ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart52a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PAK1_YEAST (P38990) Serine/threonine-protein kinase PAK1 (EC 2.7... 30 2.4
2ARFF_ARATH (Q9ZTX8) Auxin response factor 6 28 5.3

>PAK1_YEAST (P38990) Serine/threonine-protein kinase PAK1 (EC 2.7.11.1)|
          Length = 1142

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 55   QSKSKSSTSNLEDKLEFHGNTDDGK 129
            Q K+ + TSNL D +EF+GN D  K
Sbjct: 1022 QKKATTETSNLTDIVEFNGNNDHRK 1046



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>ARFF_ARATH (Q9ZTX8) Auxin response factor 6|
          Length = 933

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 40  GFRGIQSKSKSSTSNLEDKLEFHGNTDD-GKRGPP 141
           G RG++  + + +SN  DKL  +GN DD G R  P
Sbjct: 883 GKRGLELLNSAPSSNNVDKLPSNGNCDDFGNRSDP 917


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,413,788
Number of Sequences: 219361
Number of extensions: 418442
Number of successful extensions: 1308
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 80,573,946
effective HSP length: 26
effective length of database: 74,870,560
effective search space used: 1796893440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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