ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart51f06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X76911.1|HVEMIP H.vulgare mRNA for transmembrane protein 50 4e-04
2gb|AC117203.4| Mus musculus BAC clone RP23-251N4 from chromosome... 38 1.6
3gb|AC159987.5| Mus musculus 10 BAC RP23-475N14 (Roswell Park Can... 38 1.6
4gb|AC156271.5| Mus musculus 10 BAC RP24-317L8 (Roswell Park Canc... 38 1.6
5ref|XM_457592.1| Debaryomyces hansenii CBS767 hypothetical prote... 36 6.2
6gb|AC098739.3| Mus musculus BAC clone RP23-122G2 from 6, complet... 36 6.2
7gb|CP000316.1| Polaromonas sp. JS666, complete genome 36 6.2
8emb|AL137118.20| Human DNA sequence from clone RP11-108P5 on chr... 36 6.2
9emb|AL022339.1|HSN75B3 Human DNA sequence from clone LL22NC03-75... 36 6.2
10gb|AC090363.16| Homo sapiens chromosome 18, clone RP11-885J19, c... 36 6.2
11emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS... 36 6.2
12gb|AC103814.2| Homo sapiens chromosome 18, clone CTD-3111I19, co... 36 6.2
13gb|AC012339.8| Homo sapiens chromosome 8, clone RP11-31K23, comp... 36 6.2
14dbj|AK165211.1| Mus musculus 6 days neonate spleen cDNA, RIKEN f... 36 6.2
15dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 36 6.2
16gb|AC126275.3| Mus musculus BAC clone RP23-111N17 from 14, compl... 36 6.2
17emb|Z19157.1|CEZC84 Caenorhabditis elegans Cosmid ZC84, complete... 36 6.2
18emb|AL121764.1|SPAC9 S.pombe chromosome I cosmid c9 36 6.2
19gb|AC159106.2| Mus musculus chromosome 14 clone RP23-244I11, com... 36 6.2 
>emb|X76911.1|HVEMIP H.vulgare mRNA for transmembrane protein
          Length = 1225

 Score = 50.1 bits (25), Expect = 4e-04
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 24   aacaactttgctggatttgcacaac 48
            |||||||||||||||||||||||||
Sbjct: 1199 aacaactttgctggatttgcacaac 1175
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>gb|AC117203.4| Mus musculus BAC clone RP23-251N4 from chromosome 10, complete sequence
          Length = 231532

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 21    tgaaacaactttgctggat 39
             |||||||||||||||||||
Sbjct: 19423 tgaaacaactttgctggat 19405
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>gb|AC159987.5| Mus musculus 10 BAC RP23-475N14 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 172772

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 21     tgaaacaactttgctggat 39
              |||||||||||||||||||
Sbjct: 103748 tgaaacaactttgctggat 103730
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>gb|AC156271.5| Mus musculus 10 BAC RP24-317L8 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 191073

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    tgaaacaactttgctggat 39
             |||||||||||||||||||
Sbjct: 19159 tgaaacaactttgctggat 19177
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>ref|XM_457592.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0B14938g)
          partial mRNA
          Length = 1491

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                            
Query: 26 caactttgctggatttgc 43
          ||||||||||||||||||
Sbjct: 42 caactttgctggatttgc 59
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>gb|AC098739.3| Mus musculus BAC clone RP23-122G2 from 6, complete sequence
          Length = 221146

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 19     cctgaaacaactttgctg 36
              ||||||||||||||||||
Sbjct: 209116 cctgaaacaactttgctg 209133
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 31      ttgctggatttgcacaac 48
               ||||||||||||||||||
Sbjct: 2727923 ttgctggatttgcacaac 2727906
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>emb|AL137118.20| Human DNA sequence from clone RP11-108P5 on chromosome 13q14.12-21.1
             Contains the CYSLTR2 gene for cysteinyl leukotriene
             receptor 2 (CYSLT2, CYSLT2R), complete sequence
          Length = 162446

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 20    ctgaaacaactttgctgg 37
             ||||||||||||||||||
Sbjct: 11838 ctgaaacaactttgctgg 11855
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>emb|AL022339.1|HSN75B3 Human DNA sequence from clone LL22NC03-75B3 on chromosome 22,
            complete sequence
          Length = 40476

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                  
Query: 1    taattgaaaagggcactacctg 22
            |||||||||||| |||||||||
Sbjct: 4246 taattgaaaaggtcactacctg 4225
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>gb|AC090363.16| Homo sapiens chromosome 18, clone RP11-885J19, complete sequence
          Length = 152200

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 14    cactacctgaaacaactttgct 35
             |||||||||||||||| |||||
Sbjct: 34976 cactacctgaaacaaccttgct 34997
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>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces
               hansenii
          Length = 1349926

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 26      caactttgctggatttgc 43
               ||||||||||||||||||
Sbjct: 1167139 caactttgctggatttgc 1167122
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>gb|AC103814.2| Homo sapiens chromosome 18, clone CTD-3111I19, complete sequence
          Length = 172461

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 14    cactacctgaaacaactttgct 35
             |||||||||||||||| |||||
Sbjct: 70493 cactacctgaaacaaccttgct 70514
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>gb|AC012339.8| Homo sapiens chromosome 8, clone RP11-31K23, complete sequence
          Length = 179818

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 25     acaactttgctggatttg 42
              ||||||||||||||||||
Sbjct: 109348 acaactttgctggatttg 109331
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>dbj|AK165211.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched
            library, clone:F420005O21 product:potassium channel,
            subfamily K, member 5, full insert sequence
          Length = 2469

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 7    aaaagggcactacctgaa 24
            ||||||||||||||||||
Sbjct: 1233 aaaagggcactacctgaa 1216
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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 20     ctgaaacaactttgctgg 37
              ||||||||||||||||||
Sbjct: 686414 ctgaaacaactttgctgg 686397
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>gb|AC126275.3| Mus musculus BAC clone RP23-111N17 from 14, complete sequence
          Length = 211542

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 7     aaaagggcactacctgaa 24
             ||||||||||||||||||
Sbjct: 36956 aaaagggcactacctgaa 36939
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>emb|Z19157.1|CEZC84 Caenorhabditis elegans Cosmid ZC84, complete sequence
          Length = 38955

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 17    tacctgaaacaactttgc 34
             ||||||||||||||||||
Sbjct: 32368 tacctgaaacaactttgc 32351
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>emb|AL121764.1|SPAC9 S.pombe chromosome I cosmid c9
          Length = 35000

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 30    tttgctggatttgcacaa 47
             ||||||||||||||||||
Sbjct: 27046 tttgctggatttgcacaa 27063
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>gb|AC159106.2| Mus musculus chromosome 14 clone RP23-244I11, complete sequence
          Length = 168884

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 7      aaaagggcactacctgaa 24
              ||||||||||||||||||
Sbjct: 151598 aaaagggcactacctgaa 151581


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 375,258
Number of Sequences: 3902068
Number of extensions: 375258
Number of successful extensions: 91798
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91729
Number of HSP's gapped (non-prelim): 69
length of query: 48
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 28
effective length of database: 17,155,003,908
effective search space: 480340109424
effective search space used: 480340109424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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