Clone Name | rbart51g06 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related peroxidase Length = 1245 Score = 301 bits (152), Expect = 3e-79 Identities = 158/160 (98%) Strand = Plus / Minus Query: 5 tgacctcttatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 64 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1245 tgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 1186 Query: 65 gactacttaacggccactcacacagtcacacagtactactacgttacaccgattgggtat 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1185 gactacttaacggccactcacacagtcacacagtactactacgttacaccgattggttat 1126 Query: 125 atatctctcacatgtcagcggcgatcccctcgtcgccggc 164 |||||||||||||||||||||||||||||||||||||||| Sbjct: 1125 atatctctcacatgtcagcggcgatcccctcgtcgccggc 1086
>emb|X62438.1|HVPERO H.vulgare mRNA for peroxidase Length = 740 Score = 291 bits (147), Expect = 3e-76 Identities = 153/155 (98%) Strand = Plus / Minus Query: 3 tttgacctcttatcttattggctagacatcacacttccacgattcaaagtttaaaacaca 62 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 649 tttgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacaca 590 Query: 63 tagactacttaacggccactcacacagtcacacagtactactacgttacaccgattgggt 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 589 tagactacttaacggccactcacacagtcacacagtactactacgttacaccgattggtt 530 Query: 123 atatatctctcacatgtcagcggcgatcccctcgt 157 ||||||||||||||||||||||||||||||||||| Sbjct: 529 atatatctctcacatgtcagcggcgatcccctcgt 495
>emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor (prx gene), cultivar Cheyenne Length = 1226 Score = 60.0 bits (30), Expect = 2e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 130 tctcacatgtcagcggcgatcccctcgtcgccgg 163 ||||||||||| |||||||||||||||||||||| Sbjct: 1107 tctcacatgtcggcggcgatcccctcgtcgccgg 1074
>gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, complete sequence Length = 253910 Score = 44.1 bits (22), Expect = 0.13 Identities = 25/26 (96%) Strand = Plus / Plus Query: 79 cactcacacagtcacacagtactact 104 |||||| ||||||||||||||||||| Sbjct: 35412 cactcatacagtcacacagtactact 35437
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 0.51 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 cctcttatcttattggctaga 28 ||||||||||||||||||||| Sbjct: 26526286 cctcttatcttattggctaga 26526266
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 0.51 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 cctcttatcttattggctaga 28 ||||||||||||||||||||| Sbjct: 26454455 cctcttatcttattggctaga 26454435
>emb|AL732532.4|CNS08C97 Oryza sativa chromosome 12, . BAC OSJNBa0027I07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146366 Score = 42.1 bits (21), Expect = 0.51 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 cctcttatcttattggctaga 28 ||||||||||||||||||||| Sbjct: 15790 cctcttatcttattggctaga 15810
>gb|AC168091.3| Mus musculus BAC clone RP23-163F18 from chromosome 14, complete sequence Length = 227936 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 cactcacacagtcacacag 97 ||||||||||||||||||| Sbjct: 81128 cactcacacagtcacacag 81110
>ref|XM_478764.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1472 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 146 cgatcccctcgtcgccggc 164 ||||||||||||||||||| Sbjct: 48 cgatcccctcgtcgccggc 66
>gb|AC124981.25| Mus musculus chromosome 5, clone RP24-170P20, complete sequence Length = 153767 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 78 ccactcacacagtcacaca 96 ||||||||||||||||||| Sbjct: 40858 ccactcacacagtcacaca 40876
>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10, complete sequence Length = 187034 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 78 ccactcacacagtcacaca 96 ||||||||||||||||||| Sbjct: 53218 ccactcacacagtcacaca 53236
>gb|AC105968.14| Mus musculus chromosome 18, clone RP23-265P4, complete sequence Length = 210819 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 48 aaagtttaaaacacataga 66 ||||||||||||||||||| Sbjct: 92308 aaagtttaaaacacataga 92290
>gb|AC141477.4| Mus musculus BAC clone RP23-386J14 from chromosome 10, complete sequence Length = 213720 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 ctcacacagtcacacagta 99 ||||||||||||||||||| Sbjct: 19062 ctcacacagtcacacagta 19044
>gb|AC121533.6| Mus musculus chromosome 9, clone RP24-555P22, complete sequence Length = 175009 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 78 ccactcacacagtcacaca 96 ||||||||||||||||||| Sbjct: 103284 ccactcacacagtcacaca 103302
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 78 ccactcacacagtcacaca 96 ||||||||||||||||||| Sbjct: 20254781 ccactcacacagtcacaca 20254763
>emb|CT010433.6| Mouse DNA sequence from clone RP23-239M23 on chromosome 17, complete sequence Length = 154367 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 cttccacgattcaaagttt 54 ||||||||||||||||||| Sbjct: 91284 cttccacgattcaaagttt 91302
>emb|Z69661.1|CEF48F7 Caenorhabditis elegans Cosmid F48F7, complete sequence Length = 29820 Score = 38.2 bits (19), Expect = 7.9 Identities = 25/27 (92%) Strand = Plus / Minus Query: 46 tcaaagtttaaaacacatagactactt 72 |||| ||||||| |||||||||||||| Sbjct: 25642 tcaaggtttaaatcacatagactactt 25616
>gb|AC132684.3| Mus musculus BAC clone RP23-277L20 from 9, complete sequence Length = 182976 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 78 ccactcacacagtcacaca 96 ||||||||||||||||||| Sbjct: 90066 ccactcacacagtcacaca 90048
>gb|AC006507.21| Mus musculus strain 129S6/SvEvTac clone rp21-580p20 map 10, complete sequence Length = 185664 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 ctcacacagtcacacagta 99 ||||||||||||||||||| Sbjct: 64997 ctcacacagtcacacagta 65015
>gb|AC140851.12| Mus musculus strain C57BL/6J clone rp23-358m4, complete sequence Length = 214913 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 ctcacacagtcacacagta 99 ||||||||||||||||||| Sbjct: 52423 ctcacacagtcacacagta 52441
>emb|AL357498.16| Human DNA sequence from clone RP11-342H9 on chromosome 6, complete sequence Length = 101064 Score = 38.2 bits (19), Expect = 7.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 74 acggccactcacacagtcacaca 96 |||||||||||||||| |||||| Sbjct: 72671 acggccactcacacagacacaca 72649
>emb|AL137782.9| Human DNA sequence from clone RP11-29G8 on chromosome 13q22.1-31.1 Contains part of the LMO7 gene for LIM domain only 7 (KIAA0858) and a novel pseudogene (FLJ13188, FLJ22977), complete sequence Length = 139252 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 ttcaaagtttaaaacacat 63 ||||||||||||||||||| Sbjct: 22785 ttcaaagtttaaaacacat 22767
>gb|AC154683.2| Mus musculus BAC clone RP23-142O4 from chromosome 14, complete sequence Length = 219067 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 cactcacacagtcacacag 97 ||||||||||||||||||| Sbjct: 190511 cactcacacagtcacacag 190493
>gb|AC084337.7| Homo sapiens chromosome 11, clone CTD-2010I16, complete sequence Length = 112295 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 tggctagacatcacacttc 39 ||||||||||||||||||| Sbjct: 46690 tggctagacatcacacttc 46708
>gb|AC068522.7| Homo sapiens chromosome 8, clone RP11-23K11, complete sequence Length = 146952 Score = 38.2 bits (19), Expect = 7.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 44 attcaaagtttaaaacacataga 66 ||||||| ||||||||||||||| Sbjct: 11516 attcaaaatttaaaacacataga 11538
>gb|AC009927.10| Homo sapiens chromosome 8, clone RP11-114M5, complete sequence Length = 166985 Score = 38.2 bits (19), Expect = 7.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 44 attcaaagtttaaaacacataga 66 ||||||| ||||||||||||||| Sbjct: 112216 attcaaaatttaaaacacataga 112238
>dbj|AK030425.1| Mus musculus adult male pituitary gland cDNA, RIKEN full-length enriched library, clone:5330411C23 product:unclassifiable, full insert sequence Length = 3637 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 76 ggccactcacacagtcaca 94 ||||||||||||||||||| Sbjct: 2412 ggccactcacacagtcaca 2430
>gb|AC084404.8|AC084404 Oryza sativa chromosome 3 BAC OSJNBa0026A15 genomic sequence, complete sequence Length = 156929 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 78 ccactcacacagtcacaca 96 ||||||||||||||||||| Sbjct: 50088 ccactcacacagtcacaca 50070
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 146 cgatcccctcgtcgccggc 164 ||||||||||||||||||| Sbjct: 22867465 cgatcccctcgtcgccggc 22867483
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 78 ccactcacacagtcacaca 96 ||||||||||||||||||| Sbjct: 28268976 ccactcacacagtcacaca 28268994
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 78 ccactcacacagtcacaca 96 ||||||||||||||||||| Sbjct: 20247810 ccactcacacagtcacaca 20247792
>gb|AC122744.16| Mus musculus chromosome 5, clone RP23-37I24, complete sequence Length = 175214 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 cactcacacagtcacacag 97 ||||||||||||||||||| Sbjct: 98220 cactcacacagtcacacag 98202
>gb|AC154807.2| Mus musculus BAC clone RP23-79E7 from chromosome 16, complete sequence Length = 256130 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 cactcacacagtcacacag 97 ||||||||||||||||||| Sbjct: 37035 cactcacacagtcacacag 37017
>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1019_E02 Length = 121607 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 146 cgatcccctcgtcgccggc 164 ||||||||||||||||||| Sbjct: 60732 cgatcccctcgtcgccggc 60750
>dbj|AK106380.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-D10, full insert sequence Length = 1471 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 146 cgatcccctcgtcgccggc 164 ||||||||||||||||||| Sbjct: 47 cgatcccctcgtcgccggc 65
>gb|AC167333.3| Mus musculus BAC clone RP23-92L4 from chromosome 5, complete sequence Length = 236596 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 78 ccactcacacagtcacaca 96 ||||||||||||||||||| Sbjct: 178813 ccactcacacagtcacaca 178831
>emb|AL596331.15| Mouse DNA sequence from clone RP23-81G14 on chromosome 11, complete sequence Length = 228391 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 76 ggccactcacacagtcaca 94 ||||||||||||||||||| Sbjct: 204053 ggccactcacacagtcaca 204035
>emb|AL672228.14| Mouse DNA sequence from clone RP24-133C15 on chromosome 11, complete sequence Length = 162556 Score = 38.2 bits (19), Expect = 7.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 80 actcacacagtcacacagt 98 ||||||||||||||||||| Sbjct: 83809 actcacacagtcacacagt 83827 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,201,841 Number of Sequences: 3902068 Number of extensions: 1201841 Number of successful extensions: 92147 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91846 Number of HSP's gapped (non-prelim): 301 length of query: 164 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 142 effective length of database: 17,147,199,772 effective search space: 2434902367624 effective search space used: 2434902367624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)