ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart51f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1I17RD_HUMAN (Q8NFM7) Interleukin-17 receptor D precursor (IL-17 ... 28 5.4
2KRA34_SHEEP (P02445) Keratin, high sulfur matrix protein, IIIB4 28 5.4
3MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac... 28 5.4
4ADEN_ADEO7 (Q83906) Adenain (EC 3.4.22.39) (Endoprotease) (Late ... 28 7.1
5OR8G2_HUMAN (Q15614) Olfactory receptor 8G2 (Olfactory receptor ... 28 7.1
6CCND3_MOUSE (P30282) G1/S-specific cyclin-D3 27 9.2
7CCND3_RAT (P48961) G1/S-specific cyclin-D3 27 9.2
8S12A1_RAT (P55016) Solute carrier family 12 member 1 (Bumetanide... 27 9.2
9SYL_THETN (Q8RCT6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 27 9.2

>I17RD_HUMAN (Q8NFM7) Interleukin-17 receptor D precursor (IL-17 receptor D)|
           (IL-17RD) (Interleukin-17D receptor) (IL-17D receptor)
           (IL17Rhom) (Interleukin-17 receptor-like protein) (Sef
           homolog) (hSef)
          Length = 739

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 22/72 (30%), Positives = 31/72 (43%)
 Frame = +2

Query: 86  ASIYKQLRQ*KGSSSKFSELHIQIANTCGAQGNTE*VE*LSGGITHMDRGTELSSGTTHM 265
           ++I ++LRQ K SSS      I +      +G+   +  LS     MD   +L S     
Sbjct: 455 SAIAEKLRQAKQSSSAALSKFIAVYFDYSCEGDVPGILDLSTKYRLMDNLPQLCSHLHSR 514

Query: 266 DHGTTNTEQHAR 301
           DHG     QH R
Sbjct: 515 DHGLQEPGQHTR 526



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>KRA34_SHEEP (P02445) Keratin, high sulfur matrix protein, IIIB4|
          Length = 98

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 19/89 (21%)
 Frame = -3

Query: 309 CLVRACCSVFVVP*SM---------CVVPLDSSVPRSIWVMPPDSYSTYSVLPC---APH 166
           C  R CCSV   P +          C V L S+ P ++W + P         PC    P 
Sbjct: 2   CCARLCCSVPTSPATTICSSDKFCRCGVCLPSTCPHTVWFLQPTCCCDNRPPPCHIPQPS 61

Query: 165 VLAICICNS-------ENLELLPFYCRSC 100
           V    + NS       E++ L  +   SC
Sbjct: 62  VPTCFLLNSSQPTPGLESINLTTYTQPSC 90



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>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 212  GITHMDRGTELSSGTTHMDHGTTNTEQHA 298
            G TH+   TE S+GT+H    TT T QH+
Sbjct: 2752 GTTHI---TEPSTGTSHTPAATTGTTQHS 2777



 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 212  GITHMDRGTELSSGTTHMDHGTTNTEQHA 298
            G TH+   TE S+GT+H    TT T QH+
Sbjct: 2223 GTTHI---TEPSTGTSHTPAATTGTTQHS 2248



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>ADEN_ADEO7 (Q83906) Adenain (EC 3.4.22.39) (Endoprotease) (Late L3 23 kDa|
           protein)
          Length = 201

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -3

Query: 330 KKT*NAGCLVRACCSVFVVP*SMCVVPLDSSVPRSIWVMPPDSYSTYSVLPCAPHVL 160
           + T +  C     C +F +    C      +V +S W+    + ST S++PC PH+L
Sbjct: 109 RNTQSVQCTCAGSCGLFCIFFLYCFHFYKQNVFKS-WLFQKLNGSTPSLIPCEPHLL 164



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>OR8G2_HUMAN (Q15614) Olfactory receptor 8G2 (Olfactory receptor TPCR120)|
           (Olfactory receptor OR11-297)
          Length = 310

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -2

Query: 313 WLSRACMLLGVCGSVIHVRSATRQFGSPIHMGN-ATRQLLNLLGVTLCSACISYLYMQL* 137
           WL+    +LG+ GS IH     R F    ++ N     L  LLG++  S  I+ L + + 
Sbjct: 143 WLTVGVYILGILGSTIHTSFMLRLFLCKTNVINHYFCDLFPLLGLSCSSTYINELLVLV- 201

Query: 136 KLGTATFLLPQLLV 95
            L     L+P L +
Sbjct: 202 -LSAFNILMPALTI 214



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>CCND3_MOUSE (P30282) G1/S-specific cyclin-D3|
          Length = 292

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = -2

Query: 169 ACISYLYMQL*KLGTATFLLPQLLVDTCPVT----CVYARQMCFVW 44
           +C+     QL  LGT   LL   L +T P+T    C+Y  Q    W
Sbjct: 90  SCVPTRKAQLQLLGTVCLLLASKLRETTPLTIEKLCIYTDQAVAPW 135



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>CCND3_RAT (P48961) G1/S-specific cyclin-D3|
          Length = 293

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = -2

Query: 169 ACISYLYMQL*KLGTATFLLPQLLVDTCPVT----CVYARQMCFVW 44
           +C+     QL  LGT   LL   L +T P+T    C+Y  Q    W
Sbjct: 90  SCVPTRKAQLQLLGTVCLLLASKLRETTPLTIEKLCIYTDQAMAPW 135



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>S12A1_RAT (P55016) Solute carrier family 12 member 1 (Bumetanide-sensitive|
           sodium-(potassium)-chloride cotransporter 2)
           (Kidney-specific Na-K-Cl symporter)
          Length = 1095

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 324 T*NAGCLVRACCSVFVVP*SMCVVPLDSSV-PRSIWVM 214
           T N+G  +  CC VFV P  +CV  ++S +  +  W+M
Sbjct: 701 TKNSGLCI--CCEVFVGPRKLCVKEMNSGMAKKQAWLM 736



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>SYL_THETN (Q8RCT6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 819

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 114 YCRSCL*ILALSLVCMLGRCVSCGCSVRNENPAEWMF 4
           +C SC  +LA   V + G+C  CG  V  +   +W F
Sbjct: 159 WCPSCQTVLANEQV-IDGKCERCGTEVTKKELTQWFF 194


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,199,224
Number of Sequences: 219361
Number of extensions: 1257710
Number of successful extensions: 3123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3122
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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