ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart51h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.035
2dbj|AP003538.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.035
3gb|AC101835.7| Mus musculus, clone RP23-227D7, complete sequence 36 8.6
4gb|AC158917.6| Mus musculus chromosome 5, clone RP24-238D24, com... 36 8.6

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.035
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 35      aagaaagccccacgtaaaatgtacac 60
               |||||||||||||||||||| |||||
Sbjct: 9434203 aagaaagccccacgtaaaatctacac 9434228



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>dbj|AP003538.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0059O19
          Length = 144386

 Score = 44.1 bits (22), Expect = 0.035
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 35    aagaaagccccacgtaaaatgtacac 60
             |||||||||||||||||||| |||||
Sbjct: 21825 aagaaagccccacgtaaaatctacac 21850



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>gb|AC101835.7| Mus musculus, clone RP23-227D7, complete sequence
          Length = 208667

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 1      ttacacaggttttaatca 18
              ||||||||||||||||||
Sbjct: 174324 ttacacaggttttaatca 174341



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>gb|AC158917.6| Mus musculus chromosome 5, clone RP24-238D24, complete sequence
          Length = 184805

 Score = 36.2 bits (18), Expect = 8.6
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 1      ttacacaggttttaatca 18
              ||||||||||||||||||
Sbjct: 110649 ttacacaggttttaatca 110632


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 252,051
Number of Sequences: 3902068
Number of extensions: 252051
Number of successful extensions: 11193
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11187
Number of HSP's gapped (non-prelim): 6
length of query: 60
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 39
effective length of database: 17,151,101,840
effective search space: 668892971760
effective search space used: 668892971760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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