ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart51g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related ... 301 3e-79
2emb|X62438.1|HVPERO H.vulgare mRNA for peroxidase 291 3e-76
3emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor ... 60 2e-06
4gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, co... 44 0.13
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.51
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.51
7emb|AL732532.4|CNS08C97 Oryza sativa chromosome 12, . BAC OSJNBa... 42 0.51
8gb|AC168091.3| Mus musculus BAC clone RP23-163F18 from chromosom... 38 7.9
9ref|XM_478764.1| Oryza sativa (japonica cultivar-group), mRNA 38 7.9
10gb|AC124981.25| Mus musculus chromosome 5, clone RP24-170P20, co... 38 7.9
11gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome... 38 7.9
12gb|AC105968.14| Mus musculus chromosome 18, clone RP23-265P4, co... 38 7.9
13gb|AC141477.4| Mus musculus BAC clone RP23-386J14 from chromosom... 38 7.9
14gb|AC121533.6| Mus musculus chromosome 9, clone RP24-555P22, com... 38 7.9
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 7.9
16emb|CT010433.6| Mouse DNA sequence from clone RP23-239M23 on chr... 38 7.9
17emb|Z69661.1|CEF48F7 Caenorhabditis elegans Cosmid F48F7, comple... 38 7.9
18gb|AC132684.3| Mus musculus BAC clone RP23-277L20 from 9, comple... 38 7.9
19gb|AC006507.21| Mus musculus strain 129S6/SvEvTac clone rp21-580... 38 7.9
20gb|AC140851.12| Mus musculus strain C57BL/6J clone rp23-358m4, c... 38 7.9
21emb|AL357498.16| Human DNA sequence from clone RP11-342H9 on chr... 38 7.9
22emb|AL137782.9| Human DNA sequence from clone RP11-29G8 on chrom... 38 7.9
23gb|AC154683.2| Mus musculus BAC clone RP23-142O4 from chromosome... 38 7.9
24gb|AC084337.7| Homo sapiens chromosome 11, clone CTD-2010I16, co... 38 7.9
25gb|AC068522.7| Homo sapiens chromosome 8, clone RP11-23K11, comp... 38 7.9
26gb|AC009927.10| Homo sapiens chromosome 8, clone RP11-114M5, com... 38 7.9
27dbj|AK030425.1| Mus musculus adult male pituitary gland cDNA, RI... 38 7.9
28gb|AC084404.8|AC084404 Oryza sativa chromosome 3 BAC OSJNBa0026A... 38 7.9
29dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.9
30dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.9
31dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.9
32gb|AC122744.16| Mus musculus chromosome 5, clone RP23-37I24, com... 38 7.9
33gb|AC154807.2| Mus musculus BAC clone RP23-79E7 from chromosome ... 38 7.9
34dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.9
35dbj|AK106380.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 7.9
36gb|AC167333.3| Mus musculus BAC clone RP23-92L4 from chromosome ... 38 7.9
37emb|AL596331.15| Mouse DNA sequence from clone RP23-81G14 on chr... 38 7.9
38emb|AL672228.14| Mouse DNA sequence from clone RP24-133C15 on ch... 38 7.9

>emb|AJ003141.1|HVAJ3141 Hordeum vulgare mRNA for stress-related peroxidase
          Length = 1245

 Score =  301 bits (152), Expect = 3e-79
 Identities = 158/160 (98%)
 Strand = Plus / Minus

                                                                        
Query: 5    tgacctcttatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 64
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1245 tgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacacata 1186

                                                                        
Query: 65   gactacttaacggccactcacacagtcacacagtactactacgttacaccgattgggtat 124
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1185 gactacttaacggccactcacacagtcacacagtactactacgttacaccgattggttat 1126

                                                    
Query: 125  atatctctcacatgtcagcggcgatcccctcgtcgccggc 164
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1125 atatctctcacatgtcagcggcgatcccctcgtcgccggc 1086



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>emb|X62438.1|HVPERO H.vulgare mRNA for peroxidase
          Length = 740

 Score =  291 bits (147), Expect = 3e-76
 Identities = 153/155 (98%)
 Strand = Plus / Minus

                                                                       
Query: 3   tttgacctcttatcttattggctagacatcacacttccacgattcaaagtttaaaacaca 62
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tttgacctctcatcttattggctagacatcacacttccacgattcaaagtttaaaacaca 590

                                                                       
Query: 63  tagactacttaacggccactcacacagtcacacagtactactacgttacaccgattgggt 122
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 589 tagactacttaacggccactcacacagtcacacagtactactacgttacaccgattggtt 530

                                              
Query: 123 atatatctctcacatgtcagcggcgatcccctcgt 157
           |||||||||||||||||||||||||||||||||||
Sbjct: 529 atatatctctcacatgtcagcggcgatcccctcgt 495



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>emb|AJ878510.1| Triticum aestivum mRNA for peroxidase precursor (prx gene), cultivar
            Cheyenne
          Length = 1226

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                              
Query: 130  tctcacatgtcagcggcgatcccctcgtcgccgg 163
            ||||||||||| ||||||||||||||||||||||
Sbjct: 1107 tctcacatgtcggcggcgatcccctcgtcgccgg 1074



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>gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, complete sequence
          Length = 253910

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 79    cactcacacagtcacacagtactact 104
             |||||| |||||||||||||||||||
Sbjct: 35412 cactcatacagtcacacagtactact 35437



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 8        cctcttatcttattggctaga 28
                |||||||||||||||||||||
Sbjct: 26526286 cctcttatcttattggctaga 26526266



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 8        cctcttatcttattggctaga 28
                |||||||||||||||||||||
Sbjct: 26454455 cctcttatcttattggctaga 26454435



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>emb|AL732532.4|CNS08C97 Oryza sativa chromosome 12, . BAC OSJNBa0027I07 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 146366

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 8     cctcttatcttattggctaga 28
             |||||||||||||||||||||
Sbjct: 15790 cctcttatcttattggctaga 15810



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>gb|AC168091.3| Mus musculus BAC clone RP23-163F18 from chromosome 14, complete
             sequence
          Length = 227936

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 79    cactcacacagtcacacag 97
             |||||||||||||||||||
Sbjct: 81128 cactcacacagtcacacag 81110



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>ref|XM_478764.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1472

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 146 cgatcccctcgtcgccggc 164
           |||||||||||||||||||
Sbjct: 48  cgatcccctcgtcgccggc 66



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>gb|AC124981.25| Mus musculus chromosome 5, clone RP24-170P20, complete sequence
          Length = 153767

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 78    ccactcacacagtcacaca 96
             |||||||||||||||||||
Sbjct: 40858 ccactcacacagtcacaca 40876



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>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10,
             complete sequence
          Length = 187034

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 78    ccactcacacagtcacaca 96
             |||||||||||||||||||
Sbjct: 53218 ccactcacacagtcacaca 53236



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>gb|AC105968.14| Mus musculus chromosome 18, clone RP23-265P4, complete sequence
          Length = 210819

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 48    aaagtttaaaacacataga 66
             |||||||||||||||||||
Sbjct: 92308 aaagtttaaaacacataga 92290



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>gb|AC141477.4| Mus musculus BAC clone RP23-386J14 from chromosome 10, complete
             sequence
          Length = 213720

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 81    ctcacacagtcacacagta 99
             |||||||||||||||||||
Sbjct: 19062 ctcacacagtcacacagta 19044



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>gb|AC121533.6| Mus musculus chromosome 9, clone RP24-555P22, complete sequence
          Length = 175009

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 78     ccactcacacagtcacaca 96
              |||||||||||||||||||
Sbjct: 103284 ccactcacacagtcacaca 103302



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 78       ccactcacacagtcacaca 96
                |||||||||||||||||||
Sbjct: 20254781 ccactcacacagtcacaca 20254763



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>emb|CT010433.6| Mouse DNA sequence from clone RP23-239M23 on chromosome 17, complete
             sequence
          Length = 154367

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 36    cttccacgattcaaagttt 54
             |||||||||||||||||||
Sbjct: 91284 cttccacgattcaaagttt 91302



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>emb|Z69661.1|CEF48F7 Caenorhabditis elegans Cosmid F48F7, complete sequence
          Length = 29820

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 46    tcaaagtttaaaacacatagactactt 72
             |||| ||||||| ||||||||||||||
Sbjct: 25642 tcaaggtttaaatcacatagactactt 25616



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>gb|AC132684.3| Mus musculus BAC clone RP23-277L20 from 9, complete sequence
          Length = 182976

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 78    ccactcacacagtcacaca 96
             |||||||||||||||||||
Sbjct: 90066 ccactcacacagtcacaca 90048



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>gb|AC006507.21| Mus musculus strain 129S6/SvEvTac clone rp21-580p20 map 10, complete
             sequence
          Length = 185664

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 81    ctcacacagtcacacagta 99
             |||||||||||||||||||
Sbjct: 64997 ctcacacagtcacacagta 65015



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>gb|AC140851.12| Mus musculus strain C57BL/6J clone rp23-358m4, complete sequence
          Length = 214913

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 81    ctcacacagtcacacagta 99
             |||||||||||||||||||
Sbjct: 52423 ctcacacagtcacacagta 52441



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>emb|AL357498.16| Human DNA sequence from clone RP11-342H9 on chromosome 6, complete
             sequence
          Length = 101064

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 74    acggccactcacacagtcacaca 96
             |||||||||||||||| ||||||
Sbjct: 72671 acggccactcacacagacacaca 72649



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>emb|AL137782.9| Human DNA sequence from clone RP11-29G8 on chromosome 13q22.1-31.1
             Contains part of the LMO7 gene for LIM domain only 7
             (KIAA0858) and a novel pseudogene (FLJ13188, FLJ22977),
             complete sequence
          Length = 139252

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 45    ttcaaagtttaaaacacat 63
             |||||||||||||||||||
Sbjct: 22785 ttcaaagtttaaaacacat 22767



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>gb|AC154683.2| Mus musculus BAC clone RP23-142O4 from chromosome 14, complete sequence
          Length = 219067

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 79     cactcacacagtcacacag 97
              |||||||||||||||||||
Sbjct: 190511 cactcacacagtcacacag 190493



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>gb|AC084337.7| Homo sapiens chromosome 11, clone CTD-2010I16, complete sequence
          Length = 112295

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    tggctagacatcacacttc 39
             |||||||||||||||||||
Sbjct: 46690 tggctagacatcacacttc 46708



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>gb|AC068522.7| Homo sapiens chromosome 8, clone RP11-23K11, complete sequence
          Length = 146952

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 44    attcaaagtttaaaacacataga 66
             ||||||| |||||||||||||||
Sbjct: 11516 attcaaaatttaaaacacataga 11538



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>gb|AC009927.10| Homo sapiens chromosome 8, clone RP11-114M5, complete sequence
          Length = 166985

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 44     attcaaagtttaaaacacataga 66
              ||||||| |||||||||||||||
Sbjct: 112216 attcaaaatttaaaacacataga 112238



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>dbj|AK030425.1| Mus musculus adult male pituitary gland cDNA, RIKEN full-length
            enriched library, clone:5330411C23
            product:unclassifiable, full insert sequence
          Length = 3637

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 76   ggccactcacacagtcaca 94
            |||||||||||||||||||
Sbjct: 2412 ggccactcacacagtcaca 2430



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>gb|AC084404.8|AC084404 Oryza sativa chromosome 3 BAC OSJNBa0026A15 genomic sequence, complete
             sequence
          Length = 156929

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 78    ccactcacacagtcacaca 96
             |||||||||||||||||||
Sbjct: 50088 ccactcacacagtcacaca 50070



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 146      cgatcccctcgtcgccggc 164
                |||||||||||||||||||
Sbjct: 22867465 cgatcccctcgtcgccggc 22867483



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 78       ccactcacacagtcacaca 96
                |||||||||||||||||||
Sbjct: 28268976 ccactcacacagtcacaca 28268994



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 78       ccactcacacagtcacaca 96
                |||||||||||||||||||
Sbjct: 20247810 ccactcacacagtcacaca 20247792



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>gb|AC122744.16| Mus musculus chromosome 5, clone RP23-37I24, complete sequence
          Length = 175214

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 79    cactcacacagtcacacag 97
             |||||||||||||||||||
Sbjct: 98220 cactcacacagtcacacag 98202



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>gb|AC154807.2| Mus musculus BAC clone RP23-79E7 from chromosome 16, complete sequence
          Length = 256130

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 79    cactcacacagtcacacag 97
             |||||||||||||||||||
Sbjct: 37035 cactcacacagtcacacag 37017



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>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1019_E02
          Length = 121607

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 146   cgatcccctcgtcgccggc 164
             |||||||||||||||||||
Sbjct: 60732 cgatcccctcgtcgccggc 60750



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>dbj|AK106380.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-D10, full
           insert sequence
          Length = 1471

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 146 cgatcccctcgtcgccggc 164
           |||||||||||||||||||
Sbjct: 47  cgatcccctcgtcgccggc 65



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>gb|AC167333.3| Mus musculus BAC clone RP23-92L4 from chromosome 5, complete sequence
          Length = 236596

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 78     ccactcacacagtcacaca 96
              |||||||||||||||||||
Sbjct: 178813 ccactcacacagtcacaca 178831



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>emb|AL596331.15| Mouse DNA sequence from clone RP23-81G14 on chromosome 11, complete
              sequence
          Length = 228391

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 76     ggccactcacacagtcaca 94
              |||||||||||||||||||
Sbjct: 204053 ggccactcacacagtcaca 204035



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>emb|AL672228.14| Mouse DNA sequence from clone RP24-133C15 on chromosome 11, complete
             sequence
          Length = 162556

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 80    actcacacagtcacacagt 98
             |||||||||||||||||||
Sbjct: 83809 actcacacagtcacacagt 83827


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,201,841
Number of Sequences: 3902068
Number of extensions: 1201841
Number of successful extensions: 92147
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91846
Number of HSP's gapped (non-prelim): 301
length of query: 164
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 142
effective length of database: 17,147,199,772
effective search space: 2434902367624
effective search space used: 2434902367624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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