ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart51f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
2dbj|AK072892.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 3e-20
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 107 3e-20
4emb|AL772418.4|CNS08C9W Oryza sativa chromosome 12, . Partial se... 107 3e-20
5emb|X05288.1|PAT1GL P.anubis alpha-globin-like theta (1)-globin ... 42 1.3
6emb|X03950.1|PPGLTG P.pygmaeus alpha-globin-like theta(1)-globin... 42 1.3
7gb|AC147098.2| Mus musculus BAC clone RP23-452E7 from chromosome... 40 5.1
8gb|AC138312.3| Mus musculus BAC clone RP23-235K7 from chromosome... 40 5.1
9dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.1

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  107 bits (54), Expect = 3e-20
 Identities = 120/142 (84%)
 Strand = Plus / Minus

                                                                            
Query: 211      agcacactgcccctgcagtaggggcagtcgccgtgggatcgaagccaccgttcgaggcag 270
                ||||| ||| ||||||||||||||||||||| | | || || ||||| || |||||||||
Sbjct: 24097900 agcacgctggccctgcagtaggggcagtcgctgcgagagcgcagccatcgctcgaggcag 24097841

                                                                            
Query: 271      gccgagtggaagacatgcttgcagcgcagctgcatgagcccgtccgcctcgccgcacctc 330
                |||||||||||||  |||||||| |||||||  | |||||| || || || || || |||
Sbjct: 24097840 gccgagtggaagatgtgcttgcaccgcagctcgaggagcccatctgcatccccacatctc 24097781

                                      
Query: 331      tccaggcatatcgagcactccg 352
                ||||||||||| ||||||||||
Sbjct: 24097780 tccaggcatatagagcactccg 24097759



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>dbj|AK072892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149P20, full
           insert sequence
          Length = 1249

 Score =  107 bits (54), Expect = 3e-20
 Identities = 120/142 (84%)
 Strand = Plus / Minus

                                                                       
Query: 211 agcacactgcccctgcagtaggggcagtcgccgtgggatcgaagccaccgttcgaggcag 270
           ||||| ||| ||||||||||||||||||||| | | || || ||||| || |||||||||
Sbjct: 890 agcacgctggccctgcagtaggggcagtcgctgcgagagcgcagccatcgctcgaggcag 831

                                                                       
Query: 271 gccgagtggaagacatgcttgcagcgcagctgcatgagcccgtccgcctcgccgcacctc 330
           |||||||||||||  |||||||| |||||||  | |||||| || || || || || |||
Sbjct: 830 gccgagtggaagatgtgcttgcaccgcagctcgaggagcccatctgcatccccacatctc 771

                                 
Query: 331 tccaggcatatcgagcactccg 352
           ||||||||||| ||||||||||
Sbjct: 770 tccaggcatatagagcactccg 749



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  107 bits (54), Expect = 3e-20
 Identities = 120/142 (84%)
 Strand = Plus / Minus

                                                                            
Query: 211      agcacactgcccctgcagtaggggcagtcgccgtgggatcgaagccaccgttcgaggcag 270
                ||||| ||| ||||||||||||||||||||| | | || || ||||| || |||||||||
Sbjct: 24026106 agcacgctggccctgcagtaggggcagtcgctgcgagagcgcagccatcgctcgaggcag 24026047

                                                                            
Query: 271      gccgagtggaagacatgcttgcagcgcagctgcatgagcccgtccgcctcgccgcacctc 330
                |||||||||||||  |||||||| |||||||  | |||||| || || || || || |||
Sbjct: 24026046 gccgagtggaagatgtgcttgcaccgcagctcgaggagcccatctgcatccccacatctc 24025987

                                      
Query: 331      tccaggcatatcgagcactccg 352
                ||||||||||| ||||||||||
Sbjct: 24025986 tccaggcatatagagcactccg 24025965



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>emb|AL772418.4|CNS08C9W Oryza sativa chromosome 12, . Partial sequence from BAC OJ1473_A04 of
             library Monsanto from chromosome 12 of cultivar Nipponbare
             of ssp. japonica of Oryza sativa (rice), complete sequence
          Length = 32463

 Score =  107 bits (54), Expect = 3e-20
 Identities = 120/142 (84%)
 Strand = Plus / Minus

                                                                         
Query: 211   agcacactgcccctgcagtaggggcagtcgccgtgggatcgaagccaccgttcgaggcag 270
             ||||| ||| ||||||||||||||||||||| | | || || ||||| || |||||||||
Sbjct: 12974 agcacgctggccctgcagtaggggcagtcgctgcgagagcgcagccatcgctcgaggcag 12915

                                                                         
Query: 271   gccgagtggaagacatgcttgcagcgcagctgcatgagcccgtccgcctcgccgcacctc 330
             |||||||||||||  |||||||| |||||||  | |||||| || || || || || |||
Sbjct: 12914 gccgagtggaagatgtgcttgcaccgcagctcgaggagcccatctgcatccccacatctc 12855

                                   
Query: 331   tccaggcatatcgagcactccg 352
             ||||||||||| ||||||||||
Sbjct: 12854 tccaggcatatagagcactccg 12833



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>emb|X05288.1|PAT1GL P.anubis alpha-globin-like theta (1)-globin gene
          Length = 1118

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 316 gcctcgccgcacctctccagg 336
           |||||||||||||||||||||
Sbjct: 467 gcctcgccgcacctctccagg 447



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>emb|X03950.1|PPGLTG P.pygmaeus alpha-globin-like theta(1)-globin gene downstream from
           adult alpha(1)-globin gene
          Length = 1072

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 316 gcctcgccgcacctctccagg 336
           |||||||||||||||||||||
Sbjct: 384 gcctcgccgcacctctccagg 364



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>gb|AC147098.2| Mus musculus BAC clone RP23-452E7 from chromosome 9, complete sequence
          Length = 199612

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   ttgagttttctcattcatcc 201
             ||||||||||||||||||||
Sbjct: 16001 ttgagttttctcattcatcc 15982



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>gb|AC138312.3| Mus musculus BAC clone RP23-235K7 from chromosome 9, complete sequence
          Length = 176504

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    ttgagttttctcattcatcc 201
              ||||||||||||||||||||
Sbjct: 139497 ttgagttttctcattcatcc 139478



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    gccgtgggatcgaagccacc 259
              ||||||||||||||||||||
Sbjct: 318388 gccgtgggatcgaagccacc 318407


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,527,923
Number of Sequences: 3902068
Number of extensions: 2527923
Number of successful extensions: 52568
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52503
Number of HSP's gapped (non-prelim): 65
length of query: 383
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 361
effective length of database: 17,147,199,772
effective search space: 6190139117692
effective search space used: 6190139117692
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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