Clone Name | rbart51f07 |
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Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 107 bits (54), Expect = 3e-20 Identities = 120/142 (84%) Strand = Plus / Minus Query: 211 agcacactgcccctgcagtaggggcagtcgccgtgggatcgaagccaccgttcgaggcag 270 ||||| ||| ||||||||||||||||||||| | | || || ||||| || ||||||||| Sbjct: 24097900 agcacgctggccctgcagtaggggcagtcgctgcgagagcgcagccatcgctcgaggcag 24097841 Query: 271 gccgagtggaagacatgcttgcagcgcagctgcatgagcccgtccgcctcgccgcacctc 330 ||||||||||||| |||||||| ||||||| | |||||| || || || || || ||| Sbjct: 24097840 gccgagtggaagatgtgcttgcaccgcagctcgaggagcccatctgcatccccacatctc 24097781 Query: 331 tccaggcatatcgagcactccg 352 ||||||||||| |||||||||| Sbjct: 24097780 tccaggcatatagagcactccg 24097759
>dbj|AK072892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149P20, full insert sequence Length = 1249 Score = 107 bits (54), Expect = 3e-20 Identities = 120/142 (84%) Strand = Plus / Minus Query: 211 agcacactgcccctgcagtaggggcagtcgccgtgggatcgaagccaccgttcgaggcag 270 ||||| ||| ||||||||||||||||||||| | | || || ||||| || ||||||||| Sbjct: 890 agcacgctggccctgcagtaggggcagtcgctgcgagagcgcagccatcgctcgaggcag 831 Query: 271 gccgagtggaagacatgcttgcagcgcagctgcatgagcccgtccgcctcgccgcacctc 330 ||||||||||||| |||||||| ||||||| | |||||| || || || || || ||| Sbjct: 830 gccgagtggaagatgtgcttgcaccgcagctcgaggagcccatctgcatccccacatctc 771 Query: 331 tccaggcatatcgagcactccg 352 ||||||||||| |||||||||| Sbjct: 770 tccaggcatatagagcactccg 749
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 107 bits (54), Expect = 3e-20 Identities = 120/142 (84%) Strand = Plus / Minus Query: 211 agcacactgcccctgcagtaggggcagtcgccgtgggatcgaagccaccgttcgaggcag 270 ||||| ||| ||||||||||||||||||||| | | || || ||||| || ||||||||| Sbjct: 24026106 agcacgctggccctgcagtaggggcagtcgctgcgagagcgcagccatcgctcgaggcag 24026047 Query: 271 gccgagtggaagacatgcttgcagcgcagctgcatgagcccgtccgcctcgccgcacctc 330 ||||||||||||| |||||||| ||||||| | |||||| || || || || || ||| Sbjct: 24026046 gccgagtggaagatgtgcttgcaccgcagctcgaggagcccatctgcatccccacatctc 24025987 Query: 331 tccaggcatatcgagcactccg 352 ||||||||||| |||||||||| Sbjct: 24025986 tccaggcatatagagcactccg 24025965
>emb|AL772418.4|CNS08C9W Oryza sativa chromosome 12, . Partial sequence from BAC OJ1473_A04 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 32463 Score = 107 bits (54), Expect = 3e-20 Identities = 120/142 (84%) Strand = Plus / Minus Query: 211 agcacactgcccctgcagtaggggcagtcgccgtgggatcgaagccaccgttcgaggcag 270 ||||| ||| ||||||||||||||||||||| | | || || ||||| || ||||||||| Sbjct: 12974 agcacgctggccctgcagtaggggcagtcgctgcgagagcgcagccatcgctcgaggcag 12915 Query: 271 gccgagtggaagacatgcttgcagcgcagctgcatgagcccgtccgcctcgccgcacctc 330 ||||||||||||| |||||||| ||||||| | |||||| || || || || || ||| Sbjct: 12914 gccgagtggaagatgtgcttgcaccgcagctcgaggagcccatctgcatccccacatctc 12855 Query: 331 tccaggcatatcgagcactccg 352 ||||||||||| |||||||||| Sbjct: 12854 tccaggcatatagagcactccg 12833
>emb|X05288.1|PAT1GL P.anubis alpha-globin-like theta (1)-globin gene Length = 1118 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 316 gcctcgccgcacctctccagg 336 ||||||||||||||||||||| Sbjct: 467 gcctcgccgcacctctccagg 447
>emb|X03950.1|PPGLTG P.pygmaeus alpha-globin-like theta(1)-globin gene downstream from adult alpha(1)-globin gene Length = 1072 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 316 gcctcgccgcacctctccagg 336 ||||||||||||||||||||| Sbjct: 384 gcctcgccgcacctctccagg 364
>gb|AC147098.2| Mus musculus BAC clone RP23-452E7 from chromosome 9, complete sequence Length = 199612 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 ttgagttttctcattcatcc 201 |||||||||||||||||||| Sbjct: 16001 ttgagttttctcattcatcc 15982
>gb|AC138312.3| Mus musculus BAC clone RP23-235K7 from chromosome 9, complete sequence Length = 176504 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 ttgagttttctcattcatcc 201 |||||||||||||||||||| Sbjct: 139497 ttgagttttctcattcatcc 139478
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 gccgtgggatcgaagccacc 259 |||||||||||||||||||| Sbjct: 318388 gccgtgggatcgaagccacc 318407 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,527,923 Number of Sequences: 3902068 Number of extensions: 2527923 Number of successful extensions: 52568 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52503 Number of HSP's gapped (non-prelim): 65 length of query: 383 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 361 effective length of database: 17,147,199,772 effective search space: 6190139117692 effective search space used: 6190139117692 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)