ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart51f02 |
|---|---|
| Clone Library Name | barley_pub |
>RU2B_MOUSE (Q9CQI7) U2 small nuclear ribonucleoprotein B"| Length = 225 Score = 38.1 bits (87), Expect = 0.005 Identities = 20/34 (58%), Positives = 26/34 (76%), Gaps = 1/34 (2%) Frame = -2 Query: 392 VEYGDEGQATAAMNLLQGFKI-KENPMRITYAKK 294 VE+ ++GQA AA + LQGFKI + M+ITYAKK Sbjct: 192 VEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -2 Query: 392 VEYGDEGQATAAMNLLQGFKIKENPMRITYAK 297 V + + G +T A+ LQGF PMRI YAK Sbjct: 54 VIFKELGSSTNALRQLQGFPFYGKPMRIQYAK 85
>RU2B_HUMAN (P08579) U2 small nuclear ribonucleoprotein B"| Length = 225 Score = 38.1 bits (87), Expect = 0.005 Identities = 20/34 (58%), Positives = 26/34 (76%), Gaps = 1/34 (2%) Frame = -2 Query: 392 VEYGDEGQATAAMNLLQGFKI-KENPMRITYAKK 294 VE+ ++GQA AA + LQGFKI + M+ITYAKK Sbjct: 192 VEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -2 Query: 392 VEYGDEGQATAAMNLLQGFKIKENPMRITYAK 297 V + + G +T A+ LQGF PMRI YAK Sbjct: 54 VIFKELGSSTNALRQLQGFPFYGKPMRIQYAK 85
>SNRPA_HUMAN (P09012) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1A protein) (U1-A) Length = 281 Score = 35.8 bits (81), Expect = 0.025 Identities = 19/34 (55%), Positives = 26/34 (76%), Gaps = 1/34 (2%) Frame = -2 Query: 392 VEYGDEGQATAAMNLLQGFKI-KENPMRITYAKK 294 VE+ +E QA AA + LQGFKI + N M+I++AKK Sbjct: 248 VEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 281 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = -2 Query: 392 VEYGDEGQATAAMNLLQGFKIKENPMRITYAK 297 V + + AT A+ +QGF + PMRI YAK Sbjct: 56 VIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 87
>SNRPA_MOUSE (Q62189) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1A protein) (U1-A) Length = 286 Score = 35.8 bits (81), Expect = 0.025 Identities = 19/34 (55%), Positives = 26/34 (76%), Gaps = 1/34 (2%) Frame = -2 Query: 392 VEYGDEGQATAAMNLLQGFKI-KENPMRITYAKK 294 VE+ +E QA AA + LQGFKI + N M+I++AKK Sbjct: 253 VEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 286 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -2 Query: 368 ATAAMNLLQGFKIKENPMRITYAK 297 AT A+ +QGF + PMRI YAK Sbjct: 70 ATNALRSMQGFPFYDKPMRIQYAK 93
>SNRPA_XENLA (P45429) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1A protein) (U1-A) Length = 282 Score = 35.0 bits (79), Expect = 0.043 Identities = 19/34 (55%), Positives = 25/34 (73%), Gaps = 1/34 (2%) Frame = -2 Query: 392 VEYGDEGQATAAMNLLQGFKI-KENPMRITYAKK 294 VE+ +E QA AA LQGFKI + N M+I++AKK Sbjct: 249 VEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -2 Query: 392 VEYGDEGQATAAMNLLQGFKIKENPMRITYAK 297 V + + AT A+ +QGF + PMRI Y+K Sbjct: 57 VIFKETSSATNALRSMQGFPFYDKPMRIQYSK 88
>SNRPA_DROME (P43332) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1-A) (Sex determination protein snf) Length = 216 Score = 32.0 bits (71), Expect = 0.37 Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%) Frame = -2 Query: 392 VEYGDEGQATAAMNLLQGFKI-KENPMRITYAKK 294 VE+ E Q+ AA LQGFKI + M+IT+AKK Sbjct: 183 VEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/32 (37%), Positives = 20/32 (62%) Frame = -2 Query: 392 VEYGDEGQATAAMNLLQGFKIKENPMRITYAK 297 V + + G A+ A+ +QGF + PM+I Y+K Sbjct: 54 VIFKEIGSASNALRTMQGFPFYDKPMQIAYSK 85
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = -2 Query: 392 VEYGDEGQATAAMNLLQGFKIKENPMRITYAK 297 V Y D A A+N L G K++ ++++YA+ Sbjct: 85 VNYSDPNDADKAINTLNGLKLQTKTIKVSYAR 116
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = -2 Query: 392 VEYGDEGQATAAMNLLQGFKIKENPMRITYAK 297 V Y D A A+N L G K++ ++++YA+ Sbjct: 85 VNYSDPNDADKAINTLNGLKLQTKTIKVSYAR 116
>RPOC_TREPA (O83270) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1416 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%) Frame = +3 Query: 171 RTLIYTGLNH--GVVYLTCEENLPDGAKP 251 RT++Y + G+ YLT E +LP+GA+P Sbjct: 486 RTIVYPSQDMVLGLYYLTKERSLPEGARP 514
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -2 Query: 392 VEYGDEGQATAAMNLLQGFKIKENPMRI 309 VEY +E QA+ A+ + G IKEN +++ Sbjct: 864 VEYENESQASQAVMKMDGMTIKENVIKV 891
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -2 Query: 392 VEYGDEGQATAAMNLLQGFKIKENPMRI 309 VEY +E QA+ A+ + G IKEN +++ Sbjct: 846 VEYENESQASQAVMKMDGMTIKENIIKV 873
>IFNA_MELGA (P51527) Interferon precursor (TkIFN)| Length = 192 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = -3 Query: 223 SHVR*TTPW-FNP-V*INVRLSCIYASMLGSSFQSCIW 116 SH R T W NP + IN SC++A + + + +C W Sbjct: 132 SHTRSRTRWPHNPHLTINKHFSCLHAFLHDNDYSACAW 169 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,462,870 Number of Sequences: 219361 Number of extensions: 1009156 Number of successful extensions: 1871 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1804 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1871 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
