Clone Name | rbart51f02 |
---|---|
Clone Library Name | barley_pub |
>gb|AY111018.1| Zea mays CL6482_1 mRNA sequence Length = 1143 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 291 ttacttcttcgcatatgtgatg 312 |||||||||||||||||||||| Sbjct: 826 ttacttcttcgcatatgtgatg 805
>dbj|AK112143.1| Ciona intestinalis cDNA, clone:cieg001l14, full insert sequence Length = 1613 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 233 accagatggtgcaaaaccagggcta 257 |||||||||||||||| |||||||| Sbjct: 594 accagatggtgcaaaatcagggcta 618
>gb|BT013700.1| Lycopersicon esculentum clone 132542R, mRNA sequence Length = 2354 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 tgataaacttgtggaaaaat 35 |||||||||||||||||||| Sbjct: 1719 tgataaacttgtggaaaaat 1738
>emb|AL359199.34| Human DNA sequence from clone RP11-296A20 on chromosome 1 Contains the 5' end of the CAPZB gene for capping protein (actin filament) muscle Z-line, beta, complete sequence Length = 148290 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 cgaaattggcaacatatgat 84 |||||||||||||||||||| Sbjct: 26105 cgaaattggcaacatatgat 26124
>gb|AC123515.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0033E08, complete sequence Length = 149241 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 tgccaaacccaaatacatga 127 |||||||||||||||||||| Sbjct: 48772 tgccaaacccaaatacatga 48753
>emb|BX000980.13| Zebrafish DNA sequence from clone CH211-136D9, complete sequence Length = 169191 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 tttgtgataaacttgtggaaaaat 35 ||||||| |||||||||||||||| Sbjct: 6969 tttgtgagaaacttgtggaaaaat 6992
>gb|AC021937.7| Homo sapiens chromosome 8, clone RP11-812B1, complete sequence Length = 164435 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 aaatacatgactgaaaagag 137 |||||||||||||||||||| Sbjct: 21001 aaatacatgactgaaaagag 20982
>gb|AC091959.3| Homo sapiens chromosome 5 clone RP11-449H3, complete sequence Length = 155839 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 ggctacaacattaattcaag 272 |||||||||||||||||||| Sbjct: 87377 ggctacaacattaattcaag 87396
>gb|AC144374.5| Gallus gallus strain White Leghorn clone xx-37d21, complete sequence Length = 141874 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 gtgaagaaaatctaccagat 239 |||||||||||||||||||| Sbjct: 98110 gtgaagaaaatctaccagat 98091
>gb|AC099343.3| Homo sapiens BAC clone RP11-326I11 from 4, complete sequence Length = 196216 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 acccaaatacatgactgaaa 133 |||||||||||||||||||| Sbjct: 61526 acccaaatacatgactgaaa 61545
>gb|AC018574.6| Homo sapiens chromosome , clone RP11-4G2, complete sequence Length = 171858 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 tttgattttgaaaccctgaa 346 |||||||||||||||||||| Sbjct: 146494 tttgattttgaaaccctgaa 146475
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 tgccaaacccaaatacatga 127 |||||||||||||||||||| Sbjct: 5713215 tgccaaacccaaatacatga 5713196
>dbj|AP003476.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB2033H1 Length = 179650 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 aaatacatgactgaaaagag 137 |||||||||||||||||||| Sbjct: 30028 aaatacatgactgaaaagag 30047
>dbj|AP003475.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB2021C9 Length = 147261 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 aaatacatgactgaaaagag 137 |||||||||||||||||||| Sbjct: 134030 aaatacatgactgaaaagag 134049
>gb|AC161018.4| Pan troglodytes BAC clone CH251-345F11 from chromosome unknown, complete sequence Length = 153379 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 aaatacatgactgaaaagag 137 |||||||||||||||||||| Sbjct: 82503 aaatacatgactgaaaagag 82522
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 tgccaaacccaaatacatga 127 |||||||||||||||||||| Sbjct: 5779692 tgccaaacccaaatacatga 5779673 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,552,492 Number of Sequences: 3902068 Number of extensions: 3552492 Number of successful extensions: 66081 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66009 Number of HSP's gapped (non-prelim): 72 length of query: 393 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 371 effective length of database: 17,147,199,772 effective search space: 6361611115412 effective search space used: 6361611115412 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)