ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart51g03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_481984.1| Oryza sativa (japonica cultivar-group), mRNA 149 7e-33
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 149 7e-33
3dbj|AP005817.3| Oryza sativa (japonica cultivar-group) genomic D... 149 7e-33
4dbj|AP003913.3| Oryza sativa (japonica cultivar-group) genomic D... 149 7e-33
5dbj|AK105533.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 7e-33
6gb|AY850389.1| Azospirillum brasilense disrupted FtsA (ftsA) gen... 46 0.078
7gb|AC167562.5| Culex pipiens quinquefasciatus, clone Culex pipie... 46 0.078
8gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 44 0.31
9gb|AC118621.6| Mus musculus chromosome 7, clone RP24-63H14, comp... 42 1.2
10ref|NM_194911.1| Oryza sativa (japonica cultivar-group) putative... 42 1.2
11gb|AC135956.6| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.2
13emb|X56928.1|ATTECR A.teichomyceticus tecR gene, ORF's 1 & 2 42 1.2
14gb|AC097446.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
15gb|AC137589.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
16gb|AC144558.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
17dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
19dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
20dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
21dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
22gb|AC120537.6| Oryza sativa chromosome 3 BAC OSJNBb0042N11 genom... 42 1.2
23dbj|AP006162.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
24dbj|AP005560.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
25emb|BX005335.9| Zebrafish DNA sequence from clone DKEY-240N8, co... 42 1.2
26emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 42 1.2
27gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
28gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
29gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
30emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.2
31emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.2
32ref|NM_001003386.1| Canis familiaris keratin 2A (epidermal ichth... 40 4.8
33ref|XM_470396.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.8
34gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 4.8
35gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genom... 40 4.8
36ref|XM_359450.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 4.8
37gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 4.8
38gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 4.8
39gb|AC109202.14| Mus musculus chromosome 15, clone RP23-11B7, com... 40 4.8
40gb|AF040570.3| Amycolatopsis mediterranei rifamycin biosynthetic... 40 4.8
41gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genom... 40 4.8
42gb|AC125389.33| Medicago truncatula clone mth2-12a18, complete s... 40 4.8
43emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 4.8
44emb|AJ223012.1|AMM223012 Amycolatopsis mediterranei genes encodi... 40 4.8
45gb|CP000249.1| Frankia sp. CcI3, complete genome 40 4.8
46gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 4.8
47gb|AC015977.9| Homo sapiens BAC clone RP11-527I18 from 2, comple... 40 4.8
48gb|AC012501.7| Homo sapiens BAC clone RP11-440F15 from 2, comple... 40 4.8
49gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, comple... 40 4.8
50gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.8
51dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 4.8
52dbj|AP004661.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
53dbj|AK105971.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.8
54gb|AY318943.1| Canis familiaris epithelial keratin 2e (K2e) mRNA... 40 4.8 
>ref|XM_481984.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1017

 Score =  149 bits (75), Expect = 7e-33
 Identities = 117/131 (89%)
 Strand = Plus / Minus

                                                                       
Query: 227 ccagccggcggccaactcgaagccgctgcggcggttcaggtagtcctccctggcctgttg 286
           |||||||||||||| |||||||||| ||||||||||| ||||||| ||||||||||| | 
Sbjct: 978 ccagccggcggccatctcgaagccgttgcggcggttccggtagtcttccctggcctgctc 919

                                                                       
Query: 287 cacctcctcgctcgtgttcatcacgaaggggccgtccatcgccaccgcctcgccgtgcgg 346
           ||||||||| |  |||||||||||||| || |||||| || |||| ||||||||||||||
Sbjct: 918 cacctcctcccgggtgttcatcacgaacggcccgtccttcaccacggcctcgccgtgcgg 859

                      
Query: 347 ccgcgccgcca 357
           |||||||||||
Sbjct: 858 ccgcgccgcca 848
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  149 bits (75), Expect = 7e-33
 Identities = 117/131 (89%)
 Strand = Plus / Minus

                                                                            
Query: 227      ccagccggcggccaactcgaagccgctgcggcggttcaggtagtcctccctggcctgttg 286
                |||||||||||||| |||||||||| ||||||||||| ||||||| ||||||||||| | 
Sbjct: 16888880 ccagccggcggccatctcgaagccgttgcggcggttccggtagtcttccctggcctgctc 16888821

                                                                            
Query: 287      cacctcctcgctcgtgttcatcacgaaggggccgtccatcgccaccgcctcgccgtgcgg 346
                ||||||||| |  |||||||||||||| || |||||| || |||| ||||||||||||||
Sbjct: 16888820 cacctcctcccgggtgttcatcacgaacggcccgtccttcaccacggcctcgccgtgcgg 16888761

                           
Query: 347      ccgcgccgcca 357
                |||||||||||
Sbjct: 16888760 ccgcgccgcca 16888750



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 329      caccgcctcgccgtgcggcc 348
                ||||||||||||||||||||
Sbjct: 14031707 caccgcctcgccgtgcggcc 14031688
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>dbj|AP005817.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1118_F01
          Length = 119248

 Score =  149 bits (75), Expect = 7e-33
 Identities = 117/131 (89%)
 Strand = Plus / Minus

                                                                          
Query: 227    ccagccggcggccaactcgaagccgctgcggcggttcaggtagtcctccctggcctgttg 286
              |||||||||||||| |||||||||| ||||||||||| ||||||| ||||||||||| | 
Sbjct: 102245 ccagccggcggccatctcgaagccgttgcggcggttccggtagtcttccctggcctgctc 102186

                                                                          
Query: 287    cacctcctcgctcgtgttcatcacgaaggggccgtccatcgccaccgcctcgccgtgcgg 346
              ||||||||| |  |||||||||||||| || |||||| || |||| ||||||||||||||
Sbjct: 102185 cacctcctcccgggtgttcatcacgaacggcccgtccttcaccacggcctcgccgtgcgg 102126

                         
Query: 347    ccgcgccgcca 357
              |||||||||||
Sbjct: 102125 ccgcgccgcca 102115
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>dbj|AP003913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1484_G09
          Length = 124695

 Score =  149 bits (75), Expect = 7e-33
 Identities = 117/131 (89%)
 Strand = Plus / Minus

                                                                         
Query: 227   ccagccggcggccaactcgaagccgctgcggcggttcaggtagtcctccctggcctgttg 286
             |||||||||||||| |||||||||| ||||||||||| ||||||| ||||||||||| | 
Sbjct: 35891 ccagccggcggccatctcgaagccgttgcggcggttccggtagtcttccctggcctgctc 35832

                                                                         
Query: 287   cacctcctcgctcgtgttcatcacgaaggggccgtccatcgccaccgcctcgccgtgcgg 346
             ||||||||| |  |||||||||||||| || |||||| || |||| ||||||||||||||
Sbjct: 35831 cacctcctcccgggtgttcatcacgaacggcccgtccttcaccacggcctcgccgtgcgg 35772

                        
Query: 347   ccgcgccgcca 357
             |||||||||||
Sbjct: 35771 ccgcgccgcca 35761
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>dbj|AK105533.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G12, full
            insert sequence
          Length = 1726

 Score =  149 bits (75), Expect = 7e-33
 Identities = 117/131 (89%)
 Strand = Plus / Minus

                                                                        
Query: 227  ccagccggcggccaactcgaagccgctgcggcggttcaggtagtcctccctggcctgttg 286
            |||||||||||||| |||||||||| ||||||||||| ||||||| ||||||||||| | 
Sbjct: 1453 ccagccggcggccatctcgaagccgttgcggcggttccggtagtcttccctggcctgctc 1394

                                                                        
Query: 287  cacctcctcgctcgtgttcatcacgaaggggccgtccatcgccaccgcctcgccgtgcgg 346
            ||||||||| |  |||||||||||||| || |||||| || |||| ||||||||||||||
Sbjct: 1393 cacctcctcccgggtgttcatcacgaacggcccgtccttcaccacggcctcgccgtgcgg 1334

                       
Query: 347  ccgcgccgcca 357
            |||||||||||
Sbjct: 1333 ccgcgccgcca 1323
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>gb|AY850389.1| Azospirillum brasilense disrupted FtsA (ftsA) gene, partial sequence
          Length = 1530

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 53/63 (84%)
 Strand = Plus / Plus

                                                                        
Query: 287  cacctcctcgctcgtgttcatcacgaaggggccgtccatcgccaccgcctcgccgtgcgg 346
            |||||||||||   ||||||| |||||||||||| ||   ||||||| ||||||| ||||
Sbjct: 1308 cacctcctcgcggctgttcatgacgaaggggccgccccaggccaccggctcgccgagcgg 1367

               
Query: 347  ccg 349
            |||
Sbjct: 1368 ccg 1370
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>gb|AC167562.5| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940122D9, complete sequence
          Length = 114898

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 299   cgtgttcatcacgaaggggccgt 321
             |||||||||||||||||||||||
Sbjct: 32831 cgtgttcatcacgaaggggccgt 32853
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 300     gtgttcatcacgaaggggccgt 321
               ||||||||||||||||||||||
Sbjct: 2476571 gtgttcatcacgaaggggccgt 2476550
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>gb|AC118621.6| Mus musculus chromosome 7, clone RP24-63H14, complete sequence
          Length = 230898

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 131    caggaaagaaaatacatgcaa 151
              |||||||||||||||||||||
Sbjct: 103302 caggaaagaaaatacatgcaa 103282
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>ref|NM_194911.1| Oryza sativa (japonica cultivar-group) putative gag-pol precursor
            (OSJNBa0034B05.19), mRNA
          Length = 2055

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 329  caccgcctcgccgtgcggccg 349
            |||||||||||||||||||||
Sbjct: 1318 caccgcctcgccgtgcggccg 1338
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>gb|AC135956.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0005H20, complete sequence
          Length = 135560

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 329   caccgcctcgccgtgcggccg 349
             |||||||||||||||||||||
Sbjct: 68977 caccgcctcgccgtgcggccg 68957
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 329      caccgcctcgccgtgcggccg 349
                |||||||||||||||||||||
Sbjct: 29416993 caccgcctcgccgtgcggccg 29417013



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 329      caccgcctcgccgtgcggccg 349
                |||||||||||||||||||||
Sbjct: 21942086 caccgcctcgccgtgcggccg 21942106



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 300      gtgttcatcacgaaggggcc 319
                ||||||||||||||||||||
Sbjct: 35220656 gtgttcatcacgaaggggcc 35220675



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 337      cgccgtgcggccgcgccgcc 356
                ||||||||||||||||||||
Sbjct: 21815196 cgccgtgcggccgcgccgcc 21815215
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>emb|X56928.1|ATTECR A.teichomyceticus tecR gene, ORF's 1 & 2
          Length = 2614

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 324  atcgccaccgcctcgccgtgc 344
            |||||||||||||||||||||
Sbjct: 1511 atcgccaccgcctcgccgtgc 1531
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>gb|AC097446.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0034B05, complete sequence
          Length = 175061

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 329   caccgcctcgccgtgcggccg 349
             |||||||||||||||||||||
Sbjct: 88381 caccgcctcgccgtgcggccg 88361
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>gb|AC137589.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0072L08, complete sequence
          Length = 152272

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 333   gcctcgccgtgcggccgcgccgcca 357
             ||||||| |||||||||||||||||
Sbjct: 73068 gcctcgctgtgcggccgcgccgcca 73092
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>gb|AC144558.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0072L08, sequencing in progress, complete sequence
          Length = 152272

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 333   gcctcgccgtgcggccgcgccgcca 357
             ||||||| |||||||||||||||||
Sbjct: 73068 gcctcgctgtgcggccgcgccgcca 73092
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 319      cgtccatcgccaccgcctcgccgtg 343
                |||||||| ||||||||||||||||
Sbjct: 25798640 cgtccatctccaccgcctcgccgtg 25798616
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 333      gcctcgccgtgcggccgcgccgcca 357
                ||||||| |||||||||||||||||
Sbjct: 21070753 gcctcgctgtgcggccgcgccgcca 21070777
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 329     caccgcctcgccgtgcggccg 349
               |||||||||||||||||||||
Sbjct: 3316536 caccgcctcgccgtgcggccg 3316516
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 329      caccgcctcgccgtgcggccg 349
                |||||||||||||||||||||
Sbjct: 22530048 caccgcctcgccgtgcggccg 22530068



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 329     caccgcctcgccgtgcggccg 349
               |||||||||||||||||||||
Sbjct: 3057591 caccgcctcgccgtgcggccg 3057611
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 329      caccgcctcgccgtgcggccg 349
                |||||||||||||||||||||
Sbjct: 29508415 caccgcctcgccgtgcggccg 29508435



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 329      caccgcctcgccgtgcggccg 349
                |||||||||||||||||||||
Sbjct: 21935115 caccgcctcgccgtgcggccg 21935135



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 300      gtgttcatcacgaaggggcc 319
                ||||||||||||||||||||
Sbjct: 35310728 gtgttcatcacgaaggggcc 35310747



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 337      cgccgtgcggccgcgccgcc 356
                ||||||||||||||||||||
Sbjct: 21808225 cgccgtgcggccgcgccgcc 21808244
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>gb|AC120537.6| Oryza sativa chromosome 3 BAC OSJNBb0042N11 genomic sequence, complete
             sequence
          Length = 127210

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 329   caccgcctcgccgtgcggccg 349
             |||||||||||||||||||||
Sbjct: 66930 caccgcctcgccgtgcggccg 66910
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>dbj|AP006162.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1331F11
          Length = 132205

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 329   caccgcctcgccgtgcggccg 349
             |||||||||||||||||||||
Sbjct: 45249 caccgcctcgccgtgcggccg 45269
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>dbj|AP005560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1178_D01
          Length = 121768

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 329   caccgcctcgccgtgcggccg 349
             |||||||||||||||||||||
Sbjct: 77557 caccgcctcgccgtgcggccg 77577
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>emb|BX005335.9| Zebrafish DNA sequence from clone DKEY-240N8, complete sequence
          Length = 211094

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 132    aggaaagaaaatacatgcaat 152
              |||||||||||||||||||||
Sbjct: 203883 aggaaagaaaatacatgcaat 203863
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 223    aggaccagccggcggccaact 243
              |||||||||||||||||||||
Sbjct: 195399 aggaccagccggcggccaact 195419
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 329     caccgcctcgccgtgcggccg 349
               |||||||||||||||||||||
Sbjct: 3316457 caccgcctcgccgtgcggccg 3316437
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 333      gcctcgccgtgcggccgcgccgcca 357
                ||||||| |||||||||||||||||
Sbjct: 21380994 gcctcgctgtgcggccgcgccgcca 21381018
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 319      cgtccatcgccaccgcctcgccgtg 343
                |||||||| ||||||||||||||||
Sbjct: 25726816 cgtccatctccaccgcctcgccgtg 25726792
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>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 137492

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 319   cgtccatcgccaccgcctcgccgtg 343
             |||||||| ||||||||||||||||
Sbjct: 20091 cgtccatctccaccgcctcgccgtg 20067
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>emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa0002L05 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 167131

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 319    cgtccatcgccaccgcctcgccgtg 343
              |||||||| ||||||||||||||||
Sbjct: 165878 cgtccatctccaccgcctcgccgtg 165854
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>ref|NM_001003386.1| Canis familiaris keratin 2A (epidermal ichthyosis bullosa of Siemens)
            (KRT2A), mRNA
          Length = 1902

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 269  gtcctccctggcctgttgca 288
            ||||||||||||||||||||
Sbjct: 1401 gtcctccctggcctgttgca 1382
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>ref|XM_470396.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1344

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  gtgttcatcacgaaggggcc 319
            ||||||||||||||||||||
Sbjct: 1052 gtgttcatcacgaaggggcc 1033
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 342     tgcggccgcgccgccagcag 361
               ||||||||||||||||||||
Sbjct: 2356797 tgcggccgcgccgccagcag 2356778
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>gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genomic sequence, complete
             sequence
          Length = 139771

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   cgccgtgcggccgcgccgcc 356
             ||||||||||||||||||||
Sbjct: 72620 cgccgtgcggccgcgccgcc 72601
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>ref|XM_359450.1| Magnaporthe grisea 70-15 hypothetical protein (MG05327.4) partial
           mRNA
          Length = 705

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 276 ctggcctgttgcacctcctc 295
           ||||||||||||||||||||
Sbjct: 455 ctggcctgttgcacctcctc 436
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 302     gttcatcacgaaggggccgt 321
               ||||||||||||||||||||
Sbjct: 1295200 gttcatcacgaaggggccgt 1295219
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 336     tcgccgtgcggccgcgccgccagc 359
               |||||||||| |||||||||||||
Sbjct: 2554852 tcgccgtgcgcccgcgccgccagc 2554829



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 336    tcgccgtgcggccgcgccgccagc 359
              |||||||||| |||||||||||||
Sbjct: 523794 tcgccgtgcgcccgcgccgccagc 523817
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>gb|AC109202.14| Mus musculus chromosome 15, clone RP23-11B7, complete sequence
          Length = 236690

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 125    ctgggccaggaaagaaaata 144
              ||||||||||||||||||||
Sbjct: 192216 ctgggccaggaaagaaaata 192235
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>gb|AF040570.3| Amycolatopsis mediterranei rifamycin biosynthetic gene cluster
          Length = 109528

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   atcgccaccgcctcgccgtg 343
             ||||||||||||||||||||
Sbjct: 69742 atcgccaccgcctcgccgtg 69723
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>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete
             sequence
          Length = 156606

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   gtgttcatcacgaaggggcc 319
             ||||||||||||||||||||
Sbjct: 99417 gtgttcatcacgaaggggcc 99436
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>gb|AC125389.33| Medicago truncatula clone mth2-12a18, complete sequence
          Length = 143015

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 168    tgttgttggcccaccaatgtttgt 191
              |||||||| |||||||||||||||
Sbjct: 135470 tgttgttgtcccaccaatgtttgt 135447
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 336     tcgccgtgcggccgcgccgccagc 359
               |||||||||| |||||||||||||
Sbjct: 1843060 tcgccgtgcgcccgcgccgccagc 1843083



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 336    tcgccgtgcggccgcgccgccagc 359
              |||||||||| |||||||||||||
Sbjct: 734897 tcgccgtgcgcccgcgccgccagc 734874
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>emb|AJ223012.1|AMM223012 Amycolatopsis mediterranei genes encoding rifamycin polyketide
             synthases, ORFs 1 to 5
          Length = 53784

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 324   atcgccaccgcctcgccgtg 343
             ||||||||||||||||||||
Sbjct: 53337 atcgccaccgcctcgccgtg 53318
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 339     ccgtgcggccgcgccgccag 358
               ||||||||||||||||||||
Sbjct: 1266883 ccgtgcggccgcgccgccag 1266902
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 336    tcgccgtgcggccgcgccgccagc 359
              |||||||||| |||||||||||||
Sbjct: 940848 tcgccgtgcgcccgcgccgccagc 940825



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 336    tcgccgtgcggccgcgccgccagc 359
              |||||||||| |||||||||||||
Sbjct: 465791 tcgccgtgcgcccgcgccgccagc 465768
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>gb|AC015977.9| Homo sapiens BAC clone RP11-527I18 from 2, complete sequence
          Length = 176625

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   ctgttgttggcccaccaatg 186
             ||||||||||||||||||||
Sbjct: 15045 ctgttgttggcccaccaatg 15064
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>gb|AC012501.7| Homo sapiens BAC clone RP11-440F15 from 2, complete sequence
          Length = 214838

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     catcatgcaatgcttgtatt 32
              ||||||||||||||||||||
Sbjct: 184520 catcatgcaatgcttgtatt 184501
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>gb|AC017081.8| Homo sapiens BAC clone RP11-470J24 from 2, complete sequence
          Length = 149462

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    ccattgaattggattttgag 108
             ||||||||||||||||||||
Sbjct: 54810 ccattgaattggattttgag 54791
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 326     cgccaccgcctcgccgtgcg 345
               ||||||||||||||||||||
Sbjct: 1413737 cgccaccgcctcgccgtgcg 1413756
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 320    gtccatcgccaccgcctcgc 339
              ||||||||||||||||||||
Sbjct: 823378 gtccatcgccaccgcctcgc 823359
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>dbj|AP004661.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0048E12
          Length = 152543

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   caccgcctcgccgtgcggcc 348
             ||||||||||||||||||||
Sbjct: 63598 caccgcctcgccgtgcggcc 63579
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>dbj|AK105971.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F02, full
            insert sequence
          Length = 1344

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  gtgttcatcacgaaggggcc 319
            ||||||||||||||||||||
Sbjct: 1052 gtgttcatcacgaaggggcc 1033
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>gb|AY318943.1| Canis familiaris epithelial keratin 2e (K2e) mRNA, complete cds
          Length = 1902

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 269  gtcctccctggcctgttgca 288
            ||||||||||||||||||||
Sbjct: 1401 gtcctccctggcctgttgca 1382


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,202,644
Number of Sequences: 3902068
Number of extensions: 3202644
Number of successful extensions: 67324
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66143
Number of HSP's gapped (non-prelim): 1181
length of query: 361
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 339
effective length of database: 17,147,199,772
effective search space: 5812900722708
effective search space used: 5812900722708
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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