ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart51h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100 30 3.1
2WIF1_DROME (Q9W3W5) Protein shifted precursor (WIF-1-like protein) 29 4.0
35HTR_BOMMO (Q17239) 5-hydroxytryptamine receptor (5-HT receptor)... 28 6.9
4DRD2A_XENLA (P24628) D(2) dopamine receptor A (D2R-A) (D2R 1) 28 9.0
5VHR1_COWPX (P12932) Host range protein 1 28 9.0

>SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100|
          Length = 1038

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
 Frame = +1

Query: 55  LNQHTRTLKSCTSAAIYTRQMTPYIHMPVAGSWSRIKWDKMNDAIP------NYIYKC-- 210
           +N H+R L+  TSA   ++ +    H+P+      +      + +P        I +C  
Sbjct: 314 MNCHSRYLRLTTSAIPNSQSLASRWHLPLGAVVCPLAETPEGEEVPLIDFGSTGIIRCRR 373

Query: 211 CRRLVNKNECVFYDAQRSWSCSALALL 291
           CR  VN     F D+ R W C+  ++L
Sbjct: 374 CRTYVNP-FVTFTDSGRKWRCNICSML 399



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>WIF1_DROME (Q9W3W5) Protein shifted precursor (WIF-1-like protein)|
          Length = 456

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 352 KQHRTWVCPSGGFKANFTHCKARPMLNKTSCAARRRRHIH 233
           KQ     C +G   ++  HCK  P      C  R+RRH+H
Sbjct: 411 KQRSICKCRNGTCVSH-KHCKCHPGFYGRHCNGRKRRHVH 449



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>5HTR_BOMMO (Q17239) 5-hydroxytryptamine receptor (5-HT receptor) (Serotonin|
           receptor)
          Length = 446

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 145 LLLACVYMVSFAVYI*LQMCSSSVCVCVDLDWNRIAPCEFRCI 17
           +++ACV+ VSF V      C + +    D DWN+    + RC+
Sbjct: 179 MMIACVWTVSFFV------CIAQLLGWKDPDWNQRVSEDLRCV 215



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>DRD2A_XENLA (P24628) D(2) dopamine receptor A (D2R-A) (D2R 1)|
          Length = 442

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 6   KKVYIHLNSQGAILFQSKSTHTHTEELHICSYIYTANDTIYTHASSRVVVQ 158
           K+V    NS+G  +   K   TH E++ +CS    +N +        ++VQ
Sbjct: 215 KRVNTKRNSRGVAVDAHKDKCTHPEDVKLCSVFVKSNGSFPADKKKVILVQ 265



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>VHR1_COWPX (P12932) Host range protein 1|
          Length = 669

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 93  CSYIYTANDTIYTHASSRVVVQNQVGQNERCNTKLYLQMLS 215
           CS IY   D  Y +A      QN   Q   C T L+L ++S
Sbjct: 162 CSVIYEDEDDEYGYAYEEYHSQNDDYQPRNCGTVLHLYIIS 202


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,081,763
Number of Sequences: 219361
Number of extensions: 1105249
Number of successful extensions: 2630
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2630
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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