Clone Name | rbart51h11 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... | 44 | 0.035 | 2 | dbj|AP003538.2| Oryza sativa (japonica cultivar-group) genomic D... | 44 | 0.035 | 3 | gb|AC101835.7| Mus musculus, clone RP23-227D7, complete sequence | 36 | 8.6 | 4 | gb|AC158917.6| Mus musculus chromosome 5, clone RP24-238D24, com... | 36 | 8.6 |
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.035 Identities = 25/26 (96%) Strand = Plus / Plus Query: 35 aagaaagccccacgtaaaatgtacac 60 |||||||||||||||||||| ||||| Sbjct: 9434203 aagaaagccccacgtaaaatctacac 9434228
>dbj|AP003538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0059O19 Length = 144386 Score = 44.1 bits (22), Expect = 0.035 Identities = 25/26 (96%) Strand = Plus / Plus Query: 35 aagaaagccccacgtaaaatgtacac 60 |||||||||||||||||||| ||||| Sbjct: 21825 aagaaagccccacgtaaaatctacac 21850
>gb|AC101835.7| Mus musculus, clone RP23-227D7, complete sequence Length = 208667 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Plus Query: 1 ttacacaggttttaatca 18 |||||||||||||||||| Sbjct: 174324 ttacacaggttttaatca 174341
>gb|AC158917.6| Mus musculus chromosome 5, clone RP24-238D24, complete sequence Length = 184805 Score = 36.2 bits (18), Expect = 8.6 Identities = 18/18 (100%) Strand = Plus / Minus Query: 1 ttacacaggttttaatca 18 |||||||||||||||||| Sbjct: 110649 ttacacaggttttaatca 110632 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 252,051 Number of Sequences: 3902068 Number of extensions: 252051 Number of successful extensions: 11193 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 11187 Number of HSP's gapped (non-prelim): 6 length of query: 60 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 39 effective length of database: 17,151,101,840 effective search space: 668892971760 effective search space used: 668892971760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)