ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart51g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPY_DROME (O44783) Protein sprouty (Spry) 30 1.9
2UBE3C_MOUSE (Q80U95) Ubiquitin-protein ligase E3C (EC 6.3.2.-) 28 4.3
3YAS2_SCHPO (Q10138) Hypothetical protein C3H8.02 in chromosome I 28 5.6
4SDAC_SHIFL (Q83QD0) Serine transporter 28 7.4
5SDAC_ECOLI (P0AAD6) Serine transporter 28 7.4
6SDAC_ECO57 (P0AAD7) Serine transporter 28 7.4
7CO7_HUMAN (P10643) Complement component C7 precursor 27 9.6

>SPY_DROME (O44783) Protein sprouty (Spry)|
          Length = 589

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +1

Query: 31  PSLETENVCPRNSLCRSITCESVNPLFLLW 120
           PSL    VCPR   CR   C+S  PL   W
Sbjct: 370 PSLLNPIVCPRCGRCRCEQCQSPRPLPQTW 399



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>UBE3C_MOUSE (Q80U95) Ubiquitin-protein ligase E3C (EC 6.3.2.-)|
          Length = 1083

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -2

Query: 215 VLYIKSKMIVRIFLSVHGSFEECFYRDVRNVGHRRKR--GFTLSQVILLHRLLRGQTFSV 42
           + Y+ S +     +S+H +  E F   +  VG R+     FTL ++ILL R LR     +
Sbjct: 499 LFYLFSSLFSHSLISIHDN--EFFGDPIEVVGQRQSSMMPFTLEELILLSRCLRDACLGI 556

Query: 41  SRL 33
            +L
Sbjct: 557 IKL 559



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>YAS2_SCHPO (Q10138) Hypothetical protein C3H8.02 in chromosome I|
          Length = 444

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 278 WTIKYEMEASKFLSSAIYMDSVLYIKSKMIVRIFLSVHGSFEECFYRDVRNV 123
           +T+K  +      SS+  + SV Y KS+  + +  S HGS    F    +NV
Sbjct: 42  YTVKTHLSDDSSSSSSHRLSSVSYAKSRTRLELTSSSHGSDTRSFNDKTKNV 93



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>SDAC_SHIFL (Q83QD0) Serine transporter|
          Length = 429

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 79  SYIGYYVGRRFQFQGLVISSL 17
           S++G+Y+G R  F G+VI SL
Sbjct: 316 SFLGHYLGAREGFNGMVIKSL 336



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>SDAC_ECOLI (P0AAD6) Serine transporter|
          Length = 429

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 79  SYIGYYVGRRFQFQGLVISSL 17
           S++G+Y+G R  F G+VI SL
Sbjct: 316 SFLGHYLGAREGFNGMVIKSL 336



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>SDAC_ECO57 (P0AAD7) Serine transporter|
          Length = 429

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 79  SYIGYYVGRRFQFQGLVISSL 17
           S++G+Y+G R  F G+VI SL
Sbjct: 316 SFLGHYLGAREGFNGMVIKSL 336



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>CO7_HUMAN (P10643) Complement component C7 precursor|
          Length = 843

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 16  TVMKLPSLETENVCPRNSLCRSITCESVNPLFLLW 120
           +V  LP +  + + P   L + + C SV  L+L W
Sbjct: 409 SVTNLPQVIKQKLTPLYELVKEVPCASVKKLYLKW 443


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,376,517
Number of Sequences: 219361
Number of extensions: 739323
Number of successful extensions: 1519
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1518
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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