Clone Name | rbart51h01 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK106409.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-H07, full insert sequence Length = 1360 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 123 tcgagggatgggtagtcggtgtagccaacgacggggtcgggggtgtagaa 172 |||||| | ||||||||||||||||| |||||||||||| ||||||||| Sbjct: 1156 tcgaggaacgggtagtcggtgtagccggcgacggggtcggcggtgtagaa 1107
>gb|AC174930.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBa0043H01, from chromosome 4, complete sequence Length = 15426 Score = 60.0 bits (30), Expect = 5e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 123 tcgagggatgggtagtcggtgtagccaacgacggggtcgggggtgtagaa 172 |||||| | ||||||||||||||||| |||||||||||| ||||||||| Sbjct: 12773 tcgaggaacgggtagtcggtgtagccggcgacggggtcggcggtgtagaa 12822
>gb|AY921641.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR4) mRNA, complete cds Length = 1833 Score = 56.0 bits (28), Expect = 8e-05 Identities = 40/44 (90%) Strand = Plus / Minus Query: 132 gggtagtcggtgtagccaacgacggggtcgggggtgtagaaggt 175 |||||||| ||||| |||| ||||||||||| |||||||||||| Sbjct: 1742 gggtagtctgtgtatccaatgacggggtcggaggtgtagaaggt 1699
>gb|AY921645.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR8) mRNA, complete cds Length = 1529 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Minus Query: 132 gggtagtcggtgtagccaacgacggggtcgggggtgtagaa 172 |||||||| ||||| ||||||||||| || ||||||||||| Sbjct: 1266 gggtagtccgtgtaaccaacgacgggatccggggtgtagaa 1226
>gb|AY108381.1| Zea mays PCO088244 mRNA sequence Length = 694 Score = 50.1 bits (25), Expect = 0.005 Identities = 37/41 (90%) Strand = Plus / Minus Query: 132 gggtagtcggtgtagccaacgacggggtcgggggtgtagaa 172 |||||||| ||||| ||||||||||| || ||||||||||| Sbjct: 431 gggtagtccgtgtaaccaacgacgggatccggggtgtagaa 391
>dbj|AB030705.1| Lithospermum erythrorhizon mRNA for LEDI-5a protein, complete cds Length = 1454 Score = 48.1 bits (24), Expect = 0.019 Identities = 30/32 (93%) Strand = Plus / Minus Query: 130 atgggtagtcggtgtagccaacgacggggtcg 161 ||||||||||||||||||| || ||||||||| Sbjct: 1134 atgggtagtcggtgtagccgacaacggggtcg 1103
>gb|AY921644.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR7) mRNA, complete cds Length = 1594 Score = 42.1 bits (21), Expect = 1.2 Identities = 42/49 (85%) Strand = Plus / Minus Query: 124 cgagggatgggtagtcggtgtagccaacgacggggtcgggggtgtagaa 172 ||||| ||| |||||| ||||| || ||||||||||| || |||||||| Sbjct: 1410 cgaggaatgtgtagtccgtgtaaccgacgacggggtccggcgtgtagaa 1362
>gb|AC117527.2| Homo sapiens chromosome 5 clone RP11-1A7, complete sequence Length = 167042 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 ctgtcatacttgttcagctcc 200 ||||||||||||||||||||| Sbjct: 96654 ctgtcatacttgttcagctcc 96674
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.2 Identities = 48/57 (84%) Strand = Plus / Plus Query: 132 gggtagtcggtgtagccaacgacggggtcgggggtgtagaaggtcatcctgtcatac 188 |||||||| |||||||| || || || || || ||||||||||| ||||||||||| Sbjct: 15175084 gggtagtccgtgtagcccaccacaggatcaggcgtgtagaaggtgctcctgtcatac 15175140 Score = 42.1 bits (21), Expect = 1.2 Identities = 54/65 (83%) Strand = Plus / Plus Query: 132 gggtagtcggtgtagccaacgacggggtcgggggtgtagaaggtcatcctgtcatacttg 191 |||||||| |||||||| || || || || | ||| ||||| || |||||||||||||| Sbjct: 15167321 gggtagtccgtgtagcccaccacaggatcagaggtatagaacgtgctcctgtcatacttg 15167380 Query: 192 ttcag 196 ||||| Sbjct: 15167381 ttcag 15167385
>gb|AC012315.5|AC012315 Homo sapiens chromosome 5 clone CTD-2122K7, complete sequence Length = 170216 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 ctgtcatacttgttcagctcc 200 ||||||||||||||||||||| Sbjct: 58163 ctgtcatacttgttcagctcc 58183
>dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0043B10 Length = 167399 Score = 42.1 bits (21), Expect = 1.2 Identities = 48/57 (84%) Strand = Plus / Plus Query: 132 gggtagtcggtgtagccaacgacggggtcgggggtgtagaaggtcatcctgtcatac 188 |||||||| |||||||| || || || || || ||||||||||| ||||||||||| Sbjct: 147050 gggtagtccgtgtagcccaccacaggatcaggcgtgtagaaggtgctcctgtcatac 147106 Score = 42.1 bits (21), Expect = 1.2 Identities = 54/65 (83%) Strand = Plus / Plus Query: 132 gggtagtcggtgtagccaacgacggggtcgggggtgtagaaggtcatcctgtcatacttg 191 |||||||| |||||||| || || || || | ||| ||||| || |||||||||||||| Sbjct: 139287 gggtagtccgtgtagcccaccacaggatcagaggtatagaacgtgctcctgtcatacttg 139346 Query: 192 ttcag 196 ||||| Sbjct: 139347 ttcag 139351
>dbj|AP002914.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0493G01 Length = 167587 Score = 42.1 bits (21), Expect = 1.2 Identities = 48/57 (84%) Strand = Plus / Plus Query: 132 gggtagtcggtgtagccaacgacggggtcgggggtgtagaaggtcatcctgtcatac 188 |||||||| |||||||| || || || || || ||||||||||| ||||||||||| Sbjct: 28457 gggtagtccgtgtagcccaccacaggatcaggcgtgtagaaggtgctcctgtcatac 28513 Score = 42.1 bits (21), Expect = 1.2 Identities = 54/65 (83%) Strand = Plus / Plus Query: 132 gggtagtcggtgtagccaacgacggggtcgggggtgtagaaggtcatcctgtcatacttg 191 |||||||| |||||||| || || || || | ||| ||||| || |||||||||||||| Sbjct: 20694 gggtagtccgtgtagcccaccacaggatcagaggtatagaacgtgctcctgtcatacttg 20753 Query: 192 ttcag 196 ||||| Sbjct: 20754 ttcag 20758
>dbj|AK121554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033G12, full insert sequence Length = 1613 Score = 42.1 bits (21), Expect = 1.2 Identities = 48/57 (84%) Strand = Plus / Minus Query: 132 gggtagtcggtgtagccaacgacggggtcgggggtgtagaaggtcatcctgtcatac 188 |||||||| |||||||| || || || || || ||||||||||| ||||||||||| Sbjct: 1368 gggtagtccgtgtagcccaccacaggatcaggcgtgtagaaggtgctcctgtcatac 1312
>dbj|AK100034.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149N02, full insert sequence Length = 2710 Score = 42.1 bits (21), Expect = 1.2 Identities = 54/65 (83%) Strand = Plus / Minus Query: 132 gggtagtcggtgtagccaacgacggggtcgggggtgtagaaggtcatcctgtcatacttg 191 |||||||| |||||||| || || || || | ||| ||||| || |||||||||||||| Sbjct: 2536 gggtagtccgtgtagcccaccacaggatcagaggtatagaacgtgctcctgtcatacttg 2477 Query: 192 ttcag 196 ||||| Sbjct: 2476 ttcag 2472
>gb|AY106967.1| Zea mays PCO088243 mRNA sequence Length = 765 Score = 42.1 bits (21), Expect = 1.2 Identities = 42/49 (85%) Strand = Plus / Minus Query: 124 cgagggatgggtagtcggtgtagccaacgacggggtcgggggtgtagaa 172 ||||| ||| |||||| ||||| || ||||||||||| || |||||||| Sbjct: 581 cgaggaatgtgtagtccgtgtaaccgacgacggggtccggcgtgtagaa 533
>emb|AL732495.11| Mouse DNA sequence from clone RP23-76E19 on chromosome 2, complete sequence Length = 164199 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 180 ctgtcatacttgttcagctcc 200 ||||||||||||||||||||| Sbjct: 29592 ctgtcatacttgttcagctcc 29572
>gb|AC165090.3| Mus musculus BAC clone RP23-95H4 from chromosome 8, complete sequence Length = 252334 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 cacacatacatttaattgta 66 |||||||||||||||||||| Sbjct: 214778 cacacatacatttaattgta 214797
>gb|AY693226.1| Saccharomyces cerevisiae clone FLH112938.01X YPL171C gene, complete cds Length = 1203 Score = 40.1 bits (20), Expect = 4.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 164 ggtgtagaaggtcatcctgtcatacttgttca 195 |||||||||||| | |||||||||||||||| Sbjct: 1131 ggtgtagaaggtacttctgtcatacttgttca 1100
>emb|AL589787.16| Human DNA sequence from clone RP11-422P15 on chromosome 10 Contans the 5' end of the ADAM12 gene for a disintegrin and metalloproteinase domain 12 (meltrin alpha) (MCMP, MLTN, MLTNA, MCMPMltna), a novel gene, the 3' end of a novel gene and a CpG island, complete sequence Length = 146287 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 gaccaccttgcccccttcct 303 |||||||||||||||||||| Sbjct: 72421 gaccaccttgcccccttcct 72440
>emb|AL160057.11| Human DNA sequence from clone RP11-25C18 on chromosome 1q31.1-31.3, complete sequence Length = 107328 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 atcatcatacaaagtttatt 25 |||||||||||||||||||| Sbjct: 47229 atcatcatacaaagtttatt 47248
>emb|Z73527.1|SCYPL171C S.cerevisiae chromosome XVI reading frame ORF YPL171c Length = 2572 Score = 40.1 bits (20), Expect = 4.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 164 ggtgtagaaggtcatcctgtcatacttgttca 195 |||||||||||| | |||||||||||||||| Sbjct: 500 ggtgtagaaggtacttctgtcatacttgttca 531
>gb|AC024561.5| Homo sapiens chromosome 5 clone CTB-94B10, complete sequence Length = 155125 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 ccctttgaatgcctccctat 354 |||||||||||||||||||| Sbjct: 102504 ccctttgaatgcctccctat 102523
>gb|AC154263.2| Mus musculus BAC clone RP24-308C1 from chromosome 14, complete sequence Length = 196901 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 tgtcatacttgttcagctcc 200 |||||||||||||||||||| Sbjct: 28908 tgtcatacttgttcagctcc 28927
>gb|AC158390.2| Mus musculus BAC clone RP24-401O3 from chromosome 14, complete sequence Length = 121889 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 tgtcatacttgttcagctcc 200 |||||||||||||||||||| Sbjct: 116642 tgtcatacttgttcagctcc 116661
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aattgcatcatccaagaaag 103 |||||||||||||||||||| Sbjct: 415424 aattgcatcatccaagaaag 415405
>dbj|AP006061.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0414D03 Length = 169823 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aattgcatcatccaagaaag 103 |||||||||||||||||||| Sbjct: 164023 aattgcatcatccaagaaag 164004
>dbj|AP005909.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0006G10 Length = 156293 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aattgcatcatccaagaaag 103 |||||||||||||||||||| Sbjct: 39784 aattgcatcatccaagaaag 39765
>gb|AC124474.4| Mus musculus BAC clone RP24-88C10 from 1, complete sequence Length = 225413 Score = 40.1 bits (20), Expect = 4.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 34 taagcacatcattcacacatacatttaa 61 ||||||||| |||||||||||||||||| Sbjct: 153820 taagcacat-attcacacatacatttaa 153846
>gb|AC131680.4| Mus musculus BAC clone RP23-346F8 from 8, complete sequence Length = 198162 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 cacacatacatttaattgta 66 |||||||||||||||||||| Sbjct: 102296 cacacatacatttaattgta 102277
>emb|CT025159.8| Mouse DNA sequence from clone RP23-336K1 on chromosome 14, complete sequence Length = 198530 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 tgtcatacttgttcagctcc 200 |||||||||||||||||||| Sbjct: 17393 tgtcatacttgttcagctcc 17374
>gb|L29279.1|YSCCOX1A Saccharomyces cerevisiae old yellow enzyme, NAD(P)H dehydrogenase (OYE3) gene, complete cds, and cytochrome oxidase (COX10) gene, partial cds Length = 1779 Score = 40.1 bits (20), Expect = 4.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 164 ggtgtagaaggtcatcctgtcatacttgttca 195 |||||||||||| | |||||||||||||||| Sbjct: 1190 ggtgtagaaggtacttctgtcatacttgttca 1159 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,561,699 Number of Sequences: 3902068 Number of extensions: 2561699 Number of successful extensions: 45338 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 45270 Number of HSP's gapped (non-prelim): 69 length of query: 355 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 333 effective length of database: 17,147,199,772 effective search space: 5710017524076 effective search space used: 5710017524076 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)