ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart51e10 |
|---|---|
| Clone Library Name | barley_pub |
>LGT_TROW8 (Q83HQ2) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)| Length = 272 Score = 29.6 bits (65), Expect = 2.0 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = -2 Query: 175 VSLLLCFESVGLLSDISVWGCYSTIAWLSDLSSAGF**RRVSCYLRSIFIVGYVL 11 + + LCF +G + V+G +T+ W LS GF V Y IF+ +L Sbjct: 130 ILVALCFARLGNYFNGEVFGTETTLPWGLKLSHEGFKDLNVEKYFHPIFLYEIIL 184
>RL36_MOUSE (P47964) 60S ribosomal protein L36| Length = 104 Score = 29.3 bits (64), Expect = 2.6 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 4/29 (13%) Frame = +3 Query: 138 SKPTDSKHRSKLTTH----NEMVNNACGF 212 SKP S+ RS+LT H +M+ CGF Sbjct: 21 SKPRHSRRRSRLTNHTKFVRDMIREVCGF 49
>LGT_TROWT (Q820B8) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)| Length = 272 Score = 29.3 bits (64), Expect = 2.6 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = -2 Query: 163 LCFESVGLLSDISVWGCYSTIAWLSDLSSAGF**RRVSCYLRSIFIVGYVL 11 LCF +G + V+G +T+ W LS GF V Y IF+ +L Sbjct: 134 LCFARLGNYFNGEVFGTETTLPWGLKLSHEGFKDLNVEKYFHPIFLYEIIL 184
>ENK11_HUMAN (P61566) HERV-K_22q11.21 provirus ancestral Env polyprotein| (Envelope polyprotein) (HERV-K101 envelope protein) [Contains: Surface protein (SU); Transmembrane protein (TM)] Length = 588 Score = 28.9 bits (63), Expect = 3.4 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Frame = +3 Query: 144 PTDSKHRSKLTTHNEMVNNACGFNYPRVI--TSPLAHGSTAQSWPC-APRCSPLPGGSFH 314 PTD + +K M+N + G+ YP + T+P Q+W P SP+ ++H Sbjct: 25 PTDDRCPAKPEEEGMMINISIGYRYPPICLGTAPGCLMPAVQNWLVEVPIVSPISRFTYH 84 Query: 315 AV 320 V Sbjct: 85 MV 86
>POK20_HUMAN (Q9UQG0) HERV-K_3q27.3 provirus ancestral Pol protein [Includes:| Reverse transcriptase (RT) (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4) (RNase H); Integrase (IN)] Length = 969 Score = 27.7 bits (60), Expect = 7.5 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Frame = +3 Query: 144 PTDSKHRSKLTTHNEMVNNACGFNYPRVI--TSPLAHGSTAQSWPC-APRCSPLPGGSFH 314 PTD + +K M+N + G+ YP + +P T Q+W P SP+ ++H Sbjct: 896 PTDDRCPAKPEEEGMMINISIGYRYPPICLGRAPGCLMPTVQNWLVEVPIVSPICRFTYH 955 Query: 315 AV 320 V Sbjct: 956 MV 957
>FTSK_CHLTR (O84744) DNA translocase ftsK| Length = 799 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -2 Query: 214 LNPQALFTISLCVVSLLLCFESVGLLS 134 L+PQ +F + CV L CF + L S Sbjct: 12 LSPQTVFAVKTCVYLALACFSGLSLWS 38
>FTSK_CHLMU (Q9PLI7) DNA translocase ftsK| Length = 794 Score = 27.7 bits (60), Expect = 7.5 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -2 Query: 214 LNPQALFTISLCVVSLLLCFESVGLLS 134 L+PQ +F I C+ L CF + L S Sbjct: 12 LSPQTVFAIKTCIYLALACFSGLSLWS 38
>CHD3_DROME (O16102) Chromodomain helicase-DNA-binding protein 3 (EC 3.6.1.-)| (ATP-dependent helicase Chd3) Length = 892 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/35 (40%), Positives = 16/35 (45%) Frame = +3 Query: 198 NACGFNYPRVITSPLAHGSTAQSWPCAPRCSPLPG 302 ++C Y R SP W C PRC PLPG Sbjct: 51 DSCPSVYHRTCLSPPLKSIPKGDWIC-PRCIPLPG 84
>CHID_LYCES (Q05537) Basic endochitinase (EC 3.2.1.14) (Fragment)| Length = 246 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +3 Query: 207 GFNYPRVITSPLAHGSTAQSWPCAP 281 G+ Y R SP + +++Q WPCAP Sbjct: 86 GYCYNREQGSPGDYCASSQQWPCAP 110
>ENK9_HUMAN (Q9UKH7) HERV-K_5q13.3 provirus ancestral Env polyprotein precursor| (Envelope polyprotein) (HERV-K104 envelope protein) [Includes: Truncated surface protein (SU)] Length = 277 Score = 27.3 bits (59), Expect = 9.9 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Frame = +3 Query: 144 PTDSKHRSKLTTHNEMVNNACGFNYPRVI--TSPLAHGSTAQSWPC-APRCSPLPGGSFH 314 PTD + +K M+N + G+ YP + +P Q+W P SP+ ++H Sbjct: 136 PTDDRCPAKPEEEGMMINISTGYRYPPICLGRAPGCLMPAVQNWLVEVPTVSPISRFTYH 195 Query: 315 AV 320 V Sbjct: 196 MV 197
>RL36_PONPY (Q5RAZ9) 60S ribosomal protein L36| Length = 104 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 4/29 (13%) Frame = +3 Query: 138 SKPTDSKHRSKLTTH----NEMVNNACGF 212 SKP S+ R +LT H +M+ CGF Sbjct: 21 SKPRHSRRRGRLTKHTKFVRDMIREVCGF 49
>RL36_HUMAN (Q9Y3U8) 60S ribosomal protein L36| Length = 104 Score = 27.3 bits (59), Expect = 9.9 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 4/29 (13%) Frame = +3 Query: 138 SKPTDSKHRSKLTTH----NEMVNNACGF 212 SKP S+ R +LT H +M+ CGF Sbjct: 21 SKPRHSRRRGRLTKHTKFVRDMIREVCGF 49
>ENK15_HUMAN (Q9HDC0) HERV-K_3q21.2 provirus ancestral Env polyprotein (Envelope| polyprotein) (HERV-K(I) envelope protein) [Includes: Truncated surface protein (SU)] Length = 124 Score = 27.3 bits (59), Expect = 9.9 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Frame = +3 Query: 144 PTDSKHRSKLTTHNEMVNNACGFNYPRVI--TSPLAHGSTAQSWPC-APRCSPLPGGSFH 314 PTD + +K M+N + G+ YP + +P Q+W P SP+ ++H Sbjct: 18 PTDDRCPAKPEEERMMINISIGYRYPPICLGRAPGCLMPAVQNWLVEVPTVSPISRFTYH 77 Query: 315 AV 320 V Sbjct: 78 MV 79 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,921,893 Number of Sequences: 219361 Number of extensions: 761364 Number of successful extensions: 2189 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2097 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2188 length of database: 80,573,946 effective HSP length: 82 effective length of database: 62,586,344 effective search space used: 1502072256 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
