ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart52a10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF509746.1| Hordeum vulgare subsp. spontaneum OSU6 receptor-like kinase gene, complete cds Length = 2513 Score = 95.6 bits (48), Expect = 6e-17 Identities = 72/80 (90%) Strand = Plus / Minus Query: 74 taaaataagtggcttaagcttagtacaattttatactagaactagtacaaagtcgaaaca 133 ||||||||||| |||||||||| ||||||||||||||||| |||||||||||| || ||| Sbjct: 1392 taaaataagtgtcttaagcttaatacaattttatactagagctagtacaaagttgagaca 1333 Query: 134 gatattttgggacagaggga 153 ||||||||||| |||||| Sbjct: 1332 attattttgggacggaggga 1313
>gb|AF509745.1| Hordeum vulgare subsp. vulgare Steptoe receptor-like kinase gene, complete cds Length = 2550 Score = 95.6 bits (48), Expect = 6e-17 Identities = 72/80 (90%) Strand = Plus / Minus Query: 74 taaaataagtggcttaagcttagtacaattttatactagaactagtacaaagtcgaaaca 133 ||||||||||| |||||||||| ||||||||||||||||| |||||||||||| || ||| Sbjct: 1417 taaaataagtgtcttaagcttaatacaattttatactagagctagtacaaagttgagaca 1358 Query: 134 gatattttgggacagaggga 153 ||||||||||| |||||| Sbjct: 1357 attattttgggacggaggga 1338
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence Length = 108608 Score = 95.6 bits (48), Expect = 6e-17 Identities = 87/100 (87%) Strand = Plus / Plus Query: 52 atatatgctactccctccggtttaaaataagtggcttaagcttagtacaattttatacta 111 ||||||||||||||||||| | |||||||||| |||||||||| ||||||||| ||||| Sbjct: 62256 atatatgctactccctccgttccaaaataagtgtcttaagcttaatacaattttgtacta 62315 Query: 112 gaactagtacaaagtcgaaacagatattttgggacagagg 151 | ||| |||||||| || |||| ||||||||||| |||| Sbjct: 62316 aatctaatacaaagttgagacagttattttgggacggagg 62355
>dbj|AB024006.1| Hordeum vulgare naat-B and naat-A genes for nicotianamine aminotransferase, complete cds Length = 10966 Score = 95.6 bits (48), Expect = 6e-17 Identities = 72/80 (90%) Strand = Plus / Plus Query: 74 taaaataagtggcttaagcttagtacaattttatactagaactagtacaaagtcgaaaca 133 |||||||| || |||| ||||| |||||||||||||||| |||||||||||| |||||| Sbjct: 8917 taaaataaatgtcttacacttagcacaattttatactagatctagtacaaagttgaaaca 8976 Query: 134 gatattttgggacagaggga 153 | |||||||||||||||||| Sbjct: 8977 gttattttgggacagaggga 8996
>gb|AY133251.1|AY133250S2 Hordeum vulgare subsp. vulgare starch synthase II gene, exon 9 and complete cds Length = 3856 Score = 91.7 bits (46), Expect = 1e-15 Identities = 82/94 (87%) Strand = Plus / Plus Query: 60 tactccctccggtttaaaataagtggcttaagcttagtacaattttatactagaactagt 119 ||||||||||| | |||||||||| ||| ||| |||||||||||| ||||||| ||||| Sbjct: 905 tactccctccgttccaaaataagtgtcttgagcgtagtacaattttgtactagagctagt 964 Query: 120 acaaagtcgaaacagatattttgggacagaggga 153 ||||||| || |||| ||||||||||| |||||| Sbjct: 965 acaaagttgagacagttattttgggacggaggga 998
>gb|DQ175992.1| Hordeum vulgare subsp. vulgare clone 65-22A-RB flanking T-DNA insertion sequence Length = 267 Score = 91.7 bits (46), Expect = 1e-15 Identities = 82/94 (87%) Strand = Plus / Plus Query: 60 tactccctccggtttaaaataagtggcttaagcttagtacaattttatactagaactagt 119 ||||| ||||| ||||||||||||| ||||||||||||| |||||||||||||| |||| Sbjct: 54 tactctctccgttttaaaataagtgtcttaagcttagtataattttatactagagctaga 113 Query: 120 acaaagtcgaaacagatattttgggacagaggga 153 ||||||| | ||| ||||||||||| |||||| Sbjct: 114 acaaagttaagacaattattttgggacggaggga 147
>emb|AJ234485.1|HVU234485 Hordeum vulgare genomic DNA fragment; clone MWG0526.rev Length = 379 Score = 91.7 bits (46), Expect = 1e-15 Identities = 82/94 (87%) Strand = Plus / Plus Query: 60 tactccctccggtttaaaataagtggcttaagcttagtacaattttatactagaactagt 119 ||||||||||| | |||||||||| ||||| |||||||||||||| ||||||| ||||| Sbjct: 118 tactccctccgtctcaaaataagtgtcttaatcttagtacaattttgtactagagctagt 177 Query: 120 acaaagtcgaaacagatattttgggacagaggga 153 |||| || || |||| ||||||| |||||||||| Sbjct: 178 acaatgttgagacagttattttgagacagaggga 211
>emb|AJ249141.1|HVU249141 Hordeum vulgare mRNA for MADS-box protein (m1 gene) Length = 1086 Score = 79.8 bits (40), Expect = 4e-12 Identities = 70/80 (87%) Strand = Plus / Minus Query: 74 taaaataagtggcttaagcttagtacaattttatactagaactagtacaaagtcgaaaca 133 ||||||||||| |||||||||||||||| ||| ||||||| ||| |||||||| || ||| Sbjct: 996 taaaataagtgtcttaagcttagtacaactttgtactagagctaatacaaagttgagaca 937 Query: 134 gatattttgggacagaggga 153 | ||||||| ||| |||||| Sbjct: 936 gttattttgagacggaggga 917
>gb|AF509744.1| Hordeum vulgare subsp. vulgare Morex receptor-like kinase gene, complete cds Length = 4643 Score = 79.8 bits (40), Expect = 4e-12 Identities = 71/80 (88%), Gaps = 1/80 (1%) Strand = Plus / Minus Query: 74 taaaataagtggcttaagcttagtacaattttatactagaactagtacaaagtcgaaaca 133 ||||||||||| |||||||||| |||||||| |||||||| |||||||||||| || ||| Sbjct: 2117 taaaataagtgtcttaagcttaatacaattt-atactagagctagtacaaagttgagaca 2059 Query: 134 gatattttgggacagaggga 153 ||||||||||| |||||| Sbjct: 2058 attattttgggacggaggga 2039
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 61.9 bits (31), Expect = 9e-07 Identities = 61/71 (85%) Strand = Plus / Minus Query: 75 aaaataagtggcttaagcttagtacaattttatactagaactagtacaaagtcgaaacag 134 ||||||| || || |||| |||||||| ||| |||||||||||||||||||| || ||| Sbjct: 50478 aaaataactgtctcaagcctagtacaactttgtactagaactagtacaaagttgagacac 50419 Query: 135 atattttggga 145 |||||||||| Sbjct: 50418 ttattttggga 50408
>emb|Z28347.1|HVPLASC1 H.vulgare (NK 1558) gene for plastocyanin Length = 1884 Score = 60.0 bits (30), Expect = 3e-06 Identities = 37/38 (97%), Gaps = 1/38 (2%) Strand = Plus / Minus Query: 89 aagcttagtacaattttatactagaactagtacaaagt 126 ||||||||||||||||||||||| |||||||||||||| Sbjct: 1884 aagcttagtacaattttatacta-aactagtacaaagt 1848
>gb|AY758234.1| Hordeum vulgare subsp. vulgare cultivar Morex BM5b gene, partial cds Length = 4954 Score = 54.0 bits (27), Expect = 2e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 76 aaataagtggcttaagcttagtacaattttatactagaactagtacaaagt 126 ||||||||| ||||||||||||| || ||| ||||||| ||||||||||| Sbjct: 3805 aaataagtgtcttaagcttagtataactttgtactagagatagtacaaagt 3855
>emb|X83518.1|HVKNOX3 H.vulgare Knox3 gene Length = 10815 Score = 54.0 bits (27), Expect = 2e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 75 aaaataagtggcttaagcttagtacaattttatactagaactagtacaaagtcgaaacag 134 ||||||| || || ||||||||||||| ||| || |||| |||||||||||| || ||| Sbjct: 7282 aaaataactgtctcaagcttagtacaactttgtagtagagctagtacaaagttgagacac 7223 Query: 135 atattttgggacagaggga 153 |||||||| | ||||||| Sbjct: 7222 ttattttggaagagaggga 7204
>gb|AY887088.1| Hordeum vulgare subsp. vulgare clone BAC 315I20 VRN-H1 (AP1b) pseudogene, partial sequence Length = 4018 Score = 54.0 bits (27), Expect = 2e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 76 aaataagtggcttaagcttagtacaattttatactagaactagtacaaagt 126 ||||||||| ||||||||||||| || ||| ||||||| ||||||||||| Sbjct: 3853 aaataagtgtcttaagcttagtataactttgtactagagatagtacaaagt 3903
>gb|DQ201146.1| Hordeum vulgare subsp. vulgare cultivar Kompolti korai phytochrome C (PhyC) gene, complete cds Length = 4914 Score = 52.0 bits (26), Expect = 8e-04 Identities = 44/50 (88%) Strand = Plus / Minus Query: 75 aaaataagtggcttaagcttagtacaattttatactagaactagtacaaa 124 |||||||||| || ||||| ||||||||||| || |||| |||||||||| Sbjct: 4029 aaaataagtgtctcaagctgagtacaattttgtaatagagctagtacaaa 3980
>gb|DQ238106.1| Hordeum vulgare subsp. vulgare cv. Morex phytochrome C (PhyC) gene, complete cds Length = 4938 Score = 52.0 bits (26), Expect = 8e-04 Identities = 44/50 (88%) Strand = Plus / Minus Query: 75 aaaataagtggcttaagcttagtacaattttatactagaactagtacaaa 124 |||||||||| || ||||| ||||||||||| || |||| |||||||||| Sbjct: 4029 aaaataagtgtctcaagctgagtacaattttgtaatagagctagtacaaa 3980
>gb|DQ201145.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo phytochrome C (PhyC) gene, complete cds Length = 4914 Score = 52.0 bits (26), Expect = 8e-04 Identities = 44/50 (88%) Strand = Plus / Minus Query: 75 aaaataagtggcttaagcttagtacaattttatactagaactagtacaaa 124 |||||||||| || ||||| ||||||||||| || |||| |||||||||| Sbjct: 4029 aaaataagtgtctcaagctgagtacaattttgtaatagagctagtacaaa 3980
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 Score = 48.1 bits (24), Expect = 0.013 Identities = 33/36 (91%) Strand = Plus / Minus Query: 91 gcttagtacaattttatactagaactagtacaaagt 126 ||||||||||| ||| ||||||| |||||||||||| Sbjct: 206087 gcttagtacaactttgtactagagctagtacaaagt 206052
>gb|AC146586.2| Medicago truncatula clone mth2-71m12, complete sequence Length = 109629 Score = 48.1 bits (24), Expect = 0.013 Identities = 30/32 (93%) Strand = Plus / Minus Query: 53 tatatgctactccctccggtttaaaataagtg 84 ||||| |||||||||||| ||||||||||||| Sbjct: 83188 tatatactactccctccgttttaaaataagtg 83157
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 48.1 bits (24), Expect = 0.013 Identities = 27/28 (96%) Strand = Plus / Minus Query: 136 tattttgggacagagggaatattatcaa 163 ||||||||||| |||||||||||||||| Sbjct: 20072118 tattttgggacggagggaatattatcaa 20072091 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 134 gatattttgggacagagggaatatta 159 |||||||||||||||||||| ||||| Sbjct: 27380934 gatattttgggacagagggagtatta 27380909 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 atattttgggacagagggaatatt 158 ||||||||||||||||| |||||| Sbjct: 13352152 atattttgggacagaggaaatatt 13352129 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatt 158 ||||||||||| |||||||||||| Sbjct: 7587804 atattttgggatagagggaatatt 7587827
>dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1657_A07 Length = 125217 Score = 48.1 bits (24), Expect = 0.013 Identities = 27/28 (96%) Strand = Plus / Minus Query: 136 tattttgggacagagggaatattatcaa 163 ||||||||||| |||||||||||||||| Sbjct: 36721 tattttgggacggagggaatattatcaa 36694
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.051 Identities = 23/23 (100%) Strand = Plus / Minus Query: 135 atattttgggacagagggaatat 157 ||||||||||||||||||||||| Sbjct: 11874778 atattttgggacagagggaatat 11874756 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatattat 160 ||||||||||||||||||| |||||| Sbjct: 17344219 atattttgggacagagggagtattat 17344244 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatta 159 ||||||||||| ||||||||||||| Sbjct: 21376949 atattttgggaaagagggaatatta 21376973 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatt 158 |||||| ||||||||||||||||| Sbjct: 2334477 atatttagggacagagggaatatt 2334500
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 46.1 bits (23), Expect = 0.051 Identities = 23/23 (100%) Strand = Plus / Minus Query: 48 aatcatatatgctactccctccg 70 ||||||||||||||||||||||| Sbjct: 16304735 aatcatatatgctactccctccg 16304713 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatta 159 ||||||||||||||||||| ||||| Sbjct: 6036942 atattttgggacagagggagtatta 6036966 Score = 42.1 bits (21), Expect = 0.79 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 attttgggacagagggaatat 157 ||||||||||||||||||||| Sbjct: 2767974 attttgggacagagggaatat 2767954 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 atattttgggacagagggaatatt 158 |||||||||||| ||||||||||| Sbjct: 24748402 atattttgggacggagggaatatt 24748379 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatt 158 |||||||||||| ||||||||||| Sbjct: 7022962 atattttgggacggagggaatatt 7022985
>dbj|AP005067.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0487H05 Length = 176057 Score = 46.1 bits (23), Expect = 0.051 Identities = 23/23 (100%) Strand = Plus / Minus Query: 48 aatcatatatgctactccctccg 70 ||||||||||||||||||||||| Sbjct: 139222 aatcatatatgctactccctccg 139200
>dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1705_A03 Length = 168689 Score = 46.1 bits (23), Expect = 0.051 Identities = 23/23 (100%) Strand = Plus / Minus Query: 135 atattttgggacagagggaatat 157 ||||||||||||||||||||||| Sbjct: 153063 atattttgggacagagggaatat 153041
>dbj|AP005487.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1212_C09 Length = 120818 Score = 46.1 bits (23), Expect = 0.051 Identities = 23/23 (100%) Strand = Plus / Minus Query: 135 atattttgggacagagggaatat 157 ||||||||||||||||||||||| Sbjct: 23923 atattttgggacagagggaatat 23901
>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence Length = 157488 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 133 agatattttgggacagagggaatatt 158 |||||||||||||| ||||||||||| Sbjct: 152987 agatattttgggacggagggaatatt 152962
>gb|AF488415.1| Triticum monococcum chromosome 7Am BAC 5K14 complete sequence Length = 168746 Score = 44.1 bits (22), Expect = 0.20 Identities = 52/62 (83%) Strand = Plus / Plus Query: 92 cttagtacaattttatactagaactagtacaaagtcgaaacagatattttgggacagagg 151 |||||||||| ||| ||||| | ||||||||| | || |||| ||||||||||| |||| Sbjct: 78687 cttagtacaactttgtactaaagttagtacaaacttgagacagttattttgggacggagg 78746 Query: 152 ga 153 || Sbjct: 78747 ga 78748
>gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0094K23, complete sequence Length = 167482 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 133 agatattttgggacagagggaatatt 158 |||||||||||||| ||||||||||| Sbjct: 29168 agatattttgggacggagggaatatt 29143
>emb|AL606610.3|OSJN00045 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E08, complete sequence Length = 106975 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatattat 160 |||||||| ||||||||||||||||| Sbjct: 87477 atattttgagacagagggaatattat 87502
>gb|AC026424.5| Homo sapiens chromosome 5 clone CTD-2174D2, complete sequence Length = 123003 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Plus Query: 170 tttatttgaaagaaacatgcat 191 |||||||||||||||||||||| Sbjct: 80521 tttatttgaaagaaacatgcat 80542
>gb|AY273797.1| Homo sapiens polymerase (DNA directed) kappa (POLK) gene, complete cds Length = 90905 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Minus Query: 170 tttatttgaaagaaacatgcat 191 |||||||||||||||||||||| Sbjct: 48925 tttatttgaaagaaacatgcat 48904
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatattat 160 |||||||| ||||||||||||||||| Sbjct: 19932669 atattttgagacagagggaatattat 19932694 Score = 42.1 bits (21), Expect = 0.79 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 tattttgggacagagggaata 156 ||||||||||||||||||||| Sbjct: 22200549 tattttgggacagagggaata 22200569 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 tgctactccctccggtttaaaata 80 |||||||||||||| ||||||||| Sbjct: 34964423 tgctactccctccgttttaaaata 34964446 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 tatgctactccctccggtttaaaa 78 |||||||||||||| ||||||||| Sbjct: 15960378 tatgctactccctctggtttaaaa 15960355
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 133 agatattttgggacagagggaatatt 158 |||||||||||||| ||||||||||| Sbjct: 19433761 agatattttgggacggagggaatatt 19433736 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 135 atattttgggacagagggaatattat 160 ||||||||||||||||||| |||||| Sbjct: 12041926 atattttgggacagagggattattat 12041901 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatta 159 ||||||||||||||||||| ||||| Sbjct: 17590566 atattttgggacagagggagtatta 17590590
>dbj|AP006460.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0003M19 Length = 171790 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 134 gatattttgggacagagggaatatta 159 |||||||||||||||||||| ||||| Sbjct: 86595 gatattttgggacagagggagtatta 86570
>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0441A12 Length = 185437 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 135 atattttgggacagagggaatattat 160 ||||||||||||||||||| |||||| Sbjct: 146406 atattttgggacagagggattattat 146381
>dbj|AP004647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1267_E11 Length = 117073 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatattat 160 ||||||||||||||||||| |||||| Sbjct: 27843 atattttgggacagagggagtattat 27868
>emb|AL732355.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0322F07, complete sequence Length = 100419 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatattat 160 ||||||||||||||||||| |||||| Sbjct: 12356 atattttgggacagagggagtattat 12381 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 136 tattttgggacagagggaatatta 159 |||||||||||||||||| ||||| Sbjct: 80305 tattttgggacagagggagtatta 80328
>dbj|AB036934.1| Homo sapiens GPBP, DINB1 genes for Thr/Ser kinase, DINB1, partial cds Length = 64466 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Minus Query: 170 tttatttgaaagaaacatgcat 191 |||||||||||||||||||||| Sbjct: 50824 tttatttgaaagaaacatgcat 50803
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 42.1 bits (21), Expect = 0.79 Identities = 61/73 (83%), Gaps = 1/73 (1%) Strand = Plus / Plus Query: 75 aaaataagtggcttaagcttagtacaat-tttatactagaactagtacaaagtcgaaaca 133 ||||||| || |||||| ||| ||||| ||| ||||||| |||||||||||| || ||| Sbjct: 31442 aaaataactgtcttaaggttaatacaaaatttgtactagagctagtacaaagtggagaca 31501 Query: 134 gatattttgggac 146 ||||||||||| Sbjct: 31502 cttattttgggac 31514
>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence Length = 153766 Score = 42.1 bits (21), Expect = 0.79 Identities = 54/65 (83%) Strand = Plus / Plus Query: 60 tactccctccggtttaaaataagtggcttaagcttagtacaattttatactagaactagt 119 |||||| |||| | ||||||||||| || || ||||||| || ||||||||| | ||| | Sbjct: 117103 tactccttccgttctaaaataagtgtctcaatcttagtataactttatactaaagctaat 117162 Query: 120 acaaa 124 ||||| Sbjct: 117163 acaaa 117167
>gb|AF056971.1| Arabidopsis thaliana ribulose-1,5-bisphosphate carboxylase (RBCL) gene, partial cds; and carboxyltransferase beta subunit (ACCD) gene, complete cds; chloroplast Length = 2944 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Minus Query: 173 atttgaaagaaacatgcatttttct 197 |||||||||||| |||||||||||| Sbjct: 2312 atttgaaagaaaaatgcatttttct 2288
>gb|AC135595.5| Oryza sativa chromosome 3 BAC OSJNBa0028F23 genomic sequence, complete sequence Length = 166888 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Minus Query: 135 atattttgggacagagggaatatta 159 ||||||||||||||||||| ||||| Sbjct: 110537 atattttgggacagagggagtatta 110513
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatta 159 ||||||||||||||||||| ||||| Sbjct: 33554543 atattttgggacagagggagtatta 33554567 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 52 atatatgctactccctccggtttaaaat 79 ||||||| ||||||||||| |||||||| Sbjct: 30018948 atatatgttactccctccgttttaaaat 30018975 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatt 158 ||||||||||||||||||| |||| Sbjct: 18266129 atattttgggacagagggagtatt 18266152 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 136 tattttgggacagagggaatatta 159 ||||||||||| |||||||||||| Sbjct: 2033763 tattttgggacggagggaatatta 2033786
>emb|AL353804.22| Human DNA sequence from clone RP13-216E22 on chromosome Xq13.1-21.1 Note the TSIX gene (see AmJHumGenet 69, 951) is known to overlap the XIST locus however this transcript has not been submitted to the databases and therefore it is not possible at this stage to annotate the locus, complete sequence Length = 167668 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Plus Query: 174 tttgaaagaaacatgcatttttctt 198 |||||||||||| |||||||||||| Sbjct: 6686 tttgaaagaaacttgcatttttctt 6710
>gb|AC157766.4| Mus musculus chromosome 1, clone RP24-318F24, complete sequence Length = 145303 Score = 42.1 bits (21), Expect = 0.79 Identities = 21/21 (100%) Strand = Plus / Minus Query: 178 aaagaaacatgcatttttctt 198 ||||||||||||||||||||| Sbjct: 28177 aaagaaacatgcatttttctt 28157
>emb|CR931802.8| Zebrafish DNA sequence from clone CH211-223A10 in linkage group 13, complete sequence Length = 136909 Score = 42.1 bits (21), Expect = 0.79 Identities = 21/21 (100%) Strand = Plus / Minus Query: 218 cttgtgatatttacttgttgt 238 ||||||||||||||||||||| Sbjct: 35404 cttgtgatatttacttgttgt 35384
>dbj|AK054860.1| Homo sapiens cDNA FLJ30298 fis, clone BRACE2003172 Length = 2659 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Minus Query: 174 tttgaaagaaacatgcatttttctt 198 |||||||||||| |||||||||||| Sbjct: 37 tttgaaagaaacttgcatttttctt 13
>gb|AC158501.3| Medicago truncatula chromosome 2 BAC clone mth2-70b22, complete sequence Length = 108930 Score = 42.1 bits (21), Expect = 0.79 Identities = 21/21 (100%) Strand = Plus / Minus Query: 136 tattttgggacagagggaata 156 ||||||||||||||||||||| Sbjct: 72635 tattttgggacagagggaata 72615
>ref|NR_001564.1| Homo sapiens X (inactive)-specific transcript (XIST) on chromosome X Length = 19271 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Minus Query: 174 tttgaaagaaacatgcatttttctt 198 |||||||||||| |||||||||||| Sbjct: 16648 tttgaaagaaacttgcatttttctt 16624
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Minus Query: 56 atgctactccctccggtttaaaata 80 ||||||||||||||| ||||||||| Sbjct: 17646445 atgctactccctccgttttaaaata 17646421
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Minus Query: 135 atattttgggacagagggaatatta 159 |||||||||||| |||||||||||| Sbjct: 7245492 atattttgggacggagggaatatta 7245468 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatt 158 ||||||||||||||||||| |||| Sbjct: 29863381 atattttgggacagagggagtatt 29863404 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 catatatgctactccctccg 70 |||||||||||||||||||| Sbjct: 177074 catatatgctactccctccg 177093
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatta 159 ||||||||||||||||||| ||||| Sbjct: 33645015 atattttgggacagagggagtatta 33645039 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 52 atatatgctactccctccggtttaaaat 79 ||||||| ||||||||||| |||||||| Sbjct: 30110370 atatatgttactccctccgttttaaaat 30110397 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatt 158 ||||||||||||||||||| |||| Sbjct: 18259670 atattttgggacagagggagtatt 18259693 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 136 tattttgggacagagggaatatta 159 ||||||||||| |||||||||||| Sbjct: 2033775 tattttgggacggagggaatatta 2033798
>gb|AC009230.3| Homo sapiens BAC clone RP11-343B21 from 2, complete sequence Length = 173993 Score = 42.1 bits (21), Expect = 0.79 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 ttaagcttagtacaattttat 107 ||||||||||||||||||||| Sbjct: 66511 ttaagcttagtacaattttat 66531
>dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0068B06 Length = 143712 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Minus Query: 135 atattttgggacagagggaatatta 159 |||||||||||| |||||||||||| Sbjct: 122903 atattttgggacggagggaatatta 122879
>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13 Length = 150685 Score = 42.1 bits (21), Expect = 0.79 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 attttgggacagagggaatat 157 ||||||||||||||||||||| Sbjct: 36202 attttgggacagagggaatat 36182
>dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0052G07 Length = 156207 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Minus Query: 135 atattttgggacagagggaatatta 159 |||||||||||| |||||||||||| Sbjct: 80496 atattttgggacggagggaatatta 80472
>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1006_A02 Length = 175153 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatta 159 ||||||||||||||||||| ||||| Sbjct: 2424 atattttgggacagagggagtatta 2448
>dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1003_F05 Length = 147472 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatta 159 ||||||||||||||||||| ||||| Sbjct: 57781 atattttgggacagagggagtatta 57805
>dbj|AP005676.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1005_D12 Length = 150588 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatta 159 ||||||||||||||||||| ||||| Sbjct: 39288 atattttgggacagagggagtatta 39312
>dbj|AP004702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0524F03 Length = 167696 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatta 159 ||||||||||| ||||||||||||| Sbjct: 76874 atattttgggaaagagggaatatta 76898
>gb|AC108791.9| Mus musculus chromosome 1, clone RP24-292D18, complete sequence Length = 162007 Score = 42.1 bits (21), Expect = 0.79 Identities = 21/21 (100%) Strand = Plus / Minus Query: 178 aaagaaacatgcatttttctt 198 ||||||||||||||||||||| Sbjct: 88365 aaagaaacatgcatttttctt 88345
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Minus Query: 56 atgctactccctccggtttaaaata 80 ||||||||||||||| ||||||||| Sbjct: 17600816 atgctactccctccgttttaaaata 17600792
>emb|AL731593.2|OSJN00235 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027P08, complete sequence Length = 118959 Score = 42.1 bits (21), Expect = 0.79 Identities = 21/21 (100%) Strand = Plus / Plus Query: 136 tattttgggacagagggaata 156 ||||||||||||||||||||| Sbjct: 70410 tattttgggacagagggaata 70430
>emb|AL935066.2|CNS08CCI Oryza sativa chromosome 12, . BAC OSJNBa0005P03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 162200 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Minus Query: 56 atgctactccctccggtttaaaata 80 ||||||||||||||| ||||||||| Sbjct: 138781 atgctactccctccgttttaaaata 138757
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Minus Query: 173 atttgaaagaaacatgcatttttct 197 |||||||||||| |||||||||||| Sbjct: 58608 atttgaaagaaaaatgcatttttct 58584
>gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0003A09, complete sequence Length = 167222 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 136 tattttgggacagagggaatatta 159 ||||||||||| |||||||||||| Sbjct: 71186 tattttgggacggagggaatatta 71209
>gb|AY425533.1| Isabellaria riedeli tRNA-Met and 12S ribosomal RNA genes, partial sequence; mitochondrial Length = 673 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 aaaataagtggcttaagctt 94 |||||||||||||||||||| Sbjct: 455 aaaataagtggcttaagctt 436
>gb|AY821694.1| Crithopsis delileana beta amylase gene, partial cds; and Stowaway MITE, complete sequence Length = 1521 Score = 40.1 bits (20), Expect = 3.1 Identities = 47/56 (83%) Strand = Plus / Minus Query: 90 agcttagtacaattttatactagaactagtacaaagtcgaaacagatattttggga 145 |||||||||||| ||| ||||| | ||||||||||| || ||| |||||||||| Sbjct: 1267 agcttagtacaactttgtactaaagttagtacaaagttgagacacttattttggga 1212
>gb|AC108762.2| Oryza sativa (japonica cultivar-group) chromosome 9 clone OSJNBb0052C07, complete sequence Length = 154528 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 atattttgggacagagggaatatt 158 ||||||||||||||||||| |||| Sbjct: 15669 atattttgggacagagggagtatt 15646
>gb|AC120307.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0074E19 map R1938, complete sequence Length = 160847 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 tttgggacagagggaatatt 158 |||||||||||||||||||| Sbjct: 10580 tttgggacagagggaatatt 10599
>gb|AC112209.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence Length = 123477 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 gatattttgggacagaggga 153 |||||||||||||||||||| Sbjct: 59338 gatattttgggacagaggga 59357
>gb|AC132486.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0473H02, complete sequence Length = 141027 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 atattttgggacagagggaa 154 |||||||||||||||||||| Sbjct: 63888 atattttgggacagagggaa 63869
>gb|AC137588.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0060K21, complete sequence Length = 153973 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 52 atatatgctactccctccggtttaaaat 79 |||||| |||||||||||| |||||||| Sbjct: 48003 atatatcctactccctccgttttaaaat 47976
>gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete sequence Length = 159579 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatt 158 ||||||||||||||||||| |||| Sbjct: 32560 atattttgggacagagggagtatt 32583
>gb|AC138010.13| Medicago truncatula clone mth2-21i21, complete sequence Length = 109275 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 tactccctccggtttaaaataagt 83 ||||||||||| |||||||||||| Sbjct: 101262 tactccctccgttttaaaataagt 101239
>gb|AC147013.4| Medicago truncatula clone mth2-159f24, complete sequence Length = 118017 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 tactccctccggtttaaaataagt 83 ||||||||||| |||||||||||| Sbjct: 110005 tactccctccgttttaaaataagt 109982
>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0007P22, complete sequence Length = 148068 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 atattttgggacagagggaatatt 158 |||||| ||||||||||||||||| Sbjct: 61198 atatttagggacagagggaatatt 61175
>emb|AL590608.6| Human DNA sequence from clone RP11-363F12 on chromosome 6, complete sequence Length = 200337 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 tctttatttgaaagaaacat 187 |||||||||||||||||||| Sbjct: 75692 tctttatttgaaagaaacat 75673
>emb|AL035662.65|HS599F21 Human DNA sequence from clone RP4-599F21 on chromosome 20q12-13.12 Contains the 5' end of the NCOA5 gene for nuclear receptor coactivator 5, the RPL13P2 gene for ribosomal protein L13 pseudogene 2, the TNFRSF5 gene for tumor necrosis factor receptor superfamily member 5 and two CpG islands, complete sequence Length = 95283 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 tgaaagaaacatgcattttt 195 |||||||||||||||||||| Sbjct: 18707 tgaaagaaacatgcattttt 18688
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 52 atatatgctactccctccggtttaaaat 79 ||||||| ||||||||||| |||||||| Sbjct: 88803 atatatgttactccctccgttttaaaat 88776
>emb|AL606625.3|OSJN00039 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032I19, complete sequence Length = 145383 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 tatgctactccctccggtttaaaa 78 |||||||||||||| ||||||||| Sbjct: 44591 tatgctactccctctggtttaaaa 44568
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 40.1 bits (20), Expect = 3.1 Identities = 44/52 (84%) Strand = Plus / Minus Query: 75 aaaataagtggcttaagcttagtacaattttatactagaactagtacaaagt 126 ||||||| || ||||| |||| ||||| ||||||||||| ||||| ||||| Sbjct: 8345 aaaataaatgtcttaaacttaatacaactttatactagagttagtataaagt 8294
>gb|AC098830.3| Homo sapiens BAC clone RP11-685B15 from 4, complete sequence Length = 38414 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 tttaaaataagtggcttaag 91 |||||||||||||||||||| Sbjct: 26618 tttaaaataagtggcttaag 26637
>gb|AF390900.1|AF390897S4 Mus musculus germ cell nuclear factor (Nr6a1) gene, exons 6 through 12 and complete cds, alternatively transcribed Length = 31288 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tgggacagagggaatattat 160 |||||||||||||||||||| Sbjct: 5144 tgggacagagggaatattat 5125
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatt 158 |||||| ||||||||||||||||| Sbjct: 22391618 atatttagggacagagggaatatt 22391641 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 52 atatatgctactccctccggtttaaaat 79 |||||| |||||||||||| |||||||| Sbjct: 21165844 atatatcctactccctccgttttaaaat 21165817 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 gatattttgggacagaggga 153 |||||||||||||||||||| Sbjct: 2563066 gatattttgggacagaggga 2563047 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 tttgggacagagggaatatt 158 |||||||||||||||||||| Sbjct: 2234581 tttgggacagagggaatatt 2234600
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 atattttgggacagagggaa 154 |||||||||||||||||||| Sbjct: 5741514 atattttgggacagagggaa 5741495
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 atattttgggacagagggaatatt 158 ||||||||||||||||||| |||| Sbjct: 30102466 atattttgggacagagggagtatt 30102443 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 tattttgggacagagggaatatta 159 |||||||||||||||||| ||||| Sbjct: 653450 tattttgggacagagggactatta 653427
>gb|AC154767.2| Mus musculus BAC clone RP23-105P19 from chromosome 13, complete sequence Length = 189362 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 atctttatttgaaagaaaca 186 |||||||||||||||||||| Sbjct: 106792 atctttatttgaaagaaaca 106811
>dbj|AP003229.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0022F10 Length = 150498 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 atattttgggacagagggaatatt 158 ||||||||||||||||||| |||| Sbjct: 7288 atattttgggacagagggagtatt 7265
>dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0690B02 Length = 153116 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 atattttgggacagagggaatatt 158 ||||||||||||||||||| |||| Sbjct: 98456 atattttgggacagagggagtatt 98433
>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0495C02 Length = 151467 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatt 158 |||||||||||| ||||||||||| Sbjct: 26381 atattttgggacggagggaatatt 26404
>dbj|AP004779.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0470A03 Length = 133167 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatt 158 |||||||||||| ||||||||||| Sbjct: 116584 atattttgggacggagggaatatt 116607
>dbj|AP002842.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0075G19 Length = 163558 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 catatatgctactccctccg 70 |||||||||||||||||||| Sbjct: 41970 catatatgctactccctccg 41989
>dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0481E08 Length = 171965 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatt 158 ||||||||||||||||||| |||| Sbjct: 58894 atattttgggacagagggagtatt 58917
>dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0032H19 Length = 126434 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 tattttgggacagagggaatatta 159 |||||||||||||||||| ||||| Sbjct: 37194 tattttgggacagagggactatta 37171
>dbj|AP002882.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439B06 Length = 135991 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 tattttgggacagagggaatatta 159 |||||||||||||||||| ||||| Sbjct: 128055 tattttgggacagagggactatta 128032
>dbj|AP003745.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1123_B01 Length = 105736 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 atattttgggacagagggaatatt 158 ||||||||||||||||| |||||| Sbjct: 66590 atattttgggacagaggaaatatt 66567
>dbj|AP004264.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0025D09 Length = 142593 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 atattttgggacagagggaatatt 158 ||||||||||||||||| |||||| Sbjct: 140015 atattttgggacagaggaaatatt 139992
>dbj|AP004053.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1234_B11 Length = 128095 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 atattttgggacagagggaatatt 158 |||||||||||| ||||||||||| Sbjct: 48050 atattttgggacggagggaatatt 48027
>dbj|AP004381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0025F03 Length = 138042 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatt 158 |||||| ||||||||||||||||| Sbjct: 10447 atatttagggacagagggaatatt 10470
>dbj|AP005542.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0473D02 Length = 146185 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatt 158 |||||| ||||||||||||||||| Sbjct: 81976 atatttagggacagagggaatatt 81999
>dbj|AP004303.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0407H12 Length = 167754 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatt 158 ||||||||||| |||||||||||| Sbjct: 93214 atattttgggatagagggaatatt 93237
>emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete sequence Length = 84361 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 tgctactccctccggtttaaaata 80 |||||||||||||| ||||||||| Sbjct: 69756 tgctactccctccgttttaaaata 69779
>emb|AL732344.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0403D02, complete sequence Length = 138387 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 136 tattttgggacagagggaatatta 159 |||||||||||||||||| ||||| Sbjct: 13267 tattttgggacagagggagtatta 13290
>dbj|AP005621.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0681G01, complete sequence Length = 184118 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 catatatgctactccctccg 70 |||||||||||||||||||| Sbjct: 43468 catatatgctactccctccg 43449
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 atattttgggacagagggaatatt 158 |||||| ||||||||||||||||| Sbjct: 22701529 atatttagggacagagggaatatt 22701552 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 52 atatatgctactccctccggtttaaaat 79 |||||| |||||||||||| |||||||| Sbjct: 21476085 atatatcctactccctccgttttaaaat 21476058 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 gatattttgggacagaggga 153 |||||||||||||||||||| Sbjct: 2572097 gatattttgggacagaggga 2572078 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 tttgggacagagggaatatt 158 |||||||||||||||||||| Sbjct: 2242362 tttgggacagagggaatatt 2242381
>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09, complete sequence Length = 145391 Score = 40.1 bits (20), Expect = 3.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 57 tgctactccctccggtttaaaata 80 |||||||||||||| ||||||||| Sbjct: 23475 tgctactccctccgttttaaaata 23498 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,132,073 Number of Sequences: 3902068 Number of extensions: 3132073 Number of successful extensions: 74181 Number of sequences better than 10.0: 108 Number of HSP's better than 10.0 without gapping: 129 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71381 Number of HSP's gapped (non-prelim): 2798 length of query: 243 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 221 effective length of database: 17,147,199,772 effective search space: 3789531149612 effective search space used: 3789531149612 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
