024 Score = 56.0 bits (28), Expect = 9e-05 Identities = 37/40 (92%) Strand = Plus / Minus Query: 216 gctcctcaatgatggtgagcttgatacccttgcccttggg 255 |||||||| |||||||||||||| ||||||||||||||| Sbjct: 766 gctcctcagcgatggtgagcttgacacccttgcccttggg 727
>ref|NM_001036769.1| Arabidopsis thaliana structural constituent of ribosome AT5G07090 transcript variant AT5G07090.2 mRNA, complete cds Length = 1174 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacacc 393 |||||| ||||||||| ||||||||||||| || | |||||| |||||||| Sbjct: 739 gtggattgtctcaaagcttcccttatgcttttcacggttcttaatcacacc 689 Score = 46.1 bits (23), Expect = 0.086 Identities = 32/35 (91%) Strand = Plus / Minus Query: 218 tcctcaatgatggtgagcttgatacccttgccctt 252 |||||||||||||| ||||| ||||| |||||||| Sbjct: 864 tcctcaatgatggtcagcttaatacctttgccctt 830
>ref|NM_120791.2| Arabidopsis thaliana structural constituent of ribosome AT5G07090 transcript variant AT5G07090.1 mRNA, complete cds Length = 1088 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacacc 393 |||||| ||||||||| ||||||||||||| || | |||||| |||||||| Sbjct: 654 gtggattgtctcaaagcttcccttatgcttttcacggttcttaatcacacc 604 Score = 46.1 bits (23), Expect = 0.086 Identities = 32/35 (91%) Strand = Plus / Minus Query: 218 tcctcaatgatggtgagcttgatacccttgccctt 252 |||||||||||||| ||||| ||||| |||||||| Sbjct: 779 tcctcaatgatggtcagcttaatacctttgccctt 745
>gb|BT014201.1| Lycopersicon esculentum clone 133378R, mRNA sequence Length = 1292 Score = 54.0 bits (27), Expect = 4e-04 Identities = 78/95 (82%) Strand = Plus / Minus Query: 290 gtgaacacgttgcccagacgggtggcaaactggtgaccctgggcatcctcaacgtggatg 349 |||||||| || |||| |||||| ||||||| || ||| ||| ||||| || ||| | Sbjct: 760 gtgaacacatttcccaaacgggtagcaaactcatgccccagggaatcctgaatgtgaact 701 Query: 350 gtctcaaaggttcccttatgcttctccctgttctt 384 ||||||||| | ||||| ||||||||||||||||| Sbjct: 700 gtctcaaagctacccttgtgcttctccctgttctt 666
>gb|BT011369.1| Drosophila melanogaster RE57333 full insert cDNA Length = 992 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 269 ggcttggtgcccttgccaatggtgaacacgttgcccagacgggtggc 315 |||||| |||||||||||||| ||||||||||| || ||||||||| Sbjct: 813 ggcttgttgcccttgccaatgatgaacacgttggtcaaacgggtggc 767
>gb|AY079417.1| Arabidopsis thaliana putative 40S ribosomal protein S4 (At5g07090) mRNA, complete cds Length = 820 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacacc 393 |||||| ||||||||| ||||||||||||| || | |||||| |||||||| Sbjct: 627 gtggattgtctcaaagcttcccttatgcttttcacggttcttaatcacacc 577 Score = 46.1 bits (23), Expect = 0.086 Identities = 32/35 (91%) Strand = Plus / Minus Query: 218 tcctcaatgatggtgagcttgatacccttgccctt 252 |||||||||||||| ||||| ||||| |||||||| Sbjct: 752 tcctcaatgatggtcagcttaatacctttgccctt 718
>gb|AY050933.1| Arabidopsis thaliana putative 40S ribosomal protein S4 (At5g07090) mRNA, complete cds Length = 1059 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacacc 393 |||||| ||||||||| ||||||||||||| || | |||||| |||||||| Sbjct: 651 gtggattgtctcaaagcttcccttatgcttttcacggttcttaatcacacc 601 Score = 46.1 bits (23), Expect = 0.086 Identities = 32/35 (91%) Strand = Plus / Minus Query: 218 tcctcaatgatggtgagcttgatacccttgccctt 252 |||||||||||||| ||||| ||||| |||||||| Sbjct: 776 tcctcaatgatggtcagcttaatacctttgccctt 742
>emb|AL163652.1|ATT28J14 Arabidopsis thaliana DNA chromosome 5, BAC clone T28J14 (ESSA project) Length = 104607 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacacc 393 |||||| ||||||||| ||||||||||||| || | |||||| |||||||| Sbjct: 7896 gtggattgtctcaaagcttcccttatgcttttcacggttcttaatcacacc 7846 Score = 46.1 bits (23), Expect = 0.086 Identities = 32/35 (91%) Strand = Plus / Minus Query: 218 tcctcaatgatggtgagcttgatacccttgccctt 252 |||||||||||||| ||||| ||||| |||||||| Sbjct: 8021 tcctcaatgatggtcagcttaatacctttgccctt 7987
>ref|NM_168537.1| Drosophila melanogaster Ribosomal protein S4 CG11276-RA, transcript variant A (RpS4), mRNA Length = 983 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 269 ggcttggtgcccttgccaatggtgaacacgttgcccagacgggtggc 315 |||||| |||||||||||||| ||||||||||| || ||||||||| Sbjct: 813 ggcttgttgcccttgccaatgatgaacacgttggtcaaacgggtggc 767
>gb|AY093715.1| Arabidopsis thaliana AT5g07090/T28J14_30 mRNA, complete cds Length = 789 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacacc 393 |||||| ||||||||| ||||||||||||| || | |||||| |||||||| Sbjct: 627 gtggattgtctcaaagcttcccttatgcttttcacggttcttaatcacacc 577 Score = 46.1 bits (23), Expect = 0.086 Identities = 32/35 (91%) Strand = Plus / Minus Query: 218 tcctcaatgatggtgagcttgatacccttgccctt 252 |||||||||||||| ||||| ||||| |||||||| Sbjct: 752 tcctcaatgatggtcagcttaatacctttgccctt 718
>ref|NM_079329.2| Drosophila melanogaster Ribosomal protein S4 CG11276-RB, transcript variant B (RpS4), mRNA Length = 969 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 269 ggcttggtgcccttgccaatggtgaacacgttgcccagacgggtggc 315 |||||| |||||||||||||| ||||||||||| || ||||||||| Sbjct: 799 ggcttgttgcccttgccaatgatgaacacgttggtcaaacgggtggc 753
>gb|AC093546.2| Drosophila melanogaster 3L BAC RP98-8G7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 207761 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 269 ggcttggtgcccttgccaatggtgaacacgttgcccagacgggtggc 315 |||||| |||||||||||||| ||||||||||| || ||||||||| Sbjct: 141932 ggcttgttgcccttgccaatgatgaacacgttggtcaaacgggtggc 141886
>gb|AY070769.1| Arabidopsis thaliana AT5g07090/T28J14_30 mRNA, complete cds Length = 1008 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacacc 393 |||||| ||||||||| ||||||||||||| || | |||||| |||||||| Sbjct: 651 gtggattgtctcaaagcttcccttatgcttttcacggttcttaatcacacc 601 Score = 46.1 bits (23), Expect = 0.086 Identities = 32/35 (91%) Strand = Plus / Minus Query: 218 tcctcaatgatggtgagcttgatacccttgccctt 252 |||||||||||||| ||||| ||||| |||||||| Sbjct: 776 tcctcaatgatggtcagcttaatacctttgccctt 742
>emb|BX824247.1|CNS0A6X1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH32ZH05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1168 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacacc 393 |||||| ||||||||| ||||||||||||| || | |||||| |||||||| Sbjct: 354 gtggattgtctcaaagcttcccttatgcttttcacggttcttaatcacacc 404 Score = 46.1 bits (23), Expect = 0.086 Identities = 32/35 (91%) Strand = Plus / Plus Query: 218 tcctcaatgatggtgagcttgatacccttgccctt 252 |||||||||||||| ||||| ||||| |||||||| Sbjct: 229 tcctcaatgatggtcagcttaatacctttgccctt 263
>emb|BX832664.1|CNS09ZT5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH87ZG07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 976 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacacc 393 |||||| ||||||||| ||||||||||||| || | |||||| |||||||| Sbjct: 621 gtggattgtctcaaagcttcccttatgcttttcacggttcttaatcacacc 571 Score = 46.1 bits (23), Expect = 0.086 Identities = 32/35 (91%) Strand = Plus / Minus Query: 218 tcctcaatgatggtgagcttgatacccttgccctt 252 |||||||||||||| ||||| ||||| |||||||| Sbjct: 746 tcctcaatgatggtcagcttaatacctttgccctt 712
>emb|BX832452.1|CNS09ZTE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH74ZD04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 942 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacacc 393 |||||| ||||||||| ||||||||||||| || | |||||| |||||||| Sbjct: 625 gtggattgtctcaaagcttcccttatgcttttcacggttcttaatcacacc 575 Score = 46.1 bits (23), Expect = 0.086 Identities = 32/35 (91%) Strand = Plus / Minus Query: 218 tcctcaatgatggtgagcttgatacccttgccctt 252 |||||||||||||| ||||| ||||| |||||||| Sbjct: 750 tcctcaatgatggtcagcttaatacctttgccctt 716
>emb|BX832256.1|CNS09ZVR Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH61ZC05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 952 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacacc 393 |||||| ||||||||| ||||||||||||| || | |||||| |||||||| Sbjct: 614 gtggattgtctcaaagcttcccttatgcttttcacggttcttaatcacacc 564 Score = 46.1 bits (23), Expect = 0.086 Identities = 32/35 (91%) Strand = Plus / Minus Query: 218 tcctcaatgatggtgagcttgatacccttgccctt 252 |||||||||||||| ||||| ||||| |||||||| Sbjct: 739 tcctcaatgatggtcagcttaatacctttgccctt 705
>gb|AY085205.1| Arabidopsis thaliana clone 13813 mRNA, complete sequence Length = 1011 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacacc 393 |||||| ||||||||| ||||||||||||| || | |||||| |||||||| Sbjct: 654 gtggattgtctcaaagcttcccttatgcttttcacggttcttaatcacacc 604 Score = 46.1 bits (23), Expect = 0.086 Identities = 32/35 (91%) Strand = Plus / Minus Query: 218 tcctcaatgatggtgagcttgatacccttgccctt 252 |||||||||||||| ||||| ||||| |||||||| Sbjct: 779 tcctcaatgatggtcagcttaatacctttgccctt 745
>dbj|AB010697.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOJ9 Length = 86380 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacacc 393 |||||| ||||||||| ||||||||||||| || | |||||| |||||||| Sbjct: 82619 gtggattgtctcaaagcttcccttatgcttttcacggttcttaatcacacc 82569 Score = 46.1 bits (23), Expect = 0.086 Identities = 32/35 (91%) Strand = Plus / Minus Query: 218 tcctcaatgatggtgagcttgatacccttgccctt 252 |||||||||||||| ||||| ||||| |||||||| Sbjct: 82744 tcctcaatgatggtcagcttaatacctttgccctt 82710
>emb|X79300.1|GHRS4E G.hirsutum (DPL 62) mRNA for ribosomal protein small subunit 4e Length = 1090 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 347 atggtctcaaaggttcccttatgcttctccctgtt 381 |||||||||||| | |||||||||||||||||||| Sbjct: 678 atggtctcaaagctacccttatgcttctccctgtt 644
>gb|AE003539.3| Drosophila melanogaster chromosome 3L, section 46 of 83 of the complete sequence Length = 272016 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 269 ggcttggtgcccttgccaatggtgaacacgttgcccagacgggtggc 315 |||||| |||||||||||||| ||||||||||| || ||||||||| Sbjct: 169866 ggcttgttgcccttgccaatgatgaacacgttggtcaaacgggtggc 169820
>dbj|D16257.1|DRORPS4 Drosophila melanogaster rpS4 mRNA for ribosomal protein S4, complete cds Length = 870 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 269 ggcttggtgcccttgccaatggtgaacacgttgcccagacgggtggc 315 |||||| |||||||||||||| ||||||||||| || ||||||||| Sbjct: 713 ggcttgttgcccttgccaatgatgaacacgttggtcaaacgggtggc 667
>ref|XM_502766.1| Yarrowia lipolytica CLIB122, YALI0D12903g predicted mRNA Length = 783 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Minus Query: 227 atggtgagcttgatacccttgcccttggg 255 |||| |||||||||||||||||||||||| Sbjct: 743 atggagagcttgatacccttgcccttggg 715
>gb|AF054511.1|AF054511 Yarrowia lipolytica ribosomal protein S7 (RPS7) mRNA, complete cds Length = 852 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Minus Query: 227 atggtgagcttgatacccttgcccttggg 255 |||| |||||||||||||||||||||||| Sbjct: 745 atggagagcttgatacccttgcccttggg 717
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Plus Query: 227 atggtgagcttgatacccttgcccttggg 255 |||| |||||||||||||||||||||||| Sbjct: 1601891 atggagagcttgatacccttgcccttggg 1601919
>ref|XM_783401.1| PREDICTED: Strongylocentrotus purpuratus similar to CG11276-PA, isoform A (LOC583495), partial mRNA Length = 285 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Minus Query: 293 aacacgttgcccagacgggtggca 316 |||||||||||||||||||||||| Sbjct: 179 aacacgttgcccagacgggtggca 156
>gb|DQ445520.1| Graphocephala atropunctata isolate WHGA0585 putative ribosomal protein S4e mRNA, complete cds Length = 792 Score = 48.1 bits (24), Expect = 0.022 Identities = 30/32 (93%) Strand = Plus / Minus Query: 269 ggcttggtgcccttgccaatggtgaacacgtt 300 ||||||||||||||||||||| |||| ||||| Sbjct: 701 ggcttggtgcccttgccaatgatgaagacgtt 670
>ref|XM_775416.1| PREDICTED: Strongylocentrotus purpuratus similar to 40S ribosomal protein S4, X isoform (LOC574997), mRNA Length = 825 Score = 46.1 bits (23), Expect = 0.086 Identities = 62/75 (82%) Strand = Plus / Minus Query: 242 cccttgcccttggggaggctcacccaaggcttggtgcccttgccaatggtgaacacgttg 301 |||||||||||||||||| || | | |||| || ||||||| ||| |||||||||| Sbjct: 770 cccttgcccttggggagggagacgtaggccttgttggccttgccgatgacgaacacgttg 711 Query: 302 cccagacgggtggca 316 || |||||||||||| Sbjct: 710 ccaagacgggtggca 696
>emb|BX833645.1|CNS0A1VP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL68ZB07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 984 Score = 46.1 bits (23), Expect = 0.086 Identities = 44/51 (86%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacacc 393 |||||| ||||||| | ||||||||||||| || | |||||| |||||||| Sbjct: 625 gtggattgtctcaaggcttcccttatgcttttcacggttcttaatcacacc 575
>emb|BX831856.1|CNS09ZNQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH34ZE09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 934 Score = 46.1 bits (23), Expect = 0.086 Identities = 44/51 (86%) Strand = Plus / Minus Query: 343 gtggatggtctcaaaggttcccttatgcttctccctgttcttgatcacacc 393 |||||| ||||||| | |||||||||||||||| | ||||| |||||||| Sbjct: 625 gtggattgtctcaacgcttcccttatgcttctcacggttctgaatcacacc 575
>emb|BX067601.1|CNS09OBP Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC51BD11 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 862 Score = 44.1 bits (22), Expect = 0.34 Identities = 28/30 (93%) Strand = Plus / Plus Query: 271 cttggtgcccttgccaatggtgaacacgtt 300 |||||||| |||||| |||||||||||||| Sbjct: 282 cttggtgctcttgccgatggtgaacacgtt 311
>emb|BX067600.1|CNS09OBO Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC51BD11 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1037 Score = 44.1 bits (22), Expect = 0.34 Identities = 28/30 (93%) Strand = Plus / Minus Query: 271 cttggtgcccttgccaatggtgaacacgtt 300 |||||||| |||||| |||||||||||||| Sbjct: 712 cttggtgctcttgccgatggtgaacacgtt 683
>gb|DQ362415.1| Shigella dysenteriae strain G1274 GcvT (gcvT) gene, partial cds Length = 416 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Plus Query: 61 ggttcgcaaatcaacaaacatcaggc 86 |||||||||||| ||||||||||||| Sbjct: 88 ggttcgcaaatcgacaaacatcaggc 113
>dbj|AB017068.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJG14 Length = 86121 Score = 44.1 bits (22), Expect = 0.34 Identities = 47/54 (87%), Gaps = 1/54 (1%) Strand = Plus / Plus Query: 343 gtggatggtctcaaaggttcccttatg-cttctccctgttcttgatcacaccaa 395 |||||||||||||||| ||||||| || || || | ||||||||||||||||| Sbjct: 15623 gtggatggtctcaaagcttcccttttgttttttcacggttcttgatcacaccaa 15676
>gb|AY439895.1| Armigeres subalbatus ASAP ID: 38941 cytosolic small ribosomal subunit S4 mRNA sequence Length = 960 Score = 42.1 bits (21), Expect = 1.3 Identities = 39/45 (86%) Strand = Plus / Minus Query: 271 cttggtgcccttgccaatggtgaacacgttgcccagacgggtggc 315 ||||||| ||||||| ||| |||||||||| |||||||||||| Sbjct: 729 cttggtggccttgccgatgatgaacacgttagtcagacgggtggc 685
>gb|AY433736.1| Aedes aegypti ASAP ID: 34407 cytosolic small ribosomal subunit S4 mRNA sequence Length = 755 Score = 42.1 bits (21), Expect = 1.3 Identities = 39/45 (86%) Strand = Plus / Minus Query: 271 cttggtgcccttgccaatggtgaacacgttgcccagacgggtggc 315 ||||||| |||| |||||| |||| |||||| |||||||||||| Sbjct: 444 cttggtggccttaccaatgatgaaaacgttggtcagacgggtggc 400
>gb|DQ440018.1| Aedes aegypti clone AE-221 40S ribosomal protein S4 mRNA, complete cds Length = 789 Score = 42.1 bits (21), Expect = 1.3 Identities = 39/45 (86%) Strand = Plus / Minus Query: 271 cttggtgcccttgccaatggtgaacacgttgcccagacgggtggc 315 ||||||| |||| |||||| |||| |||||| |||||||||||| Sbjct: 699 cttggtggccttaccaatgatgaaaacgttggtcagacgggtggc 655
>gb|AC148078.2| Mus musculus BAC clone RP24-186K12 from chromosome 13, complete sequence Length = 149455 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 ccttggggaggctcacccaag 269 ||||||||||||||||||||| Sbjct: 134897 ccttggggaggctcacccaag 134877
>ref|XM_657306.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4794.2), mRNA Length = 720 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 227 atggtgagcttgatacccttgcccttggg 255 |||| |||||||| ||||||||||||||| Sbjct: 674 atggagagcttgacacccttgcccttggg 646
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 321 ggtgaccctgggcatcctcaacgtg 345 ||||||||||||||| ||||||||| Sbjct: 4589196 ggtgaccctgggcatgctcaacgtg 4589172
>ref|XM_749829.1| Aspergillus fumigatus Af293 cytosolic small ribosomal subunit S4 (Afu3g06840) partial mRNA Length = 786 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 227 atggtgagcttgatacccttgcccttggg 255 ||||||||||| | ||||||||||||||| Sbjct: 740 atggtgagcttaacacccttgcccttggg 712
>emb|CR938551.1| Single read from an extremity of a full-length cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAA1YI07AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 747 Score = 42.1 bits (21), Expect = 1.3 Identities = 39/45 (86%) Strand = Plus / Minus Query: 271 cttggtgcccttgccaatggtgaacacgttgcccagacgggtggc 315 ||||||| |||| |||||| |||| |||||| |||||||||||| Sbjct: 721 cttggtggccttaccaatgatgaaaacgttggtcagacgggtggc 677
>emb|CR938407.1| Single read from an extremity of a full-length cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAA2YA05AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 806 Score = 42.1 bits (21), Expect = 1.3 Identities = 39/45 (86%) Strand = Plus / Minus Query: 271 cttggtgcccttgccaatggtgaacacgttgcccagacgggtggc 315 ||||||| |||| |||||| |||| |||||| |||||||||||| Sbjct: 720 cttggtggccttaccaatgatgaaaacgttggtcagacgggtggc 676
>emb|CR938406.1| Single read from an extremity of a full-length cDNA clone made from Aedes aegypti total adult females. 3-prime end of clone KW0AAA2YA05BBM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 605 Score = 42.1 bits (21), Expect = 1.3 Identities = 39/45 (86%) Strand = Plus / Plus Query: 271 cttggtgcccttgccaatggtgaacacgttgcccagacgggtggc 315 ||||||| |||| |||||| |||| |||||| |||||||||||| Sbjct: 296 cttggtggccttaccaatgatgaaaacgttggtcagacgggtggc 340
>emb|CR938380.1| Single read from an extremity of a full-length cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAA2YB03AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 808 Score = 42.1 bits (21), Expect = 1.3 Identities = 39/45 (86%) Strand = Plus / Minus Query: 271 cttggtgcccttgccaatggtgaacacgttgcccagacgggtggc 315 ||||||| |||| |||||| |||| |||||| |||||||||||| Sbjct: 722 cttggtggccttaccaatgatgaaaacgttggtcagacgggtggc 678
>emb|CR938366.1| Single read from an extremity of a full-length cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAA2YB15AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 810 Score = 42.1 bits (21), Expect = 1.3 Identities = 39/45 (86%) Strand = Plus / Minus Query: 271 cttggtgcccttgccaatggtgaacacgttgcccagacgggtggc 315 ||||||| |||| |||||| |||| |||||| |||||||||||| Sbjct: 723 cttggtggccttaccaatgatgaaaacgttggtcagacgggtggc 679
>gb|AC149492.14| Medicago truncatula clone mth2-99d10, complete sequence Length = 124792 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 371 ttctccctgttcttgatcaca 391 ||||||||||||||||||||| Sbjct: 120862 ttctccctgttcttgatcaca 120842
>gb|AE012037.1| Xanthomonas axonopodis pv. citri str. 306, section 415 of 469 of the complete genome Length = 10848 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 321 ggtgaccctgggcatcctcaacgtg 345 ||||||||||||||| ||||||||| Sbjct: 8128 ggtgaccctgggcatgctcaacgtg 8104
>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 Length = 1824958 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 235 cttgatacccttgcccttggggagg 259 ||||| ||||||||||||||||||| Sbjct: 775952 cttgacacccttgcccttggggagg 775976
>gb|BC081584.1| Danio rerio ribosomal protein S4, X-linked, mRNA (cDNA clone MGC:92076 IMAGE:7046733), complete cds Length = 888 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 262 cacccaaggcttggtgcccttgccaatg 289 |||||| |||||| |||||||||||||| Sbjct: 715 cacccatggcttgttgcccttgccaatg 688
>ref|NM_001030954.1| Gallus gallus metastasis suppressor 1 (MTSS1), mRNA Length = 2945 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 gccaatggtgaacacgttgc 302 |||||||||||||||||||| Sbjct: 1770 gccaatggtgaacacgttgc 1789
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 232 gagcttgatacccttgcccttggg 255 |||||||| ||||||||||||||| Sbjct: 1677741 gagcttgacacccttgcccttggg 1677718
>gb|AC101844.7| Mus musculus chromosome 7, clone RP23-257M22, complete sequence Length = 197827 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 cttcctctgctcctcaatga 227 |||||||||||||||||||| Sbjct: 23788 cttcctctgctcctcaatga 23769
>gb|AC147681.8| Canis Familiaris, clone XX-10A1, complete sequence Length = 160031 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 203 tccctcttcctctgctcctc 222 |||||||||||||||||||| Sbjct: 75373 tccctcttcctctgctcctc 75392
>gb|AC115064.9| Mus musculus chromosome 1, clone RP24-401B18, complete sequence Length = 184893 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 aaacatccacattacatcta 48 |||||||||||||||||||| Sbjct: 87241 aaacatccacattacatcta 87260
>gb|AC154910.3| Mus musculus BAC clone RP23-70L9 from chromosome 12, complete sequence Length = 243671 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 ggttccaggaacatagttct 122 |||||||||||||||||||| Sbjct: 192051 ggttccaggaacatagttct 192032
>ref|XM_567206.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNA06200) partial mRNA Length = 840 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 232 gagcttgatacccttgcccttggg 255 |||||||| ||||||||||||||| Sbjct: 738 gagcttgacacccttgcccttggg 715
>gb|AC132320.4| Mus musculus BAC clone RP24-259L9 from chromosome 18, complete sequence Length = 156239 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 ctcttcctctgctcctcaat 225 |||||||||||||||||||| Sbjct: 47354 ctcttcctctgctcctcaat 47335
>ref|NM_001005589.1| Danio rerio ribosomal protein S4, X-linked (rps4x), mRNA Length = 888 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 262 cacccaaggcttggtgcccttgccaatg 289 |||||| |||||| |||||||||||||| Sbjct: 715 cacccatggcttgttgcccttgccaatg 688
>gb|BC025658.1| Homo sapiens glycine/arginine rich protein 1, mRNA (cDNA clone MGC:34152 IMAGE:5198480), complete cds Length = 1554 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 gaatcaggccttggcagcagcctg 192 |||||||||||||||||| ||||| Sbjct: 421 gaatcaggccttggcagccgcctg 398
>emb|Z68908.1|HSU227D1 Human DNA sequence from clone LL0XNC01-227D1 on chromosome X Contains part of the IL1RAPL2 gene for interleukin 1 receptor accessory protein-like 2, complete sequence Length = 33667 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 aaaggttcccttatgcttct 374 |||||||||||||||||||| Sbjct: 13597 aaaggttcccttatgcttct 13578
>emb|AL731567.6| Human DNA sequence from clone RP11-67C2 on chromosome 10 Contains the ALOX5 gene for arachidonate 5-lipoxygenase, a novel gene, the 3' end of a gene for cellular modulator of immune recognition (c-MIR) and five CpG islands, complete sequence Length = 129266 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 119 ttctatatccttgcagataactgg 142 |||||||||||| ||||||||||| Sbjct: 81474 ttctatatccttacagataactgg 81451
>ref|XM_505600.1| Yarrowia lipolytica CLIB122, YALI0F18920g predicted mRNA Length = 1485 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 cttcctctgctcctcaatga 227 |||||||||||||||||||| Sbjct: 1026 cttcctctgctcctcaatga 1007
>ref|XM_795025.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC581083 (LOC581083), mRNA Length = 1197 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 tccctcttcctctgctcctc 222 |||||||||||||||||||| Sbjct: 764 tccctcttcctctgctcctc 745
>emb|AJ719272.1| Gallus gallus mRNA for hypothetical protein, clone 1a13 Length = 2945 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 gccaatggtgaacacgttgc 302 |||||||||||||||||||| Sbjct: 1770 gccaatggtgaacacgttgc 1789
>emb|BX293994.28| Zebrafish DNA sequence from clone DKEY-256K14 in linkage group 10, complete sequence Length = 210640 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 tcttcctctgctcctcaatg 226 |||||||||||||||||||| Sbjct: 25208 tcttcctctgctcctcaatg 25189
>gb|AC009806.9| Homo sapiens chromosome 11, clone RP11-51B23, complete sequence Length = 175223 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 cttaaaaaagatggttccag 110 |||||||||||||||||||| Sbjct: 158366 cttaaaaaagatggttccag 158385
>gb|AC007437.16| Homo sapiens 12q22 BAC RPCI11-541G9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 179854 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 254 gggaggctcacccaaggcttggtg 277 |||||||||||||||| ||||||| Sbjct: 12827 gggaggctcacccaagccttggtg 12850
>gb|AC007656.2| Homo sapiens 12q22 BAC RPCI11-534P6 (Rowswell Park Cancer Institute Human BAC Library) complete sequence Length = 171236 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 254 gggaggctcacccaaggcttggtg 277 |||||||||||||||| ||||||| Sbjct: 157441 gggaggctcacccaagccttggtg 157464
>gb|AC150660.4| Mus musculus BAC clone RP23-41F9 from chromosome 15, complete sequence Length = 229655 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 ctggtgaccctgggcatcct 338 |||||||||||||||||||| Sbjct: 49823 ctggtgaccctgggcatcct 49842
>gb|AC133282.7| Mus musculus chromosome 15, clone RP24-408B1, complete sequence Length = 183129 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 ctggtgaccctgggcatcct 338 |||||||||||||||||||| Sbjct: 12843 ctggtgaccctgggcatcct 12824
>dbj|BS000205.2| Pan troglodytes chromosome 22 clone:RP43-093B21, map 22, complete sequences Length = 203521 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 tagttctatatccttgcaga 135 |||||||||||||||||||| Sbjct: 130844 tagttctatatccttgcaga 130825
>gb|AC110033.9| Mus musculus chromosome 1, clone RP23-117O18, complete sequence Length = 260404 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 aaacatccacattacatcta 48 |||||||||||||||||||| Sbjct: 1569 aaacatccacattacatcta 1550
>emb|AL096869.8|CNS00YVH Human chromosome 14 DNA sequence BAC R-1078H9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 228097 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 ctcttcctctgctcctcaat 225 |||||||||||||||||||| Sbjct: 63018 ctcttcctctgctcctcaat 62999
>gb|AY919674.1| Homo sapiens amyloid beta (A4) precursor protein (protease nexin-II, Alzheimer disease) (APP) gene, complete cds Length = 293960 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 tagttctatatccttgcaga 135 |||||||||||||||||||| Sbjct: 254416 tagttctatatccttgcaga 254435
>gb|AC151990.6| Mus musculus BAC clone RP23-299K14 from chromosome 18, complete sequence Length = 205253 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 ctcttcctctgctcctcaat 225 |||||||||||||||||||| Sbjct: 62232 ctcttcctctgctcctcaat 62251
>dbj|AP001694.1| Homo sapiens genomic DNA, chromosome 21q, section 38/105 Length = 340000 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 tagttctatatccttgcaga 135 |||||||||||||||||||| Sbjct: 325187 tagttctatatccttgcaga 325168
>gb|AC108796.10| Mus musculus chromosome 1, clone RP23-349L18, complete sequence Length = 188713 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 aaacatccacattacatcta 48 |||||||||||||||||||| Sbjct: 16088 aaacatccacattacatcta 16069
>gb|AC140464.3| Mus musculus BAC clone RP24-383H6 from 12, complete sequence Length = 113482 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 ggttccaggaacatagttct 122 |||||||||||||||||||| Sbjct: 64196 ggttccaggaacatagttct 64177
>gb|AC102003.5| Mus musculus chromosome 7, clone RP24-488I10, complete sequence Length = 150428 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 cttcctctgctcctcaatga 227 |||||||||||||||||||| Sbjct: 147440 cttcctctgctcctcaatga 147421
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 cttcctctgctcctcaatga 227 |||||||||||||||||||| Sbjct: 2525910 cttcctctgctcctcaatga 2525929
>emb|AL603836.13| Mouse DNA sequence from clone RP23-56A14 on chromosome 7, complete sequence Length = 215366 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 tgcccttggggaggctcacc 265 |||||||||||||||||||| Sbjct: 213316 tgcccttggggaggctcacc 213297
>emb|AL139193.4|CNS01DXA Human chromosome 14 DNA sequence BAC R-661G16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 162691 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 ctcttcctctgctcctcaat 225 |||||||||||||||||||| Sbjct: 27574 ctcttcctctgctcctcaat 27593
>dbj|AP000141.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region, clone B2291C14-R44F3, segment 6/10, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 tagttctatatccttgcaga 135 |||||||||||||||||||| Sbjct: 24483 tagttctatatccttgcaga 24464
>dbj|D87675.1| Homo sapiens DNA for amyloid precursor protein, complete cds Length = 301692 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 tagttctatatccttgcaga 135 |||||||||||||||||||| Sbjct: 258129 tagttctatatccttgcaga 258148
>dbj|AP001442.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:T1715, LL56-APP region, complete sequence Length = 68001 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 tagttctatatccttgcaga 135 |||||||||||||||||||| Sbjct: 7611 tagttctatatccttgcaga 7592
>dbj|AP000088.1| Homo sapiens genomic DNA of 21q22.1, APP related, B2291C14-T1533 region, segment 5/7 Length = 161014 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 tagttctatatccttgcaga 135 |||||||||||||||||||| Sbjct: 124483 tagttctatatccttgcaga 124464 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,685,069 Number of Sequences: 3902068 Number of extensions: 3685069 Number of successful extensions: 78983 Number of sequences better than 10.0: 129 Number of HSP's better than 10.0 without gapping: 129 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78607 Number of HSP's gapped (non-prelim): 371 length of query: 395 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 373 effective length of database: 17,147,199,772 effective search space: 6395905514956 effective search space used: 6395905514956 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)