ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart52a04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188414.1| Oryza sativa (japonica cultivar-group), Ozsa814... 125 1e-25
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
3dbj|AP002092.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
4dbj|AK066468.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 1e-25
5gb|AY108872.1| Zea mays PCO108167 mRNA sequence 103 4e-19
6dbj|AP003104.2| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
7ref|XM_464813.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.32
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
9dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
10dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
11gb|AC092117.4| Homo sapiens chromosome 16 clone CTD-2270P14, com... 42 1.2
12gb|AC141586.2| Homo sapiens chromosome 16 clone CTD-3126B10, com... 42 1.2
13gb|AC093517.3| Homo sapiens chromosome 16 clone CTD-2593F12, com... 42 1.2
14gb|AC093525.3| Homo sapiens chromosome 16 clone RP11-20I23, comp... 42 1.2
15ref|XM_483110.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.9
16gb|BC081611.1| Danio rerio zgc:92159, mRNA (cDNA clone MGC:92159... 40 4.9
17gb|U41553.1| Caenorhabditis elegans cosmid ZK1193, complete sequ... 40 4.9
18ref|NM_001004590.1| Danio rerio zgc:92159 (zgc:92159), mRNA 40 4.9
19emb|BX248230.21| Zebrafish DNA sequence from clone CH211-213O11 ... 40 4.9
20gb|AY213032.1| Buteo lineatus lineatus mitochondrial NADH dehydr... 40 4.9
21gb|AY213031.1| Buteo lineatus elegans mitochondrial NADH dehydro... 40 4.9
22gb|AY213030.1| Buteo lineatus alleni mitochondrial NADH dehydrog... 40 4.9
23dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
24dbj|AB013392.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 4.9
25dbj|AP004762.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
26gb|AC154822.2| Mus musculus BAC clone RP24-537L18 from 13, compl... 40 4.9
27dbj|AK065316.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.9
28dbj|D83997.1| Capparis masaikai mRNA for mabinlin, complete cds 40 4.9 
>ref|NM_188414.1| Oryza sativa (japonica cultivar-group), Ozsa8140 predicted mRNA
          Length = 2007

 Score =  125 bits (63), Expect = 1e-25
 Identities = 132/155 (85%)
 Strand = Plus / Minus

                                                                        
Query: 216  tatgaccaaccgaagacgaagtcgaggacgtaaacgatggccagggtcagagggtacagc 275
            |||||||| || |||||||||||||||| ||| ||||   | || |  || ||||| |||
Sbjct: 2006 tatgaccagccaaagacgaagtcgaggatgtagacgacaacgagcgaaagcgggtaaagc 1947

                                                                        
Query: 276  aggtacgccaccagacaggtccagagcgggaagctggtccggaagcttgtgaagaggccc 335
            | ||||||||||||||||||||||||||||||  |||| | ||||||||||||||| |||
Sbjct: 1946 atgtacgccaccagacaggtccagagcgggaatgtggttctgaagcttgtgaagagtccc 1887

                                               
Query: 336  atgatgtcacaggcgagcaggatgacgagcacctc 370
            |||||| ||||| ||||||| |||| |||||||||
Sbjct: 1886 atgatgacacagacgagcagtatgatgagcacctc 1852
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  125 bits (63), Expect = 1e-25
 Identities = 132/155 (85%)
 Strand = Plus / Minus

                                                                           
Query: 216     tatgaccaaccgaagacgaagtcgaggacgtaaacgatggccagggtcagagggtacagc 275
               |||||||| || |||||||||||||||| ||| ||||   | || |  || ||||| |||
Sbjct: 6137904 tatgaccagccaaagacgaagtcgaggatgtagacgacaacgagcgaaagcgggtaaagc 6137845

                                                                           
Query: 276     aggtacgccaccagacaggtccagagcgggaagctggtccggaagcttgtgaagaggccc 335
               | ||||||||||||||||||||||||||||||  |||| | ||||||||||||||| |||
Sbjct: 6137844 atgtacgccaccagacaggtccagagcgggaatgtggttctgaagcttgtgaagagtccc 6137785

                                                  
Query: 336     atgatgtcacaggcgagcaggatgacgagcacctc 370
               |||||| ||||| ||||||| |||| |||||||||
Sbjct: 6137784 atgatgacacagacgagcagtatgatgagcacctc 6137750
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>dbj|AP002092.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0031E09
          Length = 176349

 Score =  125 bits (63), Expect = 1e-25
 Identities = 132/155 (85%)
 Strand = Plus / Minus

                                                                          
Query: 216    tatgaccaaccgaagacgaagtcgaggacgtaaacgatggccagggtcagagggtacagc 275
              |||||||| || |||||||||||||||| ||| ||||   | || |  || ||||| |||
Sbjct: 162261 tatgaccagccaaagacgaagtcgaggatgtagacgacaacgagcgaaagcgggtaaagc 162202

                                                                          
Query: 276    aggtacgccaccagacaggtccagagcgggaagctggtccggaagcttgtgaagaggccc 335
              | ||||||||||||||||||||||||||||||  |||| | ||||||||||||||| |||
Sbjct: 162201 atgtacgccaccagacaggtccagagcgggaatgtggttctgaagcttgtgaagagtccc 162142

                                                 
Query: 336    atgatgtcacaggcgagcaggatgacgagcacctc 370
              |||||| ||||| ||||||| |||| |||||||||
Sbjct: 162141 atgatgacacagacgagcagtatgatgagcacctc 162107
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>dbj|AK066468.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013066B01, full
            insert sequence
          Length = 2023

 Score =  125 bits (63), Expect = 1e-25
 Identities = 132/155 (85%)
 Strand = Plus / Minus

                                                                        
Query: 216  tatgaccaaccgaagacgaagtcgaggacgtaaacgatggccagggtcagagggtacagc 275
            |||||||| || |||||||||||||||| ||| ||||   | || |  || ||||| |||
Sbjct: 1791 tatgaccagccaaagacgaagtcgaggatgtagacgacaacgagcgaaagcgggtaaagc 1732

                                                                        
Query: 276  aggtacgccaccagacaggtccagagcgggaagctggtccggaagcttgtgaagaggccc 335
            | ||||||||||||||||||||||||||||||  |||| | ||||||||||||||| |||
Sbjct: 1731 atgtacgccaccagacaggtccagagcgggaatgtggttctgaagcttgtgaagagtccc 1672

                                               
Query: 336  atgatgtcacaggcgagcaggatgacgagcacctc 370
            |||||| ||||| ||||||| |||| |||||||||
Sbjct: 1671 atgatgacacagacgagcagtatgatgagcacctc 1637
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>gb|AY108872.1| Zea mays PCO108167 mRNA sequence
          Length = 805

 Score =  103 bits (52), Expect = 4e-19
 Identities = 133/160 (83%)
 Strand = Plus / Minus

                                                                       
Query: 211 gagcctatgaccaaccgaagacgaagtcgaggacgtaaacgatggccagggtcagagggt 270
           ||||||||||||| || |||||| ||||||||| ||| |||| | |||| |  |  ||||
Sbjct: 565 gagcctatgaccagccaaagacgtagtcgaggatgtagacgaggaccagcgagaacgggt 506

                                                                       
Query: 271 acagcaggtacgccaccagacaggtccagagcgggaagctggtccggaagcttgtgaaga 330
           | |||| ||| || || || |||||||||||||||||  ||||||||||||| |||||||
Sbjct: 505 agagcatgtaggcgacgaggcaggtccagagcgggaacgtggtccggaagctggtgaaga 446

                                                   
Query: 331 ggcccatgatgtcacaggcgagcaggatgacgagcacctc 370
           || |||||| | | ||| |||||||||||| |||||||||
Sbjct: 445 gggccatgacgacgcagacgagcaggatgatgagcacctc 406
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>dbj|AP003104.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           BAC clone:OSJNBa0038J17
          Length = 180186

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 78/92 (84%)
 Strand = Plus / Minus

                                                                       
Query: 216 tatgaccaaccgaagacgaagtcgaggacgtaaacgatggccagggtcagagggtacagc 275
           |||||||| || |||||||||||||||| ||| ||||   | || |  || ||||| |||
Sbjct: 102 tatgaccagccaaagacgaagtcgaggatgtagacgacaacgagcgaaagcgggtaaagc 43

                                           
Query: 276 aggtacgccaccagacaggtccagagcgggaa 307
           | ||||||||||||||||||||||||||||||
Sbjct: 42  atgtacgccaccagacaggtccagagcgggaa 11
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>ref|XM_464813.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1716

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 312  gtccggaagcttgtgaagaggcccat 337
            ||||||||||| ||||||||||||||
Sbjct: 1619 gtccggaagctggtgaagaggcccat 1594
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 312     gtccggaagcttgtgaagaggcccat 337
               ||||||||||| ||||||||||||||
Sbjct: 8361416 gtccggaagctggtgaagaggcccat 8361391
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>dbj|AP005511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0011N12
          Length = 158586

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 312   gtccggaagcttgtgaagaggcccat 337
             ||||||||||| ||||||||||||||
Sbjct: 14266 gtccggaagctggtgaagaggcccat 14241
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>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0090H18
          Length = 174842

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 312    gtccggaagcttgtgaagaggcccat 337
              ||||||||||| ||||||||||||||
Sbjct: 138087 gtccggaagctggtgaagaggcccat 138062
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>gb|AC092117.4| Homo sapiens chromosome 16 clone CTD-2270P14, complete sequence
          Length = 211606

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 41    aagagaagagaacacacacaa 61
             |||||||||||||||||||||
Sbjct: 50497 aagagaagagaacacacacaa 50517
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>gb|AC141586.2| Homo sapiens chromosome 16 clone CTD-3126B10, complete sequence
          Length = 127397

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 41     aagagaagagaacacacacaa 61
              |||||||||||||||||||||
Sbjct: 123783 aagagaagagaacacacacaa 123803



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 41   aagagaagagaacacacacaa 61
            |||||||||||||||||||||
Sbjct: 6289 aagagaagagaacacacacaa 6269
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>gb|AC093517.3| Homo sapiens chromosome 16 clone CTD-2593F12, complete sequence
          Length = 160606

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 41    aagagaagagaacacacacaa 61
             |||||||||||||||||||||
Sbjct: 43917 aagagaagagaacacacacaa 43937
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>gb|AC093525.3| Homo sapiens chromosome 16 clone RP11-20I23, complete sequence
          Length = 157518

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 41    aagagaagagaacacacacaa 61
             |||||||||||||||||||||
Sbjct: 51307 aagagaagagaacacacacaa 51327
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>ref|XM_483110.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 992

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 269 gtacagcaggtacgccacca 288
           ||||||||||||||||||||
Sbjct: 221 gtacagcaggtacgccacca 202
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>gb|BC081611.1| Danio rerio zgc:92159, mRNA (cDNA clone MGC:92159 IMAGE:7049991),
           complete cds
          Length = 1410

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 272 cagcaggtacgccaccagac 291
           ||||||||||||||||||||
Sbjct: 790 cagcaggtacgccaccagac 771
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>gb|U41553.1| Caenorhabditis elegans cosmid ZK1193, complete sequence
          Length = 33075

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 158   aaattacaatgagtcaaaaatcaa 181
             ||||||| ||||||||||||||||
Sbjct: 28693 aaattactatgagtcaaaaatcaa 28716
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>ref|NM_001004590.1| Danio rerio zgc:92159 (zgc:92159), mRNA
          Length = 1410

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 272 cagcaggtacgccaccagac 291
           ||||||||||||||||||||
Sbjct: 790 cagcaggtacgccaccagac 771
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>emb|BX248230.21| Zebrafish DNA sequence from clone CH211-213O11 in linkage group 11,
             complete sequence
          Length = 217432

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 272   cagcaggtacgccaccagac 291
             ||||||||||||||||||||
Sbjct: 12978 cagcaggtacgccaccagac 12997
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>gb|AY213032.1| Buteo lineatus lineatus mitochondrial NADH dehydrogenase subunit 6
           gene, complete cds; tRNA-Glu gene, and pseudo-control
           region, complete sequence
          Length = 881

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 57  cacaaacggtacgcccagac 76
           ||||||||||||||||||||
Sbjct: 367 cacaaacggtacgcccagac 386
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>gb|AY213031.1| Buteo lineatus elegans mitochondrial NADH dehydrogenase subunit 6
           gene, complete cds; tRNA-Glu gene, and pseudo-control
           region, complete sequence
          Length = 881

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 57  cacaaacggtacgcccagac 76
           ||||||||||||||||||||
Sbjct: 367 cacaaacggtacgcccagac 386
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>gb|AY213030.1| Buteo lineatus alleni mitochondrial NADH dehydrogenase subunit 6
           gene, complete cds; tRNA-Glu gene, and pseudo-control
           region, complete sequence
          Length = 881

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 57  cacaaacggtacgcccagac 76
           ||||||||||||||||||||
Sbjct: 367 cacaaacggtacgcccagac 386
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 269      gtacagcaggtacgccacca 288
                ||||||||||||||||||||
Sbjct: 24329567 gtacagcaggtacgccacca 24329586
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>dbj|AB013392.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19
          Length = 84129

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   aacacaacaaacacctcgaa 145
             ||||||||||||||||||||
Sbjct: 58252 aacacaacaaacacctcgaa 58271
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>dbj|AP004762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0686H11
          Length = 135273

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   gtacagcaggtacgccacca 288
             ||||||||||||||||||||
Sbjct: 69871 gtacagcaggtacgccacca 69890
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>gb|AC154822.2| Mus musculus BAC clone RP24-537L18 from 13, complete sequence
          Length = 167628

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   gtcaaaaatcaaactcaagc 189
             ||||||||||||||||||||
Sbjct: 71144 gtcaaaaatcaaactcaagc 71163
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>dbj|AK065316.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002P08, full
           insert sequence
          Length = 992

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 269 gtacagcaggtacgccacca 288
           ||||||||||||||||||||
Sbjct: 221 gtacagcaggtacgccacca 202
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>dbj|D83997.1| Capparis masaikai mRNA for mabinlin, complete cds
          Length = 630

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 227 gaagacgaagtcgaggacgtaaacgatg 254
           |||||||||||||||||||  |||||||
Sbjct: 236 gaagacgaagtcgaggacgacaacgatg 263


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,250,982
Number of Sequences: 3902068
Number of extensions: 3250982
Number of successful extensions: 51994
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51910
Number of HSP's gapped (non-prelim): 83
length of query: 370
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 348
effective length of database: 17,147,199,772
effective search space: 5967225520656
effective search space used: 5967225520656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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