>IME1_YEAST (P21190) Meiosis-inducing protein 1|
          Length = 360

 Score = 34.3 bits (77), Expect = 0.076
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +2

Query: 26  PTFIFTHANKTRSPHFQDNHSTKFASSQQHLCLHEQMIKQIRPKLQIHEEAF-CTHTPSP 202
           P F F      RS HF+   S K ASSQ    +H Q I  I P++  +EE     +  S 
Sbjct: 42  PCFSFGSTISPRSWHFEK--SDKIASSQLQNLVHTQPIHLINPQILFNEEFLNLENIDSQ 99

Query: 203 CSAPNARTTSICSLARSSVR 262
             +   +TT  C++A    R
Sbjct: 100 PISKETKTTKDCTMATGPER 119

>TONB_PSEAE (Q51368) Protein tonB|
          Length = 342

 Score = 32.0 bits (71), Expect = 0.38
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = -2

Query: 285 LVHCAGARRTEDLASEQMLVVRAFGAEHGDGVCVQNASSWIWSFG 151
           +V C+GARR E++A E++L+  A G++  D       S W  S G
Sbjct: 48  VVDCSGARRDEEVAVEEVLIPYAHGSDPEDVPGEPPKSRWWLSSG 92

>PEPF_MYCGE (P47429) Oligoendopeptidase F homolog (EC 3.4.24.-)|
          Length = 607

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +2

Query: 71  FQDNHSTKFASSQQHLCLHEQMIKQ--IRPKLQIHE 172
           F++NH+  F++ QQ L  HE++IK     PKL +++
Sbjct: 92  FKNNHNLAFSTLQQELYNHEKLIKDYLTDPKLAVYK 127

>BIG1_BOVIN (O46382) Brefeldin A-inhibited guanine nucleotide-exchange protein|
           1 (Brefeldin A-inhibited GEP 1) (p200 ARF-GEP1) (p200
           ARF guanine nucleotide exchange factor)
          Length = 1849

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
 Frame = +3

Query: 78  TITQQSLLLLSNIFACTNR*LSRFVQSSKSMKKHFARTHHH--HAPLQMHEQQA-SAR*L 248
           T+TQ    +L+ IFA   R  ++ +Q +K M+K   R HHH   +P+  HE ++   R L
Sbjct: 197 TLTQ----MLNVIFA---RMENQALQEAKQMEKERHRQHHHLLQSPVSHHEPESPQLRYL 249

Query: 249 DPQFAERL 272
            PQ  + +
Sbjct: 250 PPQTVDHI 257

>BIG1_HUMAN (Q9Y6D6) Brefeldin A-inhibited guanine nucleotide-exchange protein|
           1 (Brefeldin A-inhibited GEP 1) (p200 ARF-GEP1) (p200
           ARF guanine nucleotide exchange factor)
          Length = 1849

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
 Frame = +3

Query: 78  TITQQSLLLLSNIFACTNR*LSRFVQSSKSMKKHFARTHHH--HAPLQMHEQQA-SAR*L 248
           T+TQ    +L+ IFA   R  ++ +Q +K M+K   R HHH   +P+  HE ++   R L
Sbjct: 197 TLTQ----MLNVIFA---RMENQALQEAKQMEKERHRQHHHLLPSPVSHHEPESPQLRYL 249

Query: 249 DPQFAERL 272
            PQ  + +
Sbjct: 250 PPQTVDHI 257

>YYAP1_HUMAN (Q9H869) YY1-associated protein 1 (Hepatocellular carcinoma|
           susceptibility protein) (Hepatocellular
           carcinoma-associated protein 2)
          Length = 796

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = +2

Query: 65  PHFQDNHSTKFASSQQHLCLHEQMIKQIRPKLQIHEEAFCTHTPSPCSAPNARTTSIC-- 238
           P  ++ H T      Q   L +QM + ++   QIH  A C    +P   P A +T IC  
Sbjct: 149 PQCKEVHQTLILDPAQRKRLQQQMQQHVQLLTQIHLLATC----NPNLNPEASSTRICLK 204

Query: 239 ---SLARSSV 259
              + A+SS+
Sbjct: 205 ELGTFAQSSI 214

>DCMM_OLICA (P19920) Carbon monoxide dehydrogenase medium chain (EC 1.2.99.2)|
           (CO dehydrogenase subunit M) (CO-DH M)
          Length = 288

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 368 AARVCAPAVADGGGPPRYRSVTAAELLRSSIAQA 267
           A  + APA +DG GP  YR+  A  +LR ++ +A
Sbjct: 250 AEAITAPA-SDGRGPAEYRTKMAGVMLRRAVERA 282

>TREX1_HUMAN (Q9NSU2) Three prime repair exonuclease 1 (EC 3.1.11.2) (3'-5'|
           exonuclease TREX1) (DNase III)
          Length = 369

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 185 THTPSPCSAPNARTTSICSLARSSVRRAPAQ 277
           THTP+PCS+P +   +  ++   ++   P Q
Sbjct: 37  THTPTPCSSPGSAAGTYPTMGSQALPPGPMQ 67

>RLF_HUMAN (Q13129) Zinc finger protein Rlf (Rearranged L-myc fusion gene|
            protein) (Zn-15-related protein)
          Length = 1914

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 84   TQQSLLLLSNIFACTNR*LSRFVQSSKSMKKHFARTH---HHHAPLQMHEQQASAR 242
            T++ L+    IFAC  +  ++    SK++ KH + +H   H   P  + E  ++AR
Sbjct: 1351 TKRELVKCKKIFACKYKECNKRFLCSKALAKHCSDSHNLDHIEEPKVLSEAGSAAR 1406


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,502,538
Number of Sequences: 219361
Number of extensions: 863235
Number of successful extensions: 3098
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3066
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)