ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart51h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK106409.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 5e-06
2gb|AC174930.1| Oryza sativa (japonica cultivar-group) BAC clone ... 60 5e-06
3gb|AY921641.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR4... 56 8e-05
4gb|AY921645.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR8... 50 0.005
5gb|AY108381.1| Zea mays PCO088244 mRNA sequence 50 0.005
6dbj|AB030705.1| Lithospermum erythrorhizon mRNA for LEDI-5a prot... 48 0.019
7gb|AY921644.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR7... 42 1.2
8gb|AC117527.2| Homo sapiens chromosome 5 clone RP11-1A7, complet... 42 1.2
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
10gb|AC012315.5|AC012315 Homo sapiens chromosome 5 clone CTD-2122K... 42 1.2
11dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
12dbj|AP002914.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
13dbj|AK121554.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
14dbj|AK100034.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
15gb|AY106967.1| Zea mays PCO088243 mRNA sequence 42 1.2
16emb|AL732495.11| Mouse DNA sequence from clone RP23-76E19 on chr... 42 1.2
17gb|AC165090.3| Mus musculus BAC clone RP23-95H4 from chromosome ... 40 4.7
18gb|AY693226.1| Saccharomyces cerevisiae clone FLH112938.01X YPL1... 40 4.7
19emb|AL589787.16| Human DNA sequence from clone RP11-422P15 on ch... 40 4.7
20emb|AL160057.11| Human DNA sequence from clone RP11-25C18 on chr... 40 4.7
21emb|Z73527.1|SCYPL171C S.cerevisiae chromosome XVI reading frame... 40 4.7
22gb|AC024561.5| Homo sapiens chromosome 5 clone CTB-94B10, comple... 40 4.7
23gb|AC154263.2| Mus musculus BAC clone RP24-308C1 from chromosome... 40 4.7
24gb|AC158390.2| Mus musculus BAC clone RP24-401O3 from chromosome... 40 4.7
25dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
26dbj|AP006061.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
27dbj|AP005909.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
28gb|AC124474.4| Mus musculus BAC clone RP24-88C10 from 1, complet... 40 4.7
29gb|AC131680.4| Mus musculus BAC clone RP23-346F8 from 8, complet... 40 4.7
30emb|CT025159.8| Mouse DNA sequence from clone RP23-336K1 on chro... 40 4.7
31gb|L29279.1|YSCCOX1A Saccharomyces cerevisiae old yellow enzyme,... 40 4.7

>dbj|AK106409.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-H07, full
            insert sequence
          Length = 1360

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 123  tcgagggatgggtagtcggtgtagccaacgacggggtcgggggtgtagaa 172
            |||||| | |||||||||||||||||  |||||||||||| |||||||||
Sbjct: 1156 tcgaggaacgggtagtcggtgtagccggcgacggggtcggcggtgtagaa 1107



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>gb|AC174930.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBa0043H01, from
             chromosome 4, complete sequence
          Length = 15426

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                               
Query: 123   tcgagggatgggtagtcggtgtagccaacgacggggtcgggggtgtagaa 172
             |||||| | |||||||||||||||||  |||||||||||| |||||||||
Sbjct: 12773 tcgaggaacgggtagtcggtgtagccggcgacggggtcggcggtgtagaa 12822



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>gb|AY921641.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR4) mRNA, complete cds
          Length = 1833

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 132  gggtagtcggtgtagccaacgacggggtcgggggtgtagaaggt 175
            |||||||| ||||| |||| ||||||||||| ||||||||||||
Sbjct: 1742 gggtagtctgtgtatccaatgacggggtcggaggtgtagaaggt 1699



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>gb|AY921645.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR8) mRNA, complete cds
          Length = 1529

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 132  gggtagtcggtgtagccaacgacggggtcgggggtgtagaa 172
            |||||||| ||||| ||||||||||| || |||||||||||
Sbjct: 1266 gggtagtccgtgtaaccaacgacgggatccggggtgtagaa 1226



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>gb|AY108381.1| Zea mays PCO088244 mRNA sequence
          Length = 694

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 132 gggtagtcggtgtagccaacgacggggtcgggggtgtagaa 172
           |||||||| ||||| ||||||||||| || |||||||||||
Sbjct: 431 gggtagtccgtgtaaccaacgacgggatccggggtgtagaa 391



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>dbj|AB030705.1| Lithospermum erythrorhizon mRNA for LEDI-5a protein, complete cds
          Length = 1454

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 130  atgggtagtcggtgtagccaacgacggggtcg 161
            ||||||||||||||||||| || |||||||||
Sbjct: 1134 atgggtagtcggtgtagccgacaacggggtcg 1103



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>gb|AY921644.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR7) mRNA, complete cds
          Length = 1594

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 124  cgagggatgggtagtcggtgtagccaacgacggggtcgggggtgtagaa 172
            ||||| ||| |||||| ||||| || ||||||||||| || ||||||||
Sbjct: 1410 cgaggaatgtgtagtccgtgtaaccgacgacggggtccggcgtgtagaa 1362



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>gb|AC117527.2| Homo sapiens chromosome 5 clone RP11-1A7, complete sequence
          Length = 167042

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 180   ctgtcatacttgttcagctcc 200
             |||||||||||||||||||||
Sbjct: 96654 ctgtcatacttgttcagctcc 96674



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                         
Query: 132      gggtagtcggtgtagccaacgacggggtcgggggtgtagaaggtcatcctgtcatac 188
                |||||||| |||||||| || || || || || |||||||||||  |||||||||||
Sbjct: 15175084 gggtagtccgtgtagcccaccacaggatcaggcgtgtagaaggtgctcctgtcatac 15175140



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                            
Query: 132      gggtagtcggtgtagccaacgacggggtcgggggtgtagaaggtcatcctgtcatacttg 191
                |||||||| |||||||| || || || || | ||| ||||| ||  ||||||||||||||
Sbjct: 15167321 gggtagtccgtgtagcccaccacaggatcagaggtatagaacgtgctcctgtcatacttg 15167380

                     
Query: 192      ttcag 196
                |||||
Sbjct: 15167381 ttcag 15167385



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>gb|AC012315.5|AC012315 Homo sapiens chromosome 5 clone CTD-2122K7, complete sequence
          Length = 170216

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 180   ctgtcatacttgttcagctcc 200
             |||||||||||||||||||||
Sbjct: 58163 ctgtcatacttgttcagctcc 58183



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>dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0043B10
          Length = 167399

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                       
Query: 132    gggtagtcggtgtagccaacgacggggtcgggggtgtagaaggtcatcctgtcatac 188
              |||||||| |||||||| || || || || || |||||||||||  |||||||||||
Sbjct: 147050 gggtagtccgtgtagcccaccacaggatcaggcgtgtagaaggtgctcctgtcatac 147106



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                          
Query: 132    gggtagtcggtgtagccaacgacggggtcgggggtgtagaaggtcatcctgtcatacttg 191
              |||||||| |||||||| || || || || | ||| ||||| ||  ||||||||||||||
Sbjct: 139287 gggtagtccgtgtagcccaccacaggatcagaggtatagaacgtgctcctgtcatacttg 139346

                   
Query: 192    ttcag 196
              |||||
Sbjct: 139347 ttcag 139351



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>dbj|AP002914.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0493G01
          Length = 167587

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                      
Query: 132   gggtagtcggtgtagccaacgacggggtcgggggtgtagaaggtcatcctgtcatac 188
             |||||||| |||||||| || || || || || |||||||||||  |||||||||||
Sbjct: 28457 gggtagtccgtgtagcccaccacaggatcaggcgtgtagaaggtgctcctgtcatac 28513



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                         
Query: 132   gggtagtcggtgtagccaacgacggggtcgggggtgtagaaggtcatcctgtcatacttg 191
             |||||||| |||||||| || || || || | ||| ||||| ||  ||||||||||||||
Sbjct: 20694 gggtagtccgtgtagcccaccacaggatcagaggtatagaacgtgctcctgtcatacttg 20753

                  
Query: 192   ttcag 196
             |||||
Sbjct: 20754 ttcag 20758



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>dbj|AK121554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033G12, full
            insert sequence
          Length = 1613

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                     
Query: 132  gggtagtcggtgtagccaacgacggggtcgggggtgtagaaggtcatcctgtcatac 188
            |||||||| |||||||| || || || || || |||||||||||  |||||||||||
Sbjct: 1368 gggtagtccgtgtagcccaccacaggatcaggcgtgtagaaggtgctcctgtcatac 1312



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>dbj|AK100034.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149N02, full
            insert sequence
          Length = 2710

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 132  gggtagtcggtgtagccaacgacggggtcgggggtgtagaaggtcatcctgtcatacttg 191
            |||||||| |||||||| || || || || | ||| ||||| ||  ||||||||||||||
Sbjct: 2536 gggtagtccgtgtagcccaccacaggatcagaggtatagaacgtgctcctgtcatacttg 2477

                 
Query: 192  ttcag 196
            |||||
Sbjct: 2476 ttcag 2472



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>gb|AY106967.1| Zea mays PCO088243 mRNA sequence
          Length = 765

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 124 cgagggatgggtagtcggtgtagccaacgacggggtcgggggtgtagaa 172
           ||||| ||| |||||| ||||| || ||||||||||| || ||||||||
Sbjct: 581 cgaggaatgtgtagtccgtgtaaccgacgacggggtccggcgtgtagaa 533



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>emb|AL732495.11| Mouse DNA sequence from clone RP23-76E19 on chromosome 2, complete
             sequence
          Length = 164199

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 180   ctgtcatacttgttcagctcc 200
             |||||||||||||||||||||
Sbjct: 29592 ctgtcatacttgttcagctcc 29572



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>gb|AC165090.3| Mus musculus BAC clone RP23-95H4 from chromosome 8, complete sequence
          Length = 252334

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 47     cacacatacatttaattgta 66
              ||||||||||||||||||||
Sbjct: 214778 cacacatacatttaattgta 214797



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>gb|AY693226.1| Saccharomyces cerevisiae clone FLH112938.01X YPL171C gene, complete
            cds
          Length = 1203

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 164  ggtgtagaaggtcatcctgtcatacttgttca 195
            ||||||||||||  | ||||||||||||||||
Sbjct: 1131 ggtgtagaaggtacttctgtcatacttgttca 1100



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>emb|AL589787.16| Human DNA sequence from clone RP11-422P15 on chromosome 10 Contans the
             5' end of the ADAM12 gene for a disintegrin and
             metalloproteinase domain 12 (meltrin alpha) (MCMP, MLTN,
             MLTNA, MCMPMltna), a novel gene, the 3' end of a novel
             gene and a CpG island, complete sequence
          Length = 146287

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 284   gaccaccttgcccccttcct 303
             ||||||||||||||||||||
Sbjct: 72421 gaccaccttgcccccttcct 72440



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>emb|AL160057.11| Human DNA sequence from clone RP11-25C18 on chromosome 1q31.1-31.3,
             complete sequence
          Length = 107328

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     atcatcatacaaagtttatt 25
             ||||||||||||||||||||
Sbjct: 47229 atcatcatacaaagtttatt 47248



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>emb|Z73527.1|SCYPL171C S.cerevisiae chromosome XVI reading frame ORF YPL171c
          Length = 2572

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 164 ggtgtagaaggtcatcctgtcatacttgttca 195
           ||||||||||||  | ||||||||||||||||
Sbjct: 500 ggtgtagaaggtacttctgtcatacttgttca 531



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>gb|AC024561.5| Homo sapiens chromosome 5 clone CTB-94B10, complete sequence
          Length = 155125

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 335    ccctttgaatgcctccctat 354
              ||||||||||||||||||||
Sbjct: 102504 ccctttgaatgcctccctat 102523



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>gb|AC154263.2| Mus musculus BAC clone RP24-308C1 from chromosome 14, complete sequence
          Length = 196901

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   tgtcatacttgttcagctcc 200
             ||||||||||||||||||||
Sbjct: 28908 tgtcatacttgttcagctcc 28927



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>gb|AC158390.2| Mus musculus BAC clone RP24-401O3 from chromosome 14, complete sequence
          Length = 121889

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    tgtcatacttgttcagctcc 200
              ||||||||||||||||||||
Sbjct: 116642 tgtcatacttgttcagctcc 116661



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
              complete sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     aattgcatcatccaagaaag 103
              ||||||||||||||||||||
Sbjct: 415424 aattgcatcatccaagaaag 415405



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>dbj|AP006061.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0414D03
          Length = 169823

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     aattgcatcatccaagaaag 103
              ||||||||||||||||||||
Sbjct: 164023 aattgcatcatccaagaaag 164004



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>dbj|AP005909.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0006G10
          Length = 156293

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    aattgcatcatccaagaaag 103
             ||||||||||||||||||||
Sbjct: 39784 aattgcatcatccaagaaag 39765



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>gb|AC124474.4| Mus musculus BAC clone RP24-88C10 from 1, complete sequence
          Length = 225413

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                          
Query: 34     taagcacatcattcacacatacatttaa 61
              ||||||||| ||||||||||||||||||
Sbjct: 153820 taagcacat-attcacacatacatttaa 153846



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>gb|AC131680.4| Mus musculus BAC clone RP23-346F8 from 8, complete sequence
          Length = 198162

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     cacacatacatttaattgta 66
              ||||||||||||||||||||
Sbjct: 102296 cacacatacatttaattgta 102277



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>emb|CT025159.8| Mouse DNA sequence from clone RP23-336K1 on chromosome 14, complete
             sequence
          Length = 198530

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   tgtcatacttgttcagctcc 200
             ||||||||||||||||||||
Sbjct: 17393 tgtcatacttgttcagctcc 17374



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>gb|L29279.1|YSCCOX1A Saccharomyces cerevisiae old yellow enzyme, NAD(P)H dehydrogenase
            (OYE3) gene, complete cds, and cytochrome oxidase (COX10)
            gene, partial cds
          Length = 1779

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 164  ggtgtagaaggtcatcctgtcatacttgttca 195
            ||||||||||||  | ||||||||||||||||
Sbjct: 1190 ggtgtagaaggtacttctgtcatacttgttca 1159


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,561,699
Number of Sequences: 3902068
Number of extensions: 2561699
Number of successful extensions: 45338
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 45270
Number of HSP's gapped (non-prelim): 69
length of query: 355
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 333
effective length of database: 17,147,199,772
effective search space: 5710017524076
effective search space used: 5710017524076
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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