ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart52a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds 165 3e-38
2emb|CR702474.2|CNS0G4ZA Tetraodon nigroviridis full-length cDNA 42 0.25
3emb|CR702005.2|CNS0G4M9 Tetraodon nigroviridis full-length cDNA 42 0.25
4emb|CR701878.2|CNS0G4IQ Tetraodon nigroviridis full-length cDNA 42 0.25
5emb|CR700458.2|CNS0G3FA Tetraodon nigroviridis full-length cDNA 42 0.25
6emb|CR698963.2|CNS0G29R Tetraodon nigroviridis full-length cDNA 42 0.25
7emb|CR697642.2|CNS0G192 Tetraodon nigroviridis full-length cDNA 42 0.25
8emb|CR696608.2|CNS0G0GC Tetraodon nigroviridis full-length cDNA 42 0.25
9emb|CR694961.2|CNS0FZ6L Tetraodon nigroviridis full-length cDNA 42 0.25
10emb|CR693847.2|CNS0FYBN Tetraodon nigroviridis full-length cDNA 42 0.25
11emb|CR693583.2|CNS0FY4B Tetraodon nigroviridis full-length cDNA 42 0.25
12emb|CR693474.2|CNS0FY1A Tetraodon nigroviridis full-length cDNA 42 0.25
13emb|CR690780.2|CNS0FVYG Tetraodon nigroviridis full-length cDNA 42 0.25
14emb|CR689984.2|CNS0FVCC Tetraodon nigroviridis full-length cDNA 42 0.25
15emb|CR686426.2|CNS0FSLI Tetraodon nigroviridis full-length cDNA 42 0.25
16emb|CR685561.2|CNS0FRXH Tetraodon nigroviridis full-length cDNA 42 0.25
17emb|CR685520.2|CNS0FRWC Tetraodon nigroviridis full-length cDNA 42 0.25
18emb|CR684429.2|CNS0FR21 Tetraodon nigroviridis full-length cDNA 42 0.25
19gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 0.99
20gb|CP000216.1| Drosophila melanogaster genomic scaffold 21100002... 40 0.99
21gb|AC004422.1|AC004422 Drosophila melanogaster (P1 DS08493 (D141... 40 0.99
22gb|AC127297.4| Mus musculus BAC clone RP23-395B13 from chromosom... 40 0.99
23gb|AC167173.4| Mus musculus BAC clone RP23-30D21 from chromosome... 38 3.9
24gb|AC165252.2| Mus musculus BAC clone RP23-355O12 from chromosom... 38 3.9
25gb|AC139292.4| Mus musculus BAC clone RP24-279K6 from chromosome... 38 3.9
26emb|CR932966.2| Medicago truncatula chromosome 5 clone mth2-45l2... 38 3.9
27gb|AC100781.2| Homo sapiens chromosome 18, clone RP11-124E7, com... 38 3.9
28dbj|AK149286.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 38 3.9
29gb|AC013361.6|AC013361 Homo sapiens chromosome 18, clone RP11-36... 38 3.9
30gb|AC107307.3| Homo sapiens 3 BAC RP11-657G2 (Roswell Park Cance... 38 3.9
31gb|AC019041.8| Homo sapiens BAC clone RP11-4K20 from 2, complete... 38 3.9
32emb|BX248515.4| Zebrafish DNA sequence from clone DKEY-177P2 in ... 38 3.9
33gb|AY613856.1| Oikopleura dioica clone BACOIKO008 5xo15, complet... 38 3.9
34gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 38 3.9

>dbj|AB009308.2| Hordeum vulgare HvPIP1;3 mRNA, complete cds
          Length = 1285

 Score =  165 bits (83), Expect = 3e-38
 Identities = 89/91 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1    ctggtacaatgcaaaaggtagggaaagtagtacagcaggtactatactgactgaaactcc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1212 ctggtacaatgcaaaaggtagggaaagtagtacagcaggtactatactgactgaaactcg 1153

                                           
Query: 61   caaacttgaacaggcgacgctgccggcaggc 91
            || ||||||||||||||||||||||||||||
Sbjct: 1152 cagacttgaacaggcgacgctgccggcaggc 1122



to top

>emb|CR702474.2|CNS0G4ZA Tetraodon nigroviridis full-length cDNA
          Length = 969

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 21 gggaaagtagtacagcaggta 41
          |||||||||||||||||||||
Sbjct: 64 gggaaagtagtacagcaggta 44



to top

>emb|CR702005.2|CNS0G4M9 Tetraodon nigroviridis full-length cDNA
          Length = 970

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 21 gggaaagtagtacagcaggta 41
          |||||||||||||||||||||
Sbjct: 64 gggaaagtagtacagcaggta 44



to top

>emb|CR701878.2|CNS0G4IQ Tetraodon nigroviridis full-length cDNA
          Length = 934

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 21 gggaaagtagtacagcaggta 41
          |||||||||||||||||||||
Sbjct: 30 gggaaagtagtacagcaggta 10



to top

>emb|CR700458.2|CNS0G3FA Tetraodon nigroviridis full-length cDNA
          Length = 965

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 21 gggaaagtagtacagcaggta 41
          |||||||||||||||||||||
Sbjct: 64 gggaaagtagtacagcaggta 44



to top

>emb|CR698963.2|CNS0G29R Tetraodon nigroviridis full-length cDNA
          Length = 969

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 21 gggaaagtagtacagcaggta 41
          |||||||||||||||||||||
Sbjct: 64 gggaaagtagtacagcaggta 44



to top

>emb|CR697642.2|CNS0G192 Tetraodon nigroviridis full-length cDNA
          Length = 961

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 21 gggaaagtagtacagcaggta 41
          |||||||||||||||||||||
Sbjct: 56 gggaaagtagtacagcaggta 36



to top

>emb|CR696608.2|CNS0G0GC Tetraodon nigroviridis full-length cDNA
          Length = 967

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 21 gggaaagtagtacagcaggta 41
          |||||||||||||||||||||
Sbjct: 62 gggaaagtagtacagcaggta 42



to top

>emb|CR694961.2|CNS0FZ6L Tetraodon nigroviridis full-length cDNA
          Length = 969

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 21 gggaaagtagtacagcaggta 41
          |||||||||||||||||||||
Sbjct: 64 gggaaagtagtacagcaggta 44



to top

>emb|CR693847.2|CNS0FYBN Tetraodon nigroviridis full-length cDNA
          Length = 964

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 21 gggaaagtagtacagcaggta 41
          |||||||||||||||||||||
Sbjct: 63 gggaaagtagtacagcaggta 43



to top

>emb|CR693583.2|CNS0FY4B Tetraodon nigroviridis full-length cDNA
          Length = 964

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 21 gggaaagtagtacagcaggta 41
          |||||||||||||||||||||
Sbjct: 63 gggaaagtagtacagcaggta 43



to top

>emb|CR693474.2|CNS0FY1A Tetraodon nigroviridis full-length cDNA
          Length = 934

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 21 gggaaagtagtacagcaggta 41
          |||||||||||||||||||||
Sbjct: 50 gggaaagtagtacagcaggta 30



to top

>emb|CR690780.2|CNS0FVYG Tetraodon nigroviridis full-length cDNA
          Length = 967

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 21 gggaaagtagtacagcaggta 41
          |||||||||||||||||||||
Sbjct: 62 gggaaagtagtacagcaggta 42



to top

>emb|CR689984.2|CNS0FVCC Tetraodon nigroviridis full-length cDNA
          Length = 935

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 21 gggaaagtagtacagcaggta 41
          |||||||||||||||||||||
Sbjct: 30 gggaaagtagtacagcaggta 10



to top

>emb|CR686426.2|CNS0FSLI Tetraodon nigroviridis full-length cDNA
          Length = 960

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 21 gggaaagtagtacagcaggta 41
          |||||||||||||||||||||
Sbjct: 55 gggaaagtagtacagcaggta 35



to top

>emb|CR685561.2|CNS0FRXH Tetraodon nigroviridis full-length cDNA
          Length = 961

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 21 gggaaagtagtacagcaggta 41
          |||||||||||||||||||||
Sbjct: 55 gggaaagtagtacagcaggta 35



to top

>emb|CR685520.2|CNS0FRWC Tetraodon nigroviridis full-length cDNA
          Length = 964

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 21 gggaaagtagtacagcaggta 41
          |||||||||||||||||||||
Sbjct: 64 gggaaagtagtacagcaggta 44



to top

>emb|CR684429.2|CNS0FR21 Tetraodon nigroviridis full-length cDNA
          Length = 975

 Score = 42.1 bits (21), Expect = 0.25
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 21 gggaaagtagtacagcaggta 41
          |||||||||||||||||||||
Sbjct: 68 gggaaagtagtacagcaggta 48



to top

>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 0.99
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 68      gaacaggcgacgctgccggc 87
               ||||||||||||||||||||
Sbjct: 1380459 gaacaggcgacgctgccggc 1380478



to top

>gb|CP000216.1| Drosophila melanogaster genomic scaffold 211000022280782
          Length = 122665

 Score = 40.1 bits (20), Expect = 0.99
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    ctgactgaaactcccaaact 66
             ||||||||||||||||||||
Sbjct: 28495 ctgactgaaactcccaaact 28514



to top

>gb|AC004422.1|AC004422 Drosophila melanogaster (P1 DS08493 (D141)) DNA sequence, complete
             sequence
          Length = 77137

 Score = 40.1 bits (20), Expect = 0.99
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    ctgactgaaactcccaaact 66
             ||||||||||||||||||||
Sbjct: 18548 ctgactgaaactcccaaact 18567



to top

>gb|AC127297.4| Mus musculus BAC clone RP23-395B13 from chromosome 3, complete sequence
          Length = 222889

 Score = 40.1 bits (20), Expect = 0.99
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     acaatgcaaaaggtagggaa 25
             ||||||||||||||||||||
Sbjct: 94243 acaatgcaaaaggtagggaa 94262



to top

>gb|AC167173.4| Mus musculus BAC clone RP23-30D21 from chromosome 3, complete sequence
          Length = 203513

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 32    acagcaggtactatactgactga 54
             ||||||| |||||||||||||||
Sbjct: 82257 acagcagatactatactgactga 82279



to top

>gb|AC165252.2| Mus musculus BAC clone RP23-355O12 from chromosome 16, complete
             sequence
          Length = 178619

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    aaaaggtagggaaagtagt 31
             |||||||||||||||||||
Sbjct: 63147 aaaaggtagggaaagtagt 63165



to top

>gb|AC139292.4| Mus musculus BAC clone RP24-279K6 from chromosome 3, complete sequence
          Length = 165051

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 32    acagcaggtactatactgactga 54
             ||||||| |||||||||||||||
Sbjct: 26138 acagcagatactatactgactga 26116



to top

>emb|CR932966.2| Medicago truncatula chromosome 5 clone mth2-45l22, COMPLETE SEQUENCE
          Length = 112211

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 2     tggtacaatgcaaaaggta 20
             |||||||||||||||||||
Sbjct: 39741 tggtacaatgcaaaaggta 39723



to top

>gb|AC100781.2| Homo sapiens chromosome 18, clone RP11-124E7, complete sequence
          Length = 158180

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 51     ctgaaactcccaaacttga 69
              |||||||||||||||||||
Sbjct: 100342 ctgaaactcccaaacttga 100324



to top

>dbj|AK149286.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
            clone:A930011E23 product:golgi phosphoprotein 4, full
            insert sequence
          Length = 5233

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 32   acagcaggtactatactgactga 54
            ||||||| |||||||||||||||
Sbjct: 5070 acagcagatactatactgactga 5048



to top

>gb|AC013361.6|AC013361 Homo sapiens chromosome 18, clone RP11-367D23, complete sequence
          Length = 154713

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 51    ctgaaactcccaaacttga 69
             |||||||||||||||||||
Sbjct: 74907 ctgaaactcccaaacttga 74925



to top

>gb|AC107307.3| Homo sapiens 3 BAC RP11-657G2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 158066

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 1     ctggtacaatgcaaaaggt 19
             |||||||||||||||||||
Sbjct: 51001 ctggtacaatgcaaaaggt 51019



to top

>gb|AC019041.8| Homo sapiens BAC clone RP11-4K20 from 2, complete sequence
          Length = 183358

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 57     ctcccaaacttgaacaggc 75
              |||||||||||||||||||
Sbjct: 114698 ctcccaaacttgaacaggc 114716



to top

>emb|BX248515.4| Zebrafish DNA sequence from clone DKEY-177P2 in linkage group 20,
             complete sequence
          Length = 212105

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 50    actgaaactcccaaacttg 68
             |||||||||||||||||||
Sbjct: 75828 actgaaactcccaaacttg 75810



to top

>gb|AY613856.1| Oikopleura dioica clone BACOIKO008 5xo15, complete sequence
          Length = 174913

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 22     ggaaagtagtacagcaggtacta 44
              ||||||||| |||||||||||||
Sbjct: 151246 ggaaagtagcacagcaggtacta 151224



to top

>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 73      ggcgacgctgccggcaggc 91
               |||||||||||||||||||
Sbjct: 2595820 ggcgacgctgccggcaggc 2595838


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 606,246
Number of Sequences: 3902068
Number of extensions: 606246
Number of successful extensions: 40667
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40579
Number of HSP's gapped (non-prelim): 88
length of query: 91
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 70
effective length of database: 17,151,101,840
effective search space: 1200577128800
effective search space used: 1200577128800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top