ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart52b01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_450643.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1731 Score = 262 bits (132), Expect = 8e-67 Identities = 207/232 (89%) Strand = Plus / Minus Query: 168 cgcagcgcgtgatctcctccgggagcttgccgacgcgctcgatgccctcctcgaaggcga 227 |||||| | |||||||| ||| |||| |||||||||||||| ||||||||||||| ||| Sbjct: 1708 cgcagcccatgatctccggcggcagctcgccgacgcgctcgacgccctcctcgaagacga 1649 Query: 228 cgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaaggcccagacgccggggt 287 |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 1648 tgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaacgcccacacgccggggt 1589 Query: 288 tgtcggcccggaaccgcagcgccgtccagccgtaggggtgcaccgccaccgtgttcttca 347 |||| |||| |||||| ||||||||||| ||| | ||||||||||||||||||||||||| Sbjct: 1588 tgtccgccctgaaccggagcgccgtccacccgaacgggtgcaccgccaccgtgttcttca 1529 Query: 348 tcacgggatccctcaggttgaacgccggcgggtgcgccgccgggtcgaaccg 399 | | || ||||| |||||| |||||| ||||||| |||||||||||||||| Sbjct: 1528 tgattgggtccctgaggttgtacgccgccgggtgcaccgccgggtcgaaccg 1477
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 262 bits (132), Expect = 8e-67 Identities = 207/232 (89%) Strand = Plus / Plus Query: 168 cgcagcgcgtgatctcctccgggagcttgccgacgcgctcgatgccctcctcgaaggcga 227 |||||| | |||||||| ||| |||| |||||||||||||| ||||||||||||| ||| Sbjct: 11976552 cgcagcccatgatctccggcggcagctcgccgacgcgctcgacgccctcctcgaagacga 11976611 Query: 228 cgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaaggcccagacgccggggt 287 |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 11976612 tgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaacgcccacacgccggggt 11976671 Query: 288 tgtcggcccggaaccgcagcgccgtccagccgtaggggtgcaccgccaccgtgttcttca 347 |||| |||| |||||| ||||||||||| ||| | ||||||||||||||||||||||||| Sbjct: 11976672 tgtccgccctgaaccggagcgccgtccacccgaacgggtgcaccgccaccgtgttcttca 11976731 Query: 348 tcacgggatccctcaggttgaacgccggcgggtgcgccgccgggtcgaaccg 399 | | || ||||| |||||| |||||| ||||||| |||||||||||||||| Sbjct: 11976732 tgattgggtccctgaggttgtacgccgccgggtgcaccgccgggtcgaaccg 11976783 Score = 79.8 bits (40), Expect = 6e-12 Identities = 121/148 (81%) Strand = Plus / Minus Query: 206 tcgatgccctcctcgaaggcgacgcccatgcccatgaagaagtgcgcctcgatgtggcag 265 |||| |||||||||||| | ||||||||||||||| | | ||| ||||| | ||||||| Sbjct: 19370014 tcgacgccctcctcgaacaccacgcccatgcccatgtacacgtgggcctccaggtggcag 19369955 Query: 266 tggaaggcccagacgccggggttgtcggcccggaaccgcagcgccgtccagccgtagggg 325 ||||| ||| ||||| |||||| |||| ||||| || ||||||||| || ||| Sbjct: 19369954 tggaacagccacacgcccgggttgctcgccctgaacctcaccgccgtccaccccatcggg 19369895 Query: 326 tgcaccgccaccgtgttcttcatcacgg 353 |||| ||||||||||||||||||||||| Sbjct: 19369894 tgcagcgccaccgtgttcttcatcacgg 19369867
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0441A12 Length = 185437 Score = 262 bits (132), Expect = 8e-67 Identities = 207/232 (89%) Strand = Plus / Plus Query: 168 cgcagcgcgtgatctcctccgggagcttgccgacgcgctcgatgccctcctcgaaggcga 227 |||||| | |||||||| ||| |||| |||||||||||||| ||||||||||||| ||| Sbjct: 81032 cgcagcccatgatctccggcggcagctcgccgacgcgctcgacgccctcctcgaagacga 81091 Query: 228 cgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaaggcccagacgccggggt 287 |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 81092 tgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaacgcccacacgccggggt 81151 Query: 288 tgtcggcccggaaccgcagcgccgtccagccgtaggggtgcaccgccaccgtgttcttca 347 |||| |||| |||||| ||||||||||| ||| | ||||||||||||||||||||||||| Sbjct: 81152 tgtccgccctgaaccggagcgccgtccacccgaacgggtgcaccgccaccgtgttcttca 81211 Query: 348 tcacgggatccctcaggttgaacgccggcgggtgcgccgccgggtcgaaccg 399 | | || ||||| |||||| |||||| ||||||| |||||||||||||||| Sbjct: 81212 tgattgggtccctgaggttgtacgccgccgggtgcaccgccgggtcgaaccg 81263
>gb|BT008984.1| Triticum aestivum clone wdk2c.pk007.b15:fis, full insert mRNA sequence Length = 2056 Score = 113 bits (57), Expect = 4e-22 Identities = 111/129 (86%) Strand = Plus / Minus Query: 193 cttgccgacgcgctcgatgccctcctcgaaggcgacgcccatgcccatgaagaagtgcgc 252 |||||||||||| |||||| |||| ||||| ||| |||||||||||| || ||||| Sbjct: 1750 cttgccgacgcggtcgatggcctcggcgaagatgacccccatgcccatgtggaggtgcgg 1691 Query: 253 ctcgatgtggcagtggaaggcccagacgccggggttgtcggcccggaaccgcagcgccgt 312 |||||||||||||||||| ||||| || ||||||||||| ||| ||||||||||||||| Sbjct: 1690 ctcgatgtggcagtggaacgcccacaccccggggttgtccgccacgaaccgcagcgccgt 1631 Query: 313 ccagccgta 321 ||| ||||| Sbjct: 1630 ccacccgta 1622
>gb|BT009516.1| Triticum aestivum clone wr1.pk0100.d9:fis, full insert mRNA sequence Length = 491 Score = 91.7 bits (46), Expect = 2e-15 Identities = 100/118 (84%) Strand = Plus / Minus Query: 197 ccgacgcgctcgatgccctcctcgaaggcgacgcccatgcccatgaagaagtgcgcctcg 256 |||||||| |||||| |||| ||||| ||| ||||| |||||| || ||||| |||| Sbjct: 124 ccgacgcggtcgatggcctcggcgaagatgacccccatccccatgtggaggtgcggctcg 65 Query: 257 atgtggcagtggaaggcccagacgccggggttgtcggcccggaaccgcagcgccgtcc 314 |||||||||||||| ||||| || ||||||||||| ||| ||||||||||||||||| Sbjct: 64 atgtggcagtggaacgcccacaccccggggttgtccgccacgaaccgcagcgccgtcc 7
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 91.7 bits (46), Expect = 2e-15 Identities = 112/134 (83%) Strand = Plus / Minus Query: 188 gggagcttgccgacgcgctcgatgccctcctcgaaggcgacgcccatgcccatgaagaag 247 ||||||| || |||||| |||| | |||| ||||| |||||||||||||||| || | Sbjct: 21550130 gggagctcgctgacgcggtcgacggcctcggcgaagatgacgcccatgcccatgtggagg 21550071 Query: 248 tgcgcctcgatgtggcagtggaaggcccagacgccggggttgtcggcccggaaccgcagc 307 |||| |||||||||||||||||| ||||| || ||||||||||| ||| |||||| | | Sbjct: 21550070 tgcggctcgatgtggcagtggaacgcccacaccccggggttgtccgccacgaaccggatc 21550011 Query: 308 gccgtccagccgta 321 |||||||| ||||| Sbjct: 21550010 gccgtccacccgta 21549997 Score = 83.8 bits (42), Expect = 4e-13 Identities = 87/102 (85%) Strand = Plus / Minus Query: 219 cgaaggcgacgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaaggcccaga 278 ||||| ||||||||||||||||| || ||||| |||||||||||||||||| ||||| Sbjct: 21606980 cgaagacgacgcccatgcccatgtggaggtgcggctcgatgtggcagtggaacgcccacg 21606921 Query: 279 cgccggggttgtcggcccggaaccgcagcgccgtccagccgt 320 |||||| ||||| ||| |||||| ||||||||||| |||| Sbjct: 21606920 cgccggtgttgttggcgacgaaccgaagcgccgtccacccgt 21606879
>dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0567G03 Length = 196834 Score = 91.7 bits (46), Expect = 2e-15 Identities = 112/134 (83%) Strand = Plus / Minus Query: 188 gggagcttgccgacgcgctcgatgccctcctcgaaggcgacgcccatgcccatgaagaag 247 ||||||| || |||||| |||| | |||| ||||| |||||||||||||||| || | Sbjct: 107314 gggagctcgctgacgcggtcgacggcctcggcgaagatgacgcccatgcccatgtggagg 107255 Query: 248 tgcgcctcgatgtggcagtggaaggcccagacgccggggttgtcggcccggaaccgcagc 307 |||| |||||||||||||||||| ||||| || ||||||||||| ||| |||||| | | Sbjct: 107254 tgcggctcgatgtggcagtggaacgcccacaccccggggttgtccgccacgaaccggatc 107195 Query: 308 gccgtccagccgta 321 |||||||| ||||| Sbjct: 107194 gccgtccacccgta 107181 Score = 83.8 bits (42), Expect = 4e-13 Identities = 87/102 (85%) Strand = Plus / Minus Query: 219 cgaaggcgacgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaaggcccaga 278 ||||| ||||||||||||||||| || ||||| |||||||||||||||||| ||||| Sbjct: 164164 cgaagacgacgcccatgcccatgtggaggtgcggctcgatgtggcagtggaacgcccacg 164105 Query: 279 cgccggggttgtcggcccggaaccgcagcgccgtccagccgt 320 |||||| ||||| ||| |||||| ||||||||||| |||| Sbjct: 164104 cgccggtgttgttggcgacgaaccgaagcgccgtccacccgt 164063
>dbj|AP005471.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0062E01 Length = 161804 Score = 83.8 bits (42), Expect = 4e-13 Identities = 87/102 (85%) Strand = Plus / Minus Query: 219 cgaaggcgacgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaaggcccaga 278 ||||| ||||||||||||||||| || ||||| |||||||||||||||||| ||||| Sbjct: 5911 cgaagacgacgcccatgcccatgtggaggtgcggctcgatgtggcagtggaacgcccacg 5852 Query: 279 cgccggggttgtcggcccggaaccgcagcgccgtccagccgt 320 |||||| ||||| ||| |||||| ||||||||||| |||| Sbjct: 5851 cgccggtgttgttggcgacgaaccgaagcgccgtccacccgt 5810
>dbj|AK105605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A11, full insert sequence Length = 2191 Score = 83.8 bits (42), Expect = 4e-13 Identities = 87/102 (85%) Strand = Plus / Minus Query: 219 cgaaggcgacgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaaggcccaga 278 ||||| ||||||||||||||||| || ||||| |||||||||||||||||| ||||| Sbjct: 1859 cgaagacgacgcccatgcccatgtggaggtgcggctcgatgtggcagtggaacgcccacg 1800 Query: 279 cgccggggttgtcggcccggaaccgcagcgccgtccagccgt 320 |||||| ||||| ||| |||||| ||||||||||| |||| Sbjct: 1799 cgccggtgttgttggcgacgaaccgaagcgccgtccacccgt 1758
>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence Length = 157488 Score = 79.8 bits (40), Expect = 6e-12 Identities = 121/148 (81%) Strand = Plus / Minus Query: 206 tcgatgccctcctcgaaggcgacgcccatgcccatgaagaagtgcgcctcgatgtggcag 265 |||| |||||||||||| | ||||||||||||||| | | ||| ||||| | ||||||| Sbjct: 89240 tcgacgccctcctcgaacaccacgcccatgcccatgtacacgtgggcctccaggtggcag 89181 Query: 266 tggaaggcccagacgccggggttgtcggcccggaaccgcagcgccgtccagccgtagggg 325 ||||| ||| ||||| |||||| |||| ||||| || ||||||||| || ||| Sbjct: 89180 tggaacagccacacgcccgggttgctcgccctgaacctcaccgccgtccaccccatcggg 89121 Query: 326 tgcaccgccaccgtgttcttcatcacgg 353 |||| ||||||||||||||||||||||| Sbjct: 89120 tgcagcgccaccgtgttcttcatcacgg 89093
>gb|BT019237.1| Zea mays clone Contig910.F mRNA sequence Length = 1171 Score = 79.8 bits (40), Expect = 6e-12 Identities = 82/96 (85%) Strand = Plus / Plus Query: 226 gacgcccatgcccatgaagaagtgcgcctcgatgtggcagtggaaggcccagacgccggg 285 |||||||||||||||| || ||||| |||||| ||||||||||||||||| ||||| || Sbjct: 241 gacgcccatgcccatgtggaggtgcggctcgatatggcagtggaaggcccacacgcccgg 300 Query: 286 gttgtcggcccggaaccgcagcgccgtccagccgta 321 |||||| ||| |||||| ||| |||||| ||||| Sbjct: 301 gttgtccgccacgaaccggagcatcgtccacccgta 336
>dbj|AK110881.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-G09, full insert sequence Length = 2047 Score = 79.8 bits (40), Expect = 6e-12 Identities = 121/148 (81%) Strand = Plus / Minus Query: 206 tcgatgccctcctcgaaggcgacgcccatgcccatgaagaagtgcgcctcgatgtggcag 265 |||| |||||||||||| | ||||||||||||||| | | ||| ||||| | ||||||| Sbjct: 1788 tcgacgccctcctcgaacaccacgcccatgcccatgtacacgtgggcctccaggtggcag 1729 Query: 266 tggaaggcccagacgccggggttgtcggcccggaaccgcagcgccgtccagccgtagggg 325 ||||| ||| ||||| |||||| |||| ||||| || ||||||||| || ||| Sbjct: 1728 tggaacagccacacgcccgggttgctcgccctgaacctcaccgccgtccaccccatcggg 1669 Query: 326 tgcaccgccaccgtgttcttcatcacgg 353 |||| ||||||||||||||||||||||| Sbjct: 1668 tgcagcgccaccgtgttcttcatcacgg 1641
>ref|XM_322755.1| Neurospora crassa OR74A hypothetical protein (NCU03498.1) partial mRNA Length = 2082 Score = 69.9 bits (35), Expect = 6e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 253 ctcgatgtggcagtggaaggcccagacgccggggttgtcggcccggaaccg 303 ||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct: 1488 ctcgatgtggcagtggaagagccagacgccggggttgtcggcttggaaccg 1438
>ref|XM_950742.1| Neurospora crassa OR74A hypothetical protein (NCU03498.1) partial mRNA Length = 2082 Score = 69.9 bits (35), Expect = 6e-09 Identities = 47/51 (92%) Strand = Plus / Minus Query: 253 ctcgatgtggcagtggaaggcccagacgccggggttgtcggcccggaaccg 303 ||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct: 1488 ctcgatgtggcagtggaagagccagacgccggggttgtcggcttggaaccg 1438
>emb|AL669988.1|NCB23H20 Neurospora crassa DNA linkage group II BAC contig B23H20 Length = 122151 Score = 69.9 bits (35), Expect = 6e-09 Identities = 47/51 (92%) Strand = Plus / Plus Query: 253 ctcgatgtggcagtggaaggcccagacgccggggttgtcggcccggaaccg 303 ||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct: 28547 ctcgatgtggcagtggaagagccagacgccggggttgtcggcttggaaccg 28597
>ref|XM_502500.1| Yarrowia lipolytica CLIB122, YALI0D06754g predicted mRNA Length = 1770 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 253 ctcgatgtggcagtggaaggcccagacgccggggttgtcggcccggaaccgcagc 307 |||||| ||||| |||||| ||| ||||||||||||| ||||||| |||||||| Sbjct: 1572 ctcgatatggcaatggaagaaccacacgccggggttgttggcccggtaccgcagc 1518
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 253 ctcgatgtggcagtggaaggcccagacgccggggttgtc 291 ||||| ||||||||||||| |||||||||||||||||| Sbjct: 941818 ctcgaggtggcagtggaagaaccagacgccggggttgtc 941780
>ref|NM_209581.1| Eremothecium gossypii ADR132Wp (ADR132W), mRNA Length = 1881 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 253 ctcgatgtggcagtggaaggcccagacgccggggttgtc 291 ||||| ||||||||||||| |||||||||||||||||| Sbjct: 1470 ctcgaggtggcagtggaagaaccagacgccggggttgtc 1432
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 253 ctcgatgtggcagtggaaggcccagacgccggggttgtcggcccggaaccgcagc 307 |||||| ||||| |||||| ||| ||||||||||||| ||||||| |||||||| Sbjct: 866421 ctcgatatggcaatggaagaaccacacgccggggttgttggcccggtaccgcagc 866475
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 258 tgtggcagtggaaggcccagacgccggggttgtcggc 294 ||||||||||||| |||||| ||||||| |||||||| Sbjct: 2387966 tgtggcagtggaacgcccagtcgccgggattgtcggc 2388002
>gb|AF202460.1| Capsicum annuum ascorbic acid oxidase mRNA, partial cds Length = 1007 Score = 48.1 bits (24), Expect = 0.022 Identities = 63/76 (82%) Strand = Plus / Minus Query: 230 cccatgcccatgaagaagtgcgcctcgatgtggcagtggaaggcccagacgccggggttg 289 ||||| ||||||||||| || | ||| || ||||| ||||||||||| || || || || Sbjct: 707 cccattcccatgaagaaatgtgactcaatatggcaatggaaggcccaaactccaggatta 648 Query: 290 tcggcccggaaccgca 305 |||||||| ||||||| Sbjct: 647 tcggcccgaaaccgca 632
>gb|AE005773.1| Caulobacter crescentus CB15 section 99 of 359 of the complete genome Length = 10431 Score = 48.1 bits (24), Expect = 0.022 Identities = 33/36 (91%) Strand = Plus / Minus Query: 260 tggcagtggaaggcccagacgccggggttgtcggcc 295 |||||||||||||||||| ||||||| | ||||||| Sbjct: 7492 tggcagtggaaggcccagtcgccgggctcgtcggcc 7457
>gb|DQ464016.1| Phanerochaete chrysosporium strain RP78 Fet3 protein mRNA, complete cds Length = 1887 Score = 46.1 bits (23), Expect = 0.086 Identities = 35/39 (89%) Strand = Plus / Minus Query: 253 ctcgatgtggcagtggaaggcccagacgccggggttgtc 291 ||||||||||||||||||| ||| ||||||||||||| Sbjct: 1497 ctcgatgtggcagtggaagatccacgcgccggggttgtc 1459
>emb|AJ571698.1|MAL571698 Melanocarpus albomyces lac1 gene for laccase, exons 1-6 Length = 4450 Score = 46.1 bits (23), Expect = 0.086 Identities = 35/39 (89%) Strand = Plus / Minus Query: 255 cgatgtggcagtggaaggcccagacgccggggttgtcgg 293 ||||||||||||||||| |||| |||| |||||||||| Sbjct: 3692 cgatgtggcagtggaagagccaggcgcccgggttgtcgg 3654
>ref|XM_365454.1| Magnaporthe grisea 70-15 hypothetical protein (MG02156.4) partial mRNA Length = 1800 Score = 44.1 bits (22), Expect = 0.34 Identities = 37/42 (88%) Strand = Plus / Minus Query: 254 tcgatgtggcagtggaaggcccagacgccggggttgtcggcc 295 |||||||||||||||||| |||| | || |||||||||||| Sbjct: 1469 tcgatgtggcagtggaagagccaggcacccgggttgtcggcc 1428
>emb|AJ428491.1|CPU428491 Claviceps purpurea cpmco1 gene for putative multicopperoxidase, exons 1-4 Length = 3611 Score = 44.1 bits (22), Expect = 0.34 Identities = 37/42 (88%) Strand = Plus / Minus Query: 254 tcgatgtggcagtggaaggcccagacgccggggttgtcggcc 295 |||||||||||||||||| ||| || |||||||| |||||| Sbjct: 2652 tcgatgtggcagtggaagagccacacaccggggttatcggcc 2611
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 185 tccgggagcttgccgacgcgc 205 ||||||||||||||||||||| Sbjct: 2980441 tccgggagcttgccgacgcgc 2980421
>ref|XM_366800.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG02876.4) partial mRNA Length = 1788 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 255 cgatgtggcagtggaaggcccagacgccggggttgtc 291 |||||||||||||||| | |||||| |||| |||||| Sbjct: 1633 cgatgtggcagtggaacggccagactccggcgttgtc 1597
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 259 gtggcagtggaaggcccagacgccg 283 ||||||||||||||||||| ||||| Sbjct: 793357 gtggcagtggaaggcccagtcgccg 793333
>gb|AY532139.1| Phanerochaete chrysosporium strain RP-78 multicopper oxidase 2A (mco2) mRNA, complete cds Length = 1854 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 259 gtggcagtggaaggcccagacgccggggttgtc 291 |||||||||||| ||||||| ||||||||||| Sbjct: 1722 gtggcagtggaatgcccagagcccggggttgtc 1690
>emb|BX248398.9| Human DNA sequence from clone RP6-137J22 on chromosome 1 Contains a novel gene, the gene for a novel protein similar to cyclophilin-LC (cyclophilin homolog overexpressed in liver cancer (chromosome 1 amplified sequence 2)) and a CpG island, complete sequence Length = 127263 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 tgtgaagaatgaatgaaatta 77 ||||||||||||||||||||| Sbjct: 105289 tgtgaagaatgaatgaaatta 105309
>emb|AL161613.23| Human DNA sequence from clone RP11-22J15 on chromosome 13 Contains the 5' end of the LATS2 gene for LATS, large tumor suppressor, homolog 2 (LATS (large tumor suppressor, Drosophila) homolog 2), a ribosomal protein S12 (40S ribosomal protein S12) (RPS12) pseudogene, a chromosome 9 open reading frame 12 (C9orf12) (INSP5K2, FLJ13161)pseudogene and two CpG islands, complete sequence Length = 113372 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 aaaataaataattgaatgtga 61 ||||||||||||||||||||| Sbjct: 50524 aaaataaataattgaatgtga 50544
>emb|AL022240.8|HS328E19 Human DNA sequence from clone RP3-328E19 on chromosome 1q12-21.2 Contains the 5' end of a novel gene, a peptidylprolyl isomerase A (cyclophilin A) (PPIA) pseudogene, a novel pseudogene, the 3' end of a novel gene and a CpG island, complete sequence Length = 97619 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 tgtgaagaatgaatgaaatta 77 ||||||||||||||||||||| Sbjct: 42510 tgtgaagaatgaatgaaatta 42530
>emb|Y10225.1|CMAO2 C.melo ao2 gene, partial Length = 1997 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Minus Query: 308 gccgtccagccgtaggggtgcaccgccaccgtgttcttcat 348 |||||||| || || ||||||| || ||||||||||||||| Sbjct: 1222 gccgtccatccatatgggtgcaacggcaccgtgttcttcat 1182
>gb|DQ075674.1| Hirsutella homalodisca 28S ribosomal RNA gene, partial sequence Length = 588 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 gaacgccggcgggtgcgccgc 387 ||||||||||||||||||||| Sbjct: 427 gaacgccggcgggtgcgccgc 407
>gb|AC174352.7| Medicago truncatula clone mth2-7o1, complete sequence Length = 121626 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 56 atgtgaagaatgaatgaaatt 76 ||||||||||||||||||||| Sbjct: 53067 atgtgaagaatgaatgaaatt 53087
>gb|AC011884.8| Homo sapiens chromosome , clone RP11-17N6, complete sequence Length = 163009 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 47 aataattgaatgtgaagaatg 67 ||||||||||||||||||||| Sbjct: 3897 aataattgaatgtgaagaatg 3917
>gb|AF094698.1|AF094698 Sphoeroides nephelus immune-type receptor 1-5, 7 and 9-26 genes, complete cds and immune-type receptor 6 and 8, pseudogenes, complete sequence Length = 113426 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 334 caccgtgttcttcatcacggg 354 ||||||||||||||||||||| Sbjct: 15665 caccgtgttcttcatcacggg 15645
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 206 tcgatgccctcctcgaaggcg 226 ||||||||||||||||||||| Sbjct: 4136824 tcgatgccctcctcgaaggcg 4136804
>emb|BX276095.7| Zebrafish DNA sequence from clone CH211-225H17, complete sequence Length = 197554 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 47 aataattgaatgtgaagaatgaatgaaat 75 |||||||||||| ||||||||||||||| Sbjct: 190567 aataattgaatgaaaagaatgaatgaaat 190595
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 ggagcttgccgacgcgctcga 209 ||||||||||||||||||||| Sbjct: 2536960 ggagcttgccgacgcgctcga 2536980
>gb|AY248746.1| Xanthomonas campestris pv. vesicatoria copper resistance gene cluster, complete sequence Length = 7652 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 258 tgtggcagtggaaggcccagacgcc 282 |||||||||||||||||||| |||| Sbjct: 1778 tgtggcagtggaaggcccagtcgcc 1802
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 5.3 Identities = 32/36 (88%) Strand = Plus / Minus Query: 260 tggcagtggaaggcccagacgccggggttgtcggcc 295 ||||||||||| |||||| |||| || ||||||||| Sbjct: 722932 tggcagtggaacgcccagtcgcccggattgtcggcc 722897
>gb|AY971876.1| Lycopersicon esculentum ascorbate oxidase (AO) mRNA, complete cds Length = 1984 Score = 40.1 bits (20), Expect = 5.3 Identities = 56/68 (82%) Strand = Plus / Minus Query: 230 cccatgcccatgaagaagtgcgcctcgatgtggcagtggaaggcccagacgccggggttg 289 ||||| ||||||||||| || | ||| || ||||| ||||||||||| || || || || Sbjct: 1709 cccattcccatgaagaaatgtgactcaatatggcaatggaaggcccaaactcctggatta 1650 Query: 290 tcggcccg 297 |||||||| Sbjct: 1649 tcggcccg 1642
>gb|AC119877.9| Mus musculus chromosome 3, clone RP24-324H23, complete sequence Length = 155784 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 atgtggcagtggaaggccca 276 |||||||||||||||||||| Sbjct: 96082 atgtggcagtggaaggccca 96101
>ref|XM_612858.2| PREDICTED: Bos taurus similar to achaete-scute complex-like 4 (LOC540730), mRNA Length = 507 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 gcgccgtccagccgtagggg 325 |||||||||||||||||||| Sbjct: 191 gcgccgtccagccgtagggg 172
>gb|AC092143.4| Homo sapiens chromosome 16 clone RP11-566K11, complete sequence Length = 146534 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 aggggtgcaccgccaccgtg 340 |||||||||||||||||||| Sbjct: 9091 aggggtgcaccgccaccgtg 9110
>gb|AC018464.9| Homo sapiens BAC clone RP11-328M22 from 7, complete sequence Length = 155862 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 aaataaataattgaatgtga 61 |||||||||||||||||||| Sbjct: 114817 aaataaataattgaatgtga 114836
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 gacgcgctcgatgccctcct 218 |||||||||||||||||||| Sbjct: 1371853 gacgcgctcgatgccctcct 1371872
>emb|AL139425.8| Human DNA sequence from clone RP4-788L13 on chromosome 1p21.1-21.3 Contains the 3' end of gene for plasticity related gene 1 (PRG), complete sequence Length = 68858 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 aagaatgaatgaaattatgt 80 |||||||||||||||||||| Sbjct: 7286 aagaatgaatgaaattatgt 7267
>emb|BX005227.12| Zebrafish DNA sequence from clone CH211-286C23 in linkage group 21, complete sequence Length = 187709 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 aatgaatgaaattatgtgag 83 |||||||||||||||||||| Sbjct: 138253 aatgaatgaaattatgtgag 138234
>emb|BX649396.3| Zebrafish DNA sequence from clone DKEY-177E22 in linkage group 9, complete sequence Length = 46907 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 47 aataattgaatgtgaagaatgaatgaaa 74 |||||||||||| |||||||||||||| Sbjct: 29644 aataattgaatgaaaagaatgaatgaaa 29671
>tpg|BK005019.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY transcription factor 16 (WRKY16) gene, complete cds Length = 4090 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gtaggggtgcaccgccaccg 338 |||||||||||||||||||| Sbjct: 99 gtaggggtgcaccgccaccg 118
>gb|AC092385.4| Homo sapiens chromosome 16 clone RP4-597G12, complete sequence Length = 97218 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 aggggtgcaccgccaccgtg 340 |||||||||||||||||||| Sbjct: 19513 aggggtgcaccgccaccgtg 19494
>gb|AC007754.4|AC007754 Drosophila melanogaster, chromosome 3R, region 87E-87E, BAC clone BACR05K08, complete sequence Length = 188967 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 aatattttctcgcacgtttt 128 |||||||||||||||||||| Sbjct: 183265 aatattttctcgcacgtttt 183246
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 ttgccgacgcgctcgatgcc 213 |||||||||||||||||||| Sbjct: 2630709 ttgccgacgcgctcgatgcc 2630690 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 334 caccgtgttcttcatcacgggatc 357 |||||||||||||||| ||||||| Sbjct: 1834641 caccgtgttcttcatctcgggatc 1834664
>gb|AC008360.3|AC008360 Drosophila melanogaster, chromosome 3R, region 87E-87F, BAC clone BACR06H18, complete sequence Length = 194672 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 aatattttctcgcacgtttt 128 |||||||||||||||||||| Sbjct: 64986 aatattttctcgcacgtttt 64967
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gtaggggtgcaccgccaccg 338 |||||||||||||||||||| Sbjct: 27194063 gtaggggtgcaccgccaccg 27194044
>gb|AY351908.2| Hortaea acidophila laccase I gene, complete cds Length = 1998 Score = 40.1 bits (20), Expect = 5.3 Identities = 35/40 (87%) Strand = Plus / Minus Query: 255 cgatgtggcagtggaaggcccagacgccggggttgtcggc 294 ||||||||||||| | | ||||||||| ||||||||||| Sbjct: 1843 cgatgtggcagtgcagcggccagacgcccgggttgtcggc 1804
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 259 gtggcagtggaaggcccagacgcc 282 ||||||||||||||||||| |||| Sbjct: 954823 gtggcagtggaaggcccagtcgcc 954800
>dbj|AP003222.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0003E08 Length = 135014 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gtaggggtgcaccgccaccg 338 |||||||||||||||||||| Sbjct: 101741 gtaggggtgcaccgccaccg 101722
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 cgatgccctcctcgaaggcg 226 |||||||||||||||||||| Sbjct: 2260096 cgatgccctcctcgaaggcg 2260115
>dbj|AB083032.1| Glycine max mRNA for syringolide-induced protein B13-1-1, partial cds Length = 1945 Score = 40.1 bits (20), Expect = 5.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 321 aggggtgcaccgccaccgtgttcttcat 348 |||||||||||| |||||||||||||| Sbjct: 1522 aggggtgcaccggaaccgtgttcttcat 1495
>emb|CR394535.19| Zebrafish DNA sequence from clone CH211-198P19 in linkage group 3, complete sequence Length = 190173 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 cgaaaataaataattgaatg 58 |||||||||||||||||||| Sbjct: 153555 cgaaaataaataattgaatg 153574
>ref|NM_208530.1| Eremothecium gossypii ABR228Cp (ABR228C), mRNA Length = 1839 Score = 40.1 bits (20), Expect = 5.3 Identities = 41/48 (85%) Strand = Plus / Minus Query: 260 tggcagtggaaggcccagacgccggggttgtcggcccggaaccgcagc 307 |||||||||||| ||| || ||||| ||||| |||||||| |||||| Sbjct: 1472 tggcagtggaagatccacacaccgggattgtccgcccggaaacgcagc 1425
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 ttgctgacgcagcgcgtgat 180 |||||||||||||||||||| Sbjct: 474993 ttgctgacgcagcgcgtgat 475012
>gb|AE003699.3| Drosophila melanogaster chromosome 3R, section 37 of 118 of the complete sequence Length = 208424 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 aatattttctcgcacgtttt 128 |||||||||||||||||||| Sbjct: 199851 aatattttctcgcacgtttt 199832
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 cgatgccctcctcgaaggcg 226 |||||||||||||||||||| Sbjct: 2172543 cgatgccctcctcgaaggcg 2172562
>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II, complete sequence Length = 867699 Score = 40.1 bits (20), Expect = 5.3 Identities = 41/48 (85%) Strand = Plus / Plus Query: 260 tggcagtggaaggcccagacgccggggttgtcggcccggaaccgcagc 307 |||||||||||| ||| || ||||| ||||| |||||||| |||||| Sbjct: 830133 tggcagtggaagatccacacaccgggattgtccgcccggaaacgcagc 830180 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,862,957 Number of Sequences: 3902068 Number of extensions: 3862957 Number of successful extensions: 71887 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70805 Number of HSP's gapped (non-prelim): 1079 length of query: 399 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 377 effective length of database: 17,147,199,772 effective search space: 6464494314044 effective search space used: 6464494314044 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
