ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart51f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY111018.1| Zea mays CL6482_1 mRNA sequence 44 0.34
2dbj|AK112143.1| Ciona intestinalis cDNA, clone:cieg001l14, full ... 42 1.3
3gb|BT013700.1| Lycopersicon esculentum clone 132542R, mRNA sequence 40 5.3
4emb|AL359199.34| Human DNA sequence from clone RP11-296A20 on ch... 40 5.3
5gb|AC123515.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3
6emb|BX000980.13| Zebrafish DNA sequence from clone CH211-136D9, ... 40 5.3
7gb|AC021937.7| Homo sapiens chromosome 8, clone RP11-812B1, comp... 40 5.3
8gb|AC091959.3| Homo sapiens chromosome 5 clone RP11-449H3, compl... 40 5.3
9gb|AC144374.5| Gallus gallus strain White Leghorn clone xx-37d21... 40 5.3
10gb|AC099343.3| Homo sapiens BAC clone RP11-326I11 from 4, comple... 40 5.3
11gb|AC018574.6| Homo sapiens chromosome , clone RP11-4G2, complet... 40 5.3
12dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
13dbj|AP003476.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 5.3
14dbj|AP003475.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 5.3
15gb|AC161018.4| Pan troglodytes BAC clone CH251-345F11 from chrom... 40 5.3
16gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3

>gb|AY111018.1| Zea mays CL6482_1 mRNA sequence
          Length = 1143

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 291 ttacttcttcgcatatgtgatg 312
           ||||||||||||||||||||||
Sbjct: 826 ttacttcttcgcatatgtgatg 805



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>dbj|AK112143.1| Ciona intestinalis cDNA, clone:cieg001l14, full insert sequence
          Length = 1613

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 233 accagatggtgcaaaaccagggcta 257
           |||||||||||||||| ||||||||
Sbjct: 594 accagatggtgcaaaatcagggcta 618



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>gb|BT013700.1| Lycopersicon esculentum clone 132542R, mRNA sequence
          Length = 2354

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 16   tgataaacttgtggaaaaat 35
            ||||||||||||||||||||
Sbjct: 1719 tgataaacttgtggaaaaat 1738



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>emb|AL359199.34| Human DNA sequence from clone RP11-296A20 on chromosome 1 Contains the
             5' end of the CAPZB gene for capping protein (actin
             filament) muscle Z-line, beta, complete sequence
          Length = 148290

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    cgaaattggcaacatatgat 84
             ||||||||||||||||||||
Sbjct: 26105 cgaaattggcaacatatgat 26124



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>gb|AC123515.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0033E08, complete sequence
          Length = 149241

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 108   tgccaaacccaaatacatga 127
             ||||||||||||||||||||
Sbjct: 48772 tgccaaacccaaatacatga 48753



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>emb|BX000980.13| Zebrafish DNA sequence from clone CH211-136D9, complete sequence
          Length = 169191

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 12   tttgtgataaacttgtggaaaaat 35
            ||||||| ||||||||||||||||
Sbjct: 6969 tttgtgagaaacttgtggaaaaat 6992



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>gb|AC021937.7| Homo sapiens chromosome 8, clone RP11-812B1, complete sequence
          Length = 164435

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   aaatacatgactgaaaagag 137
             ||||||||||||||||||||
Sbjct: 21001 aaatacatgactgaaaagag 20982



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>gb|AC091959.3| Homo sapiens chromosome 5 clone RP11-449H3, complete sequence
          Length = 155839

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   ggctacaacattaattcaag 272
             ||||||||||||||||||||
Sbjct: 87377 ggctacaacattaattcaag 87396



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>gb|AC144374.5| Gallus gallus strain White Leghorn clone xx-37d21, complete sequence
          Length = 141874

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   gtgaagaaaatctaccagat 239
             ||||||||||||||||||||
Sbjct: 98110 gtgaagaaaatctaccagat 98091



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>gb|AC099343.3| Homo sapiens BAC clone RP11-326I11 from 4, complete sequence
          Length = 196216

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   acccaaatacatgactgaaa 133
             ||||||||||||||||||||
Sbjct: 61526 acccaaatacatgactgaaa 61545



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>gb|AC018574.6| Homo sapiens chromosome , clone RP11-4G2, complete sequence
          Length = 171858

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 327    tttgattttgaaaccctgaa 346
              ||||||||||||||||||||
Sbjct: 146494 tttgattttgaaaccctgaa 146475



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 108     tgccaaacccaaatacatga 127
               ||||||||||||||||||||
Sbjct: 5713215 tgccaaacccaaatacatga 5713196



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>dbj|AP003476.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB2033H1
          Length = 179650

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   aaatacatgactgaaaagag 137
             ||||||||||||||||||||
Sbjct: 30028 aaatacatgactgaaaagag 30047



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>dbj|AP003475.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB2021C9
          Length = 147261

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    aaatacatgactgaaaagag 137
              ||||||||||||||||||||
Sbjct: 134030 aaatacatgactgaaaagag 134049



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>gb|AC161018.4| Pan troglodytes BAC clone CH251-345F11 from chromosome unknown,
             complete sequence
          Length = 153379

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   aaatacatgactgaaaagag 137
             ||||||||||||||||||||
Sbjct: 82503 aaatacatgactgaaaagag 82522



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 108     tgccaaacccaaatacatga 127
               ||||||||||||||||||||
Sbjct: 5779692 tgccaaacccaaatacatga 5779673


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,552,492
Number of Sequences: 3902068
Number of extensions: 3552492
Number of successful extensions: 66081
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66009
Number of HSP's gapped (non-prelim): 72
length of query: 393
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 371
effective length of database: 17,147,199,772
effective search space: 6361611115412
effective search space used: 6361611115412
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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